Saccharopolyspora pathumthaniensis sp. nov., a novel actinomycetes isolated from termite guts (Speculitermes sp.)

Journal of General and Applied Microbiology

Volumn 57, Issue 2, 2011, Pages 93-100

  Sinma, Kanokkorn ^a   Ishida, Yuumi ^c   Tamura, Tomohiko ^c   Kitpreechavanich, Vichien ^b   Tokuyama, Shinji ^a  

^a SHIZUOKA UNIVERSITY   (Japan)

^b KASETSART UNIVERSITY   (Thailand)

^c NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

Author keywords

Actinomycetes; Pseudonocardiaceae; Saccharopolyspora; Termite guts

Indexed keywords

DNA 16S;

ARTICLE; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; DNA SEQUENCE; GENE EXPRESSION; GENOTYPE; ISOPTERA; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; SACCHAROPOLYSPORA; SACCHAROPOLYSPORA ENDOPHYTICA; SACCHAROPOLYSPORA PATHUMTHANIENSIS; THAILAND;

ANIMALS; BASE COMPOSITION; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; GASTROINTESTINAL TRACT; ISOPTERA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SACCHAROPOLYSPORA; SEQUENCE ANALYSIS, DNA; THAILAND;

ACTINOBACTERIA (CLASS); ISOPTERA; PSEUDONOCARDIACEAE; SACCHAROPOLYSPORA; SPECULITERMES;

EID: 79957825334     PISSN: 00221260     EISSN: 13498037     Source Type: Journal    
DOI: 10.2323/jgam.57.93     Document Type: Article

References (44)

1. Benson, D. A., Boguski, M. S., Lipman, D. J., and Ostell, J. (1997) GenBank. Nucleic Acids Res., 25, 1-6
2. Duangmal, K., Mingma, R., Thamchaipenet, A., Matsumoto, A., and Takahashi, Y. (2010) Saccharopolyspora phatthalungensis sp. nov., isolated from rhizosphere soil of Hevea brasiliensis. Int. J. Syst. Evol. Microbiol., 60, 1904-1908
3. Embley, T. M. (1992) The family Pseudonocardiaceae. In the Prokaryotes, Vol. 1, ed. by Balows, A., Trüper, H. G., Dworkin, M., Harder, W., and Schleifer, K. H., Springer, Berlin. pp. 996-1027
4. Embley, T. M., Roston, J., O'Donnell, A. G., and Goodfellow, M. (1987) Fatty acid composition in the classifi cation of Saccharopolyspora hirsuta. FEMS Microbiol. Lett., 41, 131-135.
5. Embley, T. M., Smida, J., and Stackebrandt, E. (1988) Reverse transcriptase sequencing of 16S ribosomal RNA from Faenia rectivirgula, Pseudonocardia thermophila and Saccharopolyspora hirsuta, three wall type IV actinomycetes which lack mycolic acids. J. Gen. Microbiol., 134, 961-966
6. Ezaki, T., Hashimoto, Y., and Yabuuchi, E. (1989) Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane fi lter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int. J. Syst. Bacteriol., 39, 224-229
7. Felsentein, J. (1985) Confi dence limits on phylogenies: An approach using the bootstrap. Evolution, 39, 783-791
8. Goodfellow, M., Lacey, J., Athalye, M., Embley, T. M., and Bowen, T. (1989) Saccharopolyspora gregorii and Saccharopolyspora hordei: Two new actinomycetes species from fodder. J. Gen. Microbiol., 135, 2125-2139
9. Gordon, R. E., Barnett, D. A., Handerhan, J. E., and Pang, C. H. N. (1974) Nocardia coeliaca, Nocardia autotrophica, and the nocardia strain. Int. J. Syst. Bacteriol., 24, 54-63.
10. Hall, T. A. (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis. http://www.mbio.ncsu.edu/BioEdit/bioedit.html
11. Hamada, M. (2000) Morphological, physiological and biological character of Actinomycetes. In Identification Manual of Actinomycetes. ed. by The Society for Actinomycetes Japan, pp. 37-47 (In Japanese).
12. Hasegawa, T., Takizawa, M., and Tanida, S. (1983) A rapid analysis for chemical grouping of aerobic actinomycetes. J. Gen. Appl. Microbiol., 29, 319-322.
13. Hayakawa, M. and Nonomura, H. (1987) Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes. J. Ferment. Technol., 65: 501-509.
14. Hopwood, D. A., Bibb, M. J., Chater, K. F., Kieser, T., Bruton, C. J., Kieser, H. M., Lydiate, D. J., Smith, C. P., Ward, J. M., and Schrempf, H. (1985) Preparation of chromosomal, plasmid and phage DNA. In Genetic Manipulation of Streptomyces. A Laboratory Manual, John Innes Foundation, Norwich, pp. 70-74.
15. Hsu, S. C. and Lockwood, J. L. (1975) Powdered chitin as a selective medium for enumeration of actinomycetes in water and soil. Appl. Microbiol., 29, 422-426.
16. Korn-Wendisch, F., Kempf, A., Grund, E., Kroppenstedt, R. M., and Kutzner, H. J. (1989) Transfer of Faenia rectivirgula Kurup and Agre 1983 to the genus Saccharopolyspora Lacey and Goodfellow 1975, elevation of Saccharopolyspora hirsute subsp. taberi Labeda 1987 to species level, and emended description of the genus Saccharopolyspora. Int. J. Syst. Bacteriol., 39, 430-441.
17. Kumar, S., Dudley, J., Nei, M., and Tamura, K. (2008) MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences. Brief. Bioinform., 9, 299-306.
18. Labeda, D. P. (1987) Transfer of the type strain of Streptomyces erythraeus (Waksman, 1923) Waksman and Henrici 1948 to the genus Saccharopolyspora Lacey and Goodfellow 1975 as Saccharopolyspora erythraea sp. nov., and designation of the neotype strain for Streptomyces erythraeus. Int. J. Syst. Bacteriol., 37, 19-22.
19. Lacey, J. and Goodfellow, M. (1975) A novel actinomycetes from sugar cane bagasse: Saccharopolyspora hirsuta gen. et sp. nov. J. Gen. Microbiol., 88, 75-85.
20. Lechevalier, M. P., De Bievre, C., and Lechevalier, H. A. (1977) Chemotaxonomy of aerobic actinomycetes: Phospholipids composition. Biochem. Syst. Ecol., 5, 249-260.
21. Lechevalier, M. P. and Lechevalier, H. A. (1970) Chemical composition as a criterion in the classifi cation of aerobic actinomycetes. Int. J. Syst. Bacteriol., 20, 435-443.
22. Lechevalier, M. P. and Lechevalier, H. A. (1980) The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy (Society for Industrial Microbiology Special Publication Number 6), ed. by Dietz, A. and Thayer, D. W., SIM, Arlington, pp. 277-284.
23. Li, J., Zhao, G. Z., Qin, S., Huang, H. Y., Zhu, W. Y., Xu, L. H., and Li, W. J. (2009) Saccharopolyspora tripterygii sp. nov., an endophytic actinomycete isolated from the stem of Tripterygium hypoglaucum. Int. J. Syst. Evol. Microbiol., 59, 3040-3044.
24. Lu, Z., Liu, Z., Wang, L., Zhang, Y., Qi, W., and Goodfellow, M. (2001) Saccharopolyspora fl ava sp. nov. and Saccharopolyspora thermophila sp. nov., novel actinomycetes from soil. Int. J. Syst. Evol. Microbiol., 51, 319-325.
25. Mertz, F. P. and Yao, R. C. (1990) Saccharopolyspora spinosa sp. nov. isolated from soil collected in a sugar mill rum still. Int. J. Syst. Bacteriol., 40, 34-39.
26. Pimentel-Elardo, S. M., Tiro, L. P., Grozdanov, L., and Hentschel, U. (2008) Saccharopolyspora cebuensis sp. nov., a novel actinomycete isolated from a Philippine sponge (Porifera). Int. J. Syst. Evol. Microbiol., 58, 628-632.
27. Qin, S., Li, J., Zhao, G. Z., Chen, H. H., Xu, L. H., and Li, W. J. (2008) Saccharopolyspora endophytica sp. nov., an endophytic actinomycete isolated from the root of Maytenus austroyunnanensis. Syst. Appl. Microbiol., 31, 352-357.
28. Saitou, N. and Nei, M. (1987) The neighbor-joining method: A new method for constructing phylogenetic trees. Mol. Biol. Evol., 4, 406-425.
29. Sasser, M. (1990) Identification of Bacteria by Gas Chromatography of Cellular Fatty Acids (MIDI Technical Note 101), MIDI, Newark, DE.
30. Shirling, E. B. and Gottlieb, D. (1966) Methods for characterization of Streptomyces species. Int. J. Syst. Bacteriol., 16, 313-340.
31. Sierra, G. (1957) A simple method for the detection of lipolytic activity of microorganisms and some observation on the influence of the contact between cells and fatty substrate. Antonie van Leeuwenhoek, 23, 15-22.
32. Stackebrandt, E. and Goebel, B. M. (1994) Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species defi nition in bacteriology. Int. J. Syst. Bacteriol., 44, 846-849.
33. Tamaoka, J. and Komagata, K. (1984) Determination of DNA base composition by reversed-phase high-performance liquid chromatography. FEMS Microbiol. Lett., 25, 125-128.
34. Tamura, T., Nakagaito, Y., Nishii, T., Hasegawa, T., Stackebrandt, E., and Yokota, A. (1994) A new genus of the order Actinomycetales,Couchioplanes gen nov., with descriptions of Couchioplanes caeruleus (Horan and Brodsky 1986) comb. nov. and Couchioplanes caeruleus subsp. Azureus subsp. nov. Int. J. Syst. Bacteriol., 44, 193-203.
35. Tang, S. K., Wang, Y., Cai, M., Zhi, X. Y., Lou, K., Xu, L. H., Jiang, C. L., and Li, W. J. (2009) Saccharopolyspora halophila sp. nov., a novel halophilic actinomycete isolated from a saline lake in China. Int. J. Syst. Evol. Microbiol., 59, 555-558.
36. Tang, S. K., Wang, Y., Wu, J. Y., Cao, L. L., Lou, K., Xu, L. H., Jiang, C. L., and Li, W. J. (2009) Saccharopolyspora qijiaojingensis sp. nov., a halophilic actinomycete isolated from a salt lake. Int. J. Syst. Evol. Microbiol., 59, 2166-2170.
37. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F., and Higgins, D. G. (1997) The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res., 25, 4876-4882.
38. Warwick, S. T., Bowen, T., McVeigh, H., and Embley, T. M. (1994) A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and proposal to combine the genera Amycolata and Pseudonocardia in the emended genus Pseudonocardia. Int. J. Syst. Bacteriol., 44, 293-299.
39. Williams, S. T., Sharpe, M. E., Holt, J. G., Murray, G. E., Brener, D. J., Krieg, N. R., Mouldar, J. W., Pfennig, N. P., Sneath, H. A., and Staley, J. T. (1989) Bergey's Manual of Systematic Bacteriology, Vol. 4, Williams & Wilkins, Baltimore.
40. Yassin, A. F. (2009) Saccharopolyspora rosea sp. nov., isolated from a patient with bronchial carcinoma. Int. J. Syst. Evol. Microbiol., 59, 1148-1152.
41. Yuan, L. J., Zhang, Y. Q., Guan, Y., Wei, Y. Z., Li, Q. P., Yu, L. Y., Li, W. J., and Zhang, Y. Q. (2008) Saccharopolyspora antimicrobica sp. nov., an actinomycete from soil. Int. J. Syst.Evol. Microbiol., 58, 1180-1185.
42. Zhang, J., Wu, D., and Liu, Z. (2009) Saccharopolyspora jiangxiensis sp. nov., isolated from grass-field soil. Int. J. Syst. Evol. Microbiol., 59, 1076-1081.
43. Zhang, J., Wu, D., Zhang, J., Liu, Z., and Song, F. (2008) Saccharopolyspora shandongensis sp. nov., isolated from wheat-field soil. Int. J. Syst. Evol. Microbiol., 58, 1094-1099.
44. Zhou, Z. H., Liu, Z. H., Qian, Y. D., Kim, S. B., and Goodfellow, M. (1998) Saccharopolyspora spinosporotrichia sp. nov., a novel actinomycete from soil. Int. J. Syst. Bacteriol., 48,53-58.