Atp requirement for acidic resistance in Escherichia coli

Journal of Bacteriology

Volumn 193, Issue 12, 2011, Pages 3072-3077

  Sun, Yirong ^a   Fukamachi, Toshihiko ^a   Saito, Hiromi ^a   Kobayashi, Hiroshi ^a  

^a CHIBA UNIVERSITY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

ACID; ADENOSINE DIPHOSPHATE; ADENOSINE PHOSPHATE; ADENOSINE TRIPHOSPHATE; AMINO ACID; ARGININE; GLUTAMIC ACID; INOSINE PHOSPHATE; LYSINE; PURINE NUCLEOTIDE;

ARTICLE; BACTERIAL CELL; BACTERIAL GENE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIAL SURVIVAL; BIOSYNTHESIS; DECARBOXYLATION; DNA DAMAGE; DNA REPAIR; ESCHERICHIA COLI; GENE DELETION; GENE MUTATION; NONHUMAN; PH; PRIORITY JOURNAL; PURA BACTERIAL GENE; PURB BACTERIAL GENE; RECB BACTERIAL GENE;

ACIDS; ADENOSINE TRIPHOSPHATE; ARGININE; DNA DAMAGE; DNA, BACTERIAL; ESCHERICHIA COLI; ESCHERICHIA COLI PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; GENOME, BACTERIAL; GLUTAMIC ACID; HOMEOSTASIS; HYDROGEN-ION CONCENTRATION; LYSINE;

ESCHERICHIA COLI;

EID: 79958076326     PISSN: 00219193     EISSN: 10985530     Source Type: Journal    
DOI: 10.1128/JB.00091-11     Document Type: Article

References (42)

1. Bi, H., L. Sun, T. Fukamachi, H. Saito, and H. Kobayashi. 2009. HU participates in expression of a specific set of genes required for growth and survival at acidic pH in Escherichia coli. Curr. Microbiol. 58:443-448.
2. Castanie-Cornet, M. P., and J. W. Foster. 2001. Escherichia coli acid resistance: cAMP receptor protein and a 20 bp cis-acting sequence control pH and stationary phase expression of the gadA and gadBC glutamate decarboxylase genes. Microbiology 147:709-715.
3. Castanie-Cornet, M. P., T. A. Penfound, D. Smith, J. F. Elliott, and J. W. Foster. 1999. Control of acid resistance in Escherichia coli. J. Bacteriol. 181:3525-3535.
4. Datsenko, K. A., and B. L. Wanner. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl. Acad. Sci. U. S. A. 97:6640-6645.
5. Foster, J. W. 2004. Escherichia coli acid resistance: tales of an amateur acidophile. Nat. Rev. Microbiol. 2:898-907.
6. Gong, S., H. Richard, and J. W. Foster. 2003. YjdE (AdiC) is the arginine: agmatine antiporter essential for arginine-dependent acid resistance in Escherichia coli. J. Bacteriol. 185:4402-4409.
7. Hansen, A. M., et al. 2005. SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli. Mol. Microbiol. 56: 719-734.
8. Hersh, B. M., F. T. Farooq, D. N. Barstad, D. L. Blankenhorn, and J. L. Slonczewski. 1996. A glutamate-dependent acid resistance gene in Escherichia coli. J. Bacteriol. 178:3978-3981.
9. Hirakawa, H., M. Hayashi-Nishino, A. Yamaguchi, and K. Nishino. 2010. Indole enhances acid resistance in Escherichia coli. Microb. Pathog. 49: 90-94.
10. Iyer, R., C. Williams, and C. Miller. 2003. Arginine-agmatine antiporter in extreme acid resistance in Escherichia coli. J. Bacteriol. 185:6556-6561.
11. Jensen, K. F. 1993. The Escherichia coli K-12 " wild types" W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels. J. Bacteriol. 175:3401-3407.
12. Jeong, K. C., K. F. Hung, D. J. Baumler, J. J. Byrd, and C. W. Kaspar. 2008. Acid stress damage of DNA is prevented by Dps binding in Escherichia coli O157:H7. BMC Microbiol. 8:181.
13. Kashket, E. R. 1985. The proton motive force in bacteria: a critical assessment of methods. Annu. Rev. Microbiol. 39:219-242.
14. Kobayashi, H. 1985. A proton-translocating ATPase regulates pH of the bacterial cytoplasm. J. Biol. Chem. 260:72-76.
15. Kobayashi, H., and Y. Anraku. 1972. Membrane-bound adenosine triphosphatase of Escherichia coli. I. Partial purification and properties. J. Biochem. 71:387-399.
16. Lasko, D. R., and D. I. Wang. 1993. In situ fermentation monitoring with recombinant firefly luciferase. Biotechnol. Bioeng. 42:30-36.
17. Lease, R. A., D. Smith, K. McDonough, and M. Belfort. 2004. The small noncoding DsrA RNA is an acid resistance regulator in Escherichia coli. J. Bacteriol. 186:6179-6185.
18. Lennox, E. S. 1955. Transduction of linked genetic characters of the host by bacteriophage P1. Viology 1:190-206.
19. Lochowska, A., et al. 2004. Identification of activating region (AR) of Escherichia coli LysR-type transcription factor CysB and CysB contact site on RNA polymerase alpha subunit at the cysP promoter. Mol. Microbiol. 53: 791-806.
20. Lowry, O. H., N. J. Rosebrough, A. L. Farr, and R. J. Randall. 1951. Protein measurement with the Folin phenol reagent. J. Biol. Chem. 193:265-275.
21. Maharjan, R. P., and T. Ferenci. 2003. Global metabolite analysis: the influence of extraction methodology on metabolome profiles of Escherichia coli. Anal. Biochem. 313:145-154.
22. Meng, S. Y., and G. N. Bennett. 1992. Nucleotide sequence of the Escherichia coli cad operon: a system for neutralization of low extracellular pH. J. Bacteriol. 174:2659-2669.
23. Nakamura, H., I. Yamato, Y. Anraku, L. Lemieux, and R. B. Gennis. 1990. Expression of cyoA and cyoB demonstrates that the CO-binding heme component of the Escherichia coli cytochrome o complex is in subunit I. J. Biol. Chem. 265:11193-11197.
24. Ohyama, T., K. Igarashi, and H. Kobayashi. 1994. Physiological role of the chaA gene in sodium and calcium circulations at a high pH in Escherichia coli. J. Bacteriol. 176:4311-4315.
25. Opdyke, J. A., J. G. Kang, and G. Storz. 2004. GadY, a small-RNA regulator of acid response genes in Escherichia coli. J. Bacteriol. 186:6698-6705.
26. Pimkin, M., J. Pimkina, and G. D. Markham. 2009. A regulatory role of the Bateman domain of IMP dehydrogenase in adenylate nucleotide biosynthesis. J. Biol. Chem. 284:7960-7969.
27. Price, S. B., et al. 2000. Role of rpoS in acid resistance and fecal shedding of Escherichia coli O157:H7. Appl. Environ. Microbiol. 66:632-637.
28. Ramírez Santos, J., F. G. Contreras, and E. M. C. Gómez. 2005. Stationary phase in Escherichia coli. Rev. Latinoam. Microbiol. 47:92-101.
29. Richard, H., and J. W. Foster. 2004. Escherichia coli glutamate- and argininedependent acid resistance systems increase internal pH and reverse transmembrane potential. J. Bacteriol. 186:6032-6041.
30. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
31. Sayed, A. K., and J. W. Foster. 2009. A 750 bp sensory integration region directs global control of the Escherichia coli GadE acid resistance regulator. Mol. Microbiol. 71:1435-1450.
32. Seputiene, V., A. Daugelavicius, K. Suziedelis, and E. Suziedeliene. 2006. Acid response of exponentially growing Escherichia coli K-12. Microbiol. Res. 161:65-74.
33. Seputiene, V., et al. 2003. Molecular characterization of the acid-inducible asr gene of Escherichia coli and its role in acid stress response. J. Bacteriol. 185:2475-2484.
34. Shi, X., and G. N. Bennett. 1994. Effects of rpoA and cysB mutations on acid induction of biodegradative arginine decarboxylase in Escherichia coli. J. Bacteriol. 176:7017-7023.
35. Shi, X., and G. N. Bennett. 1994. Plasmids bearing hfq and the hns-like gene stpA complement hns mutants in modulating arginine decarboxylase gene expression in Escherichia coli. J. Bacteriol. 176:6769-6775.
36. Smith, J. L. 2003. The role of gastric acid in preventing foodborne disease and how bacteria overcome acid conditions. J. Food Prot. 66:1292-1303.
37. Stewart, N., et al. 2005. Loss of topoisomerase I function affects the RpoSdependent and GAD systems of acid resistance in Escherichia coli. Microbiology 151:2783-2791.
38. Sun, L., T. Fukamachi, H. Saito, and H. Kobayashi. 2005. Carbon dioxide increases acid resistance in Escherichia coli. Lett. Appl. Microbiol. 40:397-400.
39. Tubbs, J. L., et al. 2009. Flipping of alkylated DNA damage bridges base and nucleotide excision repair. Nature 459:808-813.
40. Vazquez-Juarez, R. C., et al. 2008. CadA negatively regulates Escherichia coli O157:H7 adherence and intestinal colonization. Infect. Immun. 76:5072- 5081.
41. Wagner, K., G. F. Moolenaar, and N. Goosen. 2010. Role of the two ATPase domains of Escherichia coli UvrA in binding non-bulky DNA lesions and interaction with UvrB. DNA Repair (Amsterdam) 9:1176-1186.
42. Wu, C. G., C. Bradford, and T. M. Lohman. 2010. Escherichia coli RecBC helicase has two translocase activities controlled by a single ATPase motor. Nat. Struct. Mol. Biol. 10:1210-1217.