Saccharopolyspora tripterygii sp. nov., an endophytic actinomycete isolated from the stem of Tripterygium hypoglaucum

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 12, 2009, Pages 3040-3044

  Li, Jie ^a,c   Zhao, Guo Zhen ^a,c   Qin, Sheng ^a,c   Huang, Hai Yu ^a,c   Zhu, Wen Yong ^a,c   Xu, Li Hua ^a,c   Li, Wen Jun ^a,b,c  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^b SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

^c YUNNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENE SEQUENCE; MORPHOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT STEM; PRIORITY JOURNAL; SACCHAROPOLYSPORA; SACCHAROPOLYSPORA ENDOPHYTICA; SACCHAROPOLYSPORA FLAVA; SACCHAROPOLYSPORA SPINOSA; SACCHAROPOLYSPORA TRIPTERYGII; SEQUENCE ANALYSIS; SPECIES COMPARISON; TRIPTERYGIUM; TRIPTERYGIUM HYPOGLAUCUM;

DNA, BACTERIAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT STEMS; RNA, RIBOSOMAL, 16S; SACCHAROPOLYSPORA; TRIPTERYGIUM;

SACCHAROPOLYSPORA; SACCHAROPOLYSPORA FLAVA; SACCHAROPOLYSPORA SPINOSA; TRIPTERYGIUM HYPOGLAUCUM;

EID: 72149122100     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.011734-0     Document Type: Article

References (28)

1. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
2. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. J Gen Microbiol 100, 221-230.
3. Embley, T. M., Wait, R., Dobson, G. & Goodfellow, M. (1987). Fatty acid composition in the classification of Saccharopolyspora hirsuta. FEMS Microbiol Lett 41, 131-135.
4. Ezaki, T., Hashimoto, Y. & Yabuuchi, E. (1989). Fluorometric deoxyribonucleic acid-deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39, 224-229.
5. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
6. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
7. Goodfellow, M., Lacey, J., Athalye, M., Embley, T. M. & Bowen, T. (1989). Saccharopolyspora gregorii and Saccharopolyspora hordei: two new actinomycete species from fodder. J Gen Microbiol 135, 2125-2139.
8. Gordon, R. E., Barnett, D. A., Handerhan, J. E. & Pang, C. H.-N. (1974). Nocardia coeliaca, Nocardia autotrophica, and the nocardin strain. Int J Syst Bacteriol 24, 54-63.
9. He, L., Li, W., Huang, Y., Wang, L. M., Liu, Z. H., Lanoot, B. J., Vancanneyt, M. & Swings, J. (2005). Streptomyces jietaisiensis sp. nov., isolated from soil in northern China. Int J Syst Evol Microbiol 55, 1939-1944.
10. Kelly, K. L. (1964). Inter-Society Color Council - National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
11. Korn-Wendisch, F., Kempf, A., Grund, E., Kroppenstedt, R. M. & Kutzner, H. J. (1989). Transfer of Faenia rectivirgula Kurup and Agre 1983 to the genus Saccharopolyspora Lacey and Goodfellow 1975, elevation of Saccharopolyspora hirsuta subsp. taberi Labeda 1987 to species level, and emended description of the genus Saccharopolyspora. Int J Syst Bacteriol 39, 430-441.
12. Lacey, J. & Goodfellow, M. (1975). A novel actinomycete from sugar cane bagasse: Saccharopolyspora hirsuta gen. et sp. nov. J Gen Microbiol 88, 75-85.
13. Li, W. J., Xu, P., Schumann, P., Zhang, Y. Q., Pukall, R., Xu, L. H., Stackebrandt, E. & Jiang, C. L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China) and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
14. Li, J., Zhao, G. Z., Qin, S., Zhu, W. Y., Xu, L. H. & Li, W. J. (2009). Streptomyces sedi sp. nov., isolated from a surface-sterilized tissue of Sedum sp. Int J Syst Evol Microbiol 59, 1492-1496.
15. Lu, Z., Liu, Z., Wang, L., Zhang, Y., Qi, W. & Goodfellow, M. (2001). Saccharopolyspora flava sp. nov. and Saccharopolyspora thermophila sp. nov., novel actinomycetes from soil. Int J Syst Evol Microbiol 51, 319-325.
16. Mertz, F. P. & Yao, R. C. (1990). Saccharopolyspora spinosa sp. nov. isolated from soil collected in a sugar mill rum still. Int J Syst Bacteriol 40, 34-39.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
19. Qin, S., Li, J., Zhao, G. Z., Chen, H. H., Xu, L. H. & Li, W. J. (2008). Saccharopolyspora endophytica sp. nov., an endophytic actinomycete isolated from the root of Maytenus austroyunnanensis. Syst Appl Microbiol 31, 352-357.
20. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic tree. Mol Biol Evol 4, 406-425.
21. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids. USFCC Newsl 20, 16.
22. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
23. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
24. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin layer chromatography. Appl Microbiol 28, 226-231.
25. Tamaoka, J., Katayama-Fujimura, Y. & Kuraishi, H. (1983). Analysis of bacterial menaquinone mixtures by high performance liquid chromatography. J Appl Bacteriol 54, 31-36.
26. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
27. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
28. Waksman, S. A. (1961). The Actinomycetes, vol. 2. Baltimore: Williams & Wilkins.