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Volumn 8, Issue 4, 2011, Pages 876-889

Asymmetric comparison and querying of biological networks

Author keywords

asymmetric alignment; Biological networks; evolutive conservations; master slave analysis; network querying

Indexed keywords

ASYMMETRIC ALIGNMENT; BIOLOGICAL NETWORKS; EVOLUTIVE CONSERVATIONS; MASTER-SLAVE; NETWORK QUERYING;

EID: 79957964480     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2011.29     Document Type: Article
Times cited : (18)

References (29)
  • 3
    • 78149247089 scopus 로고    scopus 로고
    • Querying graphs in protein- protein interactions networks using feedback vertex set
    • Oct.-Dec.
    • G. Blin, F. Sikora, and S. Vialette, "Querying Graphs in Protein- Protein Interactions Networks Using Feedback Vertex Set," IEEE/ ACM Trans. Computational Biology and Bioinformatics, vol. 7, no. 4, pp. 628-635, Oct.-Dec. 2010.
    • (2010) IEEE/ACM Trans. Computational Biology and Bioinformatics , vol.7 , Issue.4 , pp. 628-635
    • Blin, G.1    Sikora, F.2    Vialette, S.3
  • 7
    • 0015600423 scopus 로고
    • The viterbi algorithm
    • Mar.
    • G.D. Forney, "The Viterbi Algorithm," Proc. IEEE, vol. 61, no. 3, pp. 268-278, Mar. 1973.
    • (1973) Proc. IEEE , vol.61 , Issue.3 , pp. 268-278
    • Forney, G.D.1
  • 12
    • 33947712535 scopus 로고    scopus 로고
    • WI-PHI: A weighted yeast interactome enriched for direct physical interactions
    • DOI 10.1002/pmic.200600448
    • L. Kiemer et al., "WI-PHI: AWeighted Yeast Interactome Enriched for Direct Physical Interactions," Proteomics, vol. 7, pp. 932-943, 2007. (Pubitemid 46506740)
    • (2007) Proteomics , vol.7 , Issue.6 , pp. 932-943
    • Kiemer, L.1    Costa, S.2    Ueffing, M.3    Cesareni, G.4
  • 13
    • 60849107715 scopus 로고    scopus 로고
    • A new graph-based method for pairwise global network alignment
    • G.W. Klau, "A New Graph-Based Method for Pairwise Global Network Alignment," BMC Bioinformatics, vol. 10, no. Suppl. 1, p. S59, 2009.
    • (2009) BMC Bioinformatics , vol.10 , Issue.SUPPL. 1
    • Klau, G.W.1
  • 14
    • 33645985807 scopus 로고    scopus 로고
    • Pairwise alignment of protein interaction networks
    • M. Koyuturk et al., "Pairwise Alignment of Protein Interaction Networks," J. Computational Biology, vol. 13, no. 2, pp. 182-199, 2006.
    • (2006) J. Computational Biology , vol.13 , Issue.2 , pp. 182-199
    • Koyuturk, M.1
  • 15
    • 33645453254 scopus 로고    scopus 로고
    • Global landscape of protein complexes in the yeast saccharomyces cerevisiae
    • N.J. Krogan et al., "Global Landscape of Protein Complexes in the Yeast Saccharomyces Cerevisiae," Nature, vol. 440, no. 7084, pp. 637-643, 2006.
    • (2006) Nature , vol.440 , Issue.7084 , pp. 637-643
    • Krogan, N.J.1
  • 16
    • 66349108229 scopus 로고    scopus 로고
    • IsoRankN: Spectral methods for global alignment of multiple protein networks
    • C.-S. Liao et al., "IsoRankN: Spectral Methods for Global Alignment of Multiple Protein Networks," Bioinformatics, vol. 25, pp. i253-i258, 2009.
    • (2009) Bioinformatics , vol.25
    • Liao, C.-S.1
  • 17
    • 34548755675 scopus 로고    scopus 로고
    • Comparing protein interaction networks via a graph match-and-split algorithm
    • DOI 10.1089/cmb.2007.0025
    • M. Narayanan and R.M. Karp, "Comparing Protein Interaction Networks via a Graph Match-and-Split Algorithm," J. Computational Biology, vol. 14, no. 7, pp. 892-907, 2007. (Pubitemid 47427598)
    • (2007) Journal of Computational Biology , vol.14 , Issue.7 , pp. 892-907
    • Narayanan, M.1    Karp, R.M.2
  • 18
    • 77952310982 scopus 로고    scopus 로고
    • SING: Subgraph search in non-homogeneous graphs
    • R.D. Natale et al., "SING: Subgraph Search in Non-Homogeneous Graphs," BMC Bioinformatics, vol. 11, p. 96, 2010.
    • (2010) BMC Bioinformatics , vol.11 , pp. 96
    • Natale, R.D.1
  • 20
    • 59649104116 scopus 로고    scopus 로고
    • Querying pathways in protein interaction networks based on hidden markov models
    • X. Qian, S.-H. Sze, and B.-J. Yoon, "Querying Pathways in Protein Interaction Networks Based on Hidden Markov Models," J. Computational Biology, vol. 16, no. 2, pp. 145-157, 2009.
    • (2009) J. Computational Biology , vol.16 , Issue.2 , pp. 145-157
    • Qian, X.1    Sze, S.-H.2    Yoon, B.-J.3
  • 22
    • 33646347364 scopus 로고    scopus 로고
    • QPath: A method for querying pathways in a protein-protein interaction network
    • article no. 199
    • T. Shlomi et al., "QPath: A Method for Querying Pathways in a Protein-Protein Interaction Network," BMC Bioinformatics, vol. 7, article no. 199, 2006.
    • (2006) BMC Bioinformatics , vol.7
    • Shlomi, T.1
  • 25
    • 33644873184 scopus 로고    scopus 로고
    • BioGRID: A general repository for interaction datasets
    • C. Stark et al., "BioGRID: A General Repository for Interaction Datasets," Nucleic Acids Research, vol. 34, pp. D535-D539, 2006.
    • (2006) Nucleic Acids Research , vol.34
    • Stark, C.1
  • 26
    • 33846662155 scopus 로고    scopus 로고
    • SAGA: A subgraph matching tool for biological graphs
    • DOI 10.1093/bioinformatics/btl571
    • Y. Tian et al., "SAGA: A Subgraph Matching Tool for Biological Graphs," Bioinformatics, vol. 23, no. 2, pp. 232-239, 2007. (Pubitemid 46189614)
    • (2007) Bioinformatics , vol.23 , Issue.2 , pp. 232-239
    • Tian, Y.1    McEachin, R.C.2    Santos, C.3    States, D.J.4    Patel, J.M.5
  • 27
    • 84935113569 scopus 로고
    • Error bounds for convolutional codes and an asymptotically optimum decoding algorithm
    • Apr.
    • A.J. Viterbi, "Error Bounds for Convolutional Codes and an Asymptotically Optimum Decoding Algorithm," IEEE Trans. Information Theory, vol. 13, no. 2, pp. 260-269, Apr. 1967.
    • (1967) IEEE Trans. Information Theory , vol.13 , Issue.2 , pp. 260-269
    • Viterbi, A.J.1
  • 28
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of a large-scale data sets of protein-protein interactions
    • D. von Mering et al., "Comparative Assessment of a Large-Scale Data Sets of Protein-Protein Interactions," Nature, vol. 417, no. 6887, pp. 399-403, 2002.
    • (2002) Nature , vol.417 , Issue.6887 , pp. 399-403
    • Von Mering, D.1
  • 29
    • 34047236483 scopus 로고    scopus 로고
    • Path matching and graph matching in biological networks
    • DOI 10.1089/cmb.2006.0076
    • Q. Yang and S.-H. Sze, "Path Matching and Graph Matching in Biological Networks," J. Computational Biology, vol. 14, no. 1, pp. 56-67, 2007. (Pubitemid 46535306)
    • (2007) Journal of Computational Biology , vol.14 , Issue.1 , pp. 56-67
    • Yang, Q.1    Sze, S.-H.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.