Occurrence, physiological and molecular analysis of endophytic diazotrophic bacteria in gramineous energy plants

Plant and Soil

Volumn 194, Issue 1-2, 1997, Pages 45-55

  Kirchhof, G ^a   Reis, V M ^b   Baldani, J I ^b   Eckert, B ^a   Dobereiner J ^b   Hartmann, A ^a  

^a INSTITUTE OF EPIDEMIOLOGY   (Germany)

^b EMBRAPA CERRADOS   (Brazil)

Author keywords

Azospirillum; Diversity; Endophytic diazotrophic bacteria; Herbaspirillum; Phenotypic and molecular taxonomy; Renewable energy resources

Indexed keywords

AZOSPIRILLUM; AZOSPIRILLUM LIPOFERUM; BACTERIA (MICROORGANISMS); HERBASPIRILLUM; HERBASPIRILLUM SEROPEDICAE; MISCANTHUS SACCHARIFLORUS; MISCANTHUS SINENSIS; PENNISETUM GLAUCUM; PENNISETUM PURPUREUM; SPARTINA;

EID: 0030694028     PISSN: 0032079X     EISSN: None     Source Type: Journal    
DOI: 10.1007/978-94-011-7113-7_6     Document Type: Conference Paper

References (42)

1. Aßmus B, Hutzler P, Kirchhof G, Amann R, Lawrence J R and Hartmann A 1995 In situ localization of Azospirillum brasilense in the rhizosphere of wheat with fluorescently labeled, rRNA-targeted oligonucleotide probes and scanning confocal laser microscopy. Appl. Environ. Microbiol. 61, 1013-1019.
2. Aßmus B, Schloter M, Kirchhof G, Hutzler P and Hartmann A 1997 Improved in situ tracking of rhizosphere bacteria using dual staining with fluorescence-labeled antibodies and rRNA-targeted oligonucleotide probes. Microb. Ecol. 33, 32-40.
3. Baldani J I, Pot B, Kirchhof G, Falsen E, Baldani V L D, Olivares F L, Hoste B, Kersters K, Hartmann A, Gillis M and Döbereiner J 1996 Emended description of Herbaspirillum; inclusion of [Pseodomonas] rubrisubalbicans, a mild plant pathogen, as Herbaspirillum rubrisubalbicans comb, nov., and classification of a group of clinical isolates (EF group 1) as Herbaspirillum species 3. Int. J. Syst. Bacteriol. 46, 802-810.
4. Baldani V L D 1996 Caracterização parcial de uma nova bacteria diazotrofica e endofitica do genero Burkholderia. PhD thesis. Universidade Federal Rual no Rio de Janeiro, Brazil.
5. Baldani V L D, Baldani J I, Olivares F L. and Döbereiner J 1992 Identification and ecology of Herbaspirillum seropedicae and the closely related Pseudomonas rubrisubalbicans. Symbiosis 13, 65-73.
6. Boddey R M, de Oliveira O C, Urquiaga S, Reis V M, Olivares F L, Baldani, V L D and Döbereiner J 1995 Biological nitrogen fixation associated with sugar cane and rice: Contributions and prospects of improvement. Plant Soil 174, 195-209.
7. Caballero-Medallo J and Martinez-Romero E 1994 Limited genetic diversity in the endophytic sugarcane bacterium Acetobacter diazotrophicus. Appl. Environ. Microbiol. 60, 1532-1537.
8. Döbereiner J 1992 History and new perspectives of diazotrophs in association with non-leguminous plants. Symbiosis 13, 1-13.
9. Döbereiner J 1995 Isolation and identification of aerobic nitrogen-fixing bacteria from soil and plants. In Methods in Applied Soil Microbiology and Biochemistry Eds. K Alef and P Nannipieri. pp 134-141. Academic Press, London, San Diego, New York, Boston, Sydney, Tokyo, Toronto.
10. Döbereiner J, Baldani V L D and Reis V M 1995 Endophytic occurrence of diazotrophic bacteria in non-leguminous crops. In Azospirillum VI and related microorganisms. Eds. I Fendrik, M del Gallo, J Vanderleyden and M de Zamarocy. pp 3-14. Springer Verlag, Berlin, Germany.
11. Fani R, Bandi C, Bardin M G, Comincini S, Damiani G, Grifoni A and Bazzicalupo M 1993 RAPD fingerprinting is useful for identification of Azospirillum strains. Microb. Releases 1, 217-221.
12. Ferreira M C B, Fernandes M S and Döbereiner J 1987 Role of Azospirillum brasilense nitrate reductase in nitrate assimilation by wheat plants. Biol. Fert. Soils 4, 47-53.
13. Fuentez-Ramirez L E, Jimenez-Salgado T, Abarca-Ocampo I R and Caballero-Medallo J 1993 Acetobacter diazotrophicus, an indolacetic acid producing bacterium isolated from sugarcane cultivars of Mexico. Plant Soil 154, 145-150.
14. Gillis M, Kersters K, Hoste B, Janssen D, Kroppenstedt R M, Stephan M P, Teixera K R S, Döbereiner J and DeLey J 1989Acetobacter diazotrophicus sp. nov., a nitrogen-fixing acetic acid bacterium associated with sugarcane. Int. J. Syst. Bacteriol. 39, 361-364.
15. Gündisch C, Kirchhof G, Baur M, Bode W and Hartmann A 1993 Identification of Azospirillum species by RFLP and pulsed-field gel electrophoresis. Microb. Releases 2, 41-45.
16. Hartmann A, Baldani J I, Kirchhof G, Aßmus B, Hutzler P, Springer N, Ludwig W, Baldani V L D and Döbereiner J 1995 Taxonomic and ecologic studies of diazotrophic rhizosphere bacteria using phylogenetic probes. In Azospirillum VI and related microorganisms. Eds. I Fendrik, M del Gallo, J Vanderleyden and M de Zamarocy. pp 415-427. Springer-Verlag, Berlin.
17. Hurek T, Reinhold-Hurek B, van Montagu M and Kellenberger E 1994 Root colonization and systemic spreading of Azoarcus sp. Strain BH72 in grasses. J. Bacteriol. 176, 1913-1923.
18. Jain D and Patriquin D 1984 Root hair deformation, bacterial attachment, and plant growth in weat-Azospirillum interaction. Appl. Environ. Microbiol. 48, 1208-1213.
19. James E K, Reis V M, Olivares F L, Baldani J I and Döbereiner J 1994 Infection of sugar cane by the nitrogen-fixing bacterium Acetobacter diazotrophicus. J. Exp. Bot. 45, 757-766.
20. Katupipiya S, Millet M, Vesk M, Viccars L, Zeman A, Lidong Z, Elmerich C and Kennedy I R 1995 A mutant of Azospirillum brasilense Sp7 impaired in flocculation with a modified colonization pattern and superior nitrogen fixation in association with wheat. Appl. Environ. Microbiol. 61, 1987-1995.
21. Kirchhof G and Hartmann A 1992 Development of gene-probes for Azospirillum based on 23S-rRNA sequences. Symbiosis 13, 27-35.
22. Kirchhof G, Schloter M, Aßmus B and Hartmann A 1997 Molecular microbial ecology approaches applied to diazotrophs associated with non-legumes. Soil Biol. Biochem. (In press).
23. Kloepper J W and Beauchamp C J 1992 A review of issues related to measuring colonization of plant roots by bacteria. Can. J. Microbiol. 38, 1219-1232.
24. Ludwig W, Dorn S, Springer N, Kirchhof G and Schleifer K H 1994 PCR-based preparation of 23S rRNA-targeted group-specific polynucleotide probes. Appl. Environ. Microbiol. 60, 3236-3244.
25. Manz W, Amann R, Ludwig W, Wagner M and Schleifer K H 1992 Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15, 593-600.
26. Mavingui P, Laguerre G, Berge O and Heulin T 1992 Genetic and phenotypic diversity of Bacillus polymyxa in soil and wheat rhizosphere. Appl. Environ. Microbiol. 58, 1894-1903.
27. McArthur J V, Kovacic D A and Smith M H 1988 Genetic diversity in natural populations of a soil bacterium across a landscape gradient. Proc. Nat. Acad. Sci. 85, 9621-9624.
28. McInroy J A and Kloepper J W 1994 Novel bacterial taxa inhabiting internal tissues of sweet corn and cotton. In Improving plant productivity with rhizosphere bacteria. Eds. M H Ryder, P M Stephens and G D Bowe. p 190. CSIRO Division of Soils, Adelaide, Australia.
29. Olivares F L, Baldani V L D, Reis V M, Baldani J I and Döbereiner J 1993 Ecology of the endophytic diazotrophs Herbaspirillum spp.. Fitopat. Bras. 18, 313.
30. Olivares F L, Baldani V L D, Reis V M, Baldani J I and Döbereiner J 1996 Occurrence of the endophytic diazotrophs Herbaspirillum spp. in roots, stems and leaves predominantly of gramineae. Biol. Fertil. Soils 21, 197-200.
31. Patriquin D G and Döbereiner J 1978 Light microscopy observations of tetrazolium reducing bacteria in the endorhizosphere of maize and other grasses in Brazil. Can. J. Microbiol. 24, 734-742.
32. Pereira J A R 1995 Bacterias diazotroficas e fungos micorrizicos arbusculares em diferentes genotipos de milho (Zea mays L.). PhD thesis. Universidade Federal de Lavras, Brazil.
33. Pinero D, Martinez E and Selander K 1988 Genetic diversity and relationships among isolates of Rhizobium leguminusarum biovar phaseoli. Appl. Environ. Microbiol. 54, 2825-2832.
34. Reinhold-Hurek B, Hurek T, Gillis M, Hoste B, Vancanneyt M, Kersters K and DeLey J 1993a Azoarcus, gen.nov., nitrogen-fixing Proteobacteria associated with roots of Kallar grass (Leptochloa fusca (L.) Kunth), and description of two species, Azoarcus indigens sp. nov. and Azoarcus communis sp.nov.. Int. J. Syst. Bacteriol. 43, 574-584.
35. Reinhold-Hurek B, Hurek T, Claeyssens M and van Montagu M 1993b Cloning, expression in Escherichia coli, and characterization of cellulolytic enzymes of Azoarcus sp., a root-invading diazotroph. J. Bacteriol. 175, 7056-7065.
36. Schloter M, Aßmus B and Hartmann A 1995 The use of immunological methods to detect and identify bacteria in the environment. Biotech. Adv. 13, 75-90.
37. Schloter M, Kirchhof G, Heinzmann U, Döbereiner J and Hartmann A 1994 Immunological studies of the weat-root colonization by the Azospirillum brasilense strains Sp7 and Sp 245 using strain specific monoclonal antibodies. In Nitrogen Fixation with non-legumes. Eds. N Hegazi, M Payez and M Monib. pp 290-295, The American University in Cairo Press, Cairo, Egypt.
38. Silva M M P, Reis V M, Urquiaga S, Boddey R M, Xavier D F and Döbereiner J 1995 Screening Pennisetum ecotypes (Pennisetum purpureum, Schum.) for Biological Nitrogen Fixation. In Int. Symp. of Sustainable Agriculure for the Tropics-The Role of Nitrogen Fixation (Book of abstracts). Eds. R M Boddey and A S de Resende, pp 236-237. Angra dos Reis, Brazil.
39. Smida J, Leibhard S, Nickel A M, Eckardt-Schupp F and Hieber L 1996 Application of repetitive sequence-based PCR (Inter-LINE PCR) for the analysis of genomic rearrangements and for the genome characterization on different taxonomic levels. Gen. Anal. (Biomolecular Engineering) 13, 95-98.
40. Strunk O and Ludwig W 1997 ARB: A software environment for sequence data. Nucleic Acid Res. (In press)
41. Urquiaga S, Cruz K H S and Boddey R M 1992 Contribution of nitrogen fixation to sugarcane: Nitrogen-15 and nitrogen balance estimates. Soil Sci. Soc. Am. Proc. 56, 105-114.
42. Versalovich J, Schneider M, deBruijn F and Lupski J R 1994 Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Meth. Mol. Cellul. Biol. 5, 25-40.