Differences Between Bacterial Communities Associated with the Surface or Tissue of Mediterranean Sponge Species

Microbial Ecology

Volumn 61, Issue 4, 2011, Pages 769-782

  Gerçe, Berna ^a   Schwartz, Thomas ^a   Syldatk, Christoph ^a   Hausmann, Rudolf ^a  

^a KARLSRUHE INSTITUTE OF TECHNOLOGY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; RIBOSOME DNA; SEA WATER;

ANIMAL; ARTICLE; BACTERIUM; BIODIVERSITY; CLASSIFICATION; COMPARATIVE STUDY; GENETICS; ISOLATION AND PURIFICATION; MEDITERRANEAN SEA; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; SPONGE (PORIFERA);

ANIMALS; BACTERIA; BIODIVERSITY; DNA, BACTERIAL; DNA, RIBOSOMAL; MEDITERRANEAN SEA; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORIFERA; SEAWATER;

AGELAS; AGELAS OROIDES; AXINELLA; AXINELLA POLYPOIDES; BACTERIA (MICROORGANISMS); CHONDROSIA RENIFORMIS; DYSIDEA; DYSIDEA AVARA; GEODIA; OSCARELLA LOBULARIS; PETROSIA; PETROSIA FICIFORMIS; TETHYA;

EID: 79957518623     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-011-9802-2     Document Type: Article

References (51)

1. Blunt JW, Copp BR, Munro MHG, Northcote PT, Prinsep MR (2010) Marine natural products. Nat Prod Rep 27: 165-237.
2. Bergquist PR (1978) Sponges. University of California Press, Berkeley.
3. Wilkinson CR (1984) Immunological evidence for the Precambrian origin of bacterial symbioses in marine sponges. Proc R Soc B 220: 509-517.
4. Schmitt S, Wehrl M, Bayer K, Siegl A, Hentschel U (2007) Marine sponges as models for commensal microbe-host interactions. Symbiosis 44: 43-50.
5. Thakur NL, Muller WEG (2005) Sponge-bacteria association: a useful model to explore symbiosis in marine invertebrates. Symbiosis 39: 109-116.
6. Taylor MW, Radax R, Steger D, Wagner M (2007) Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol Mol Biol R 71: 295-347.
7. Vacelet J, Donadey C (1977) Electron-microscope study of association between some sponges and bacteria. J Exp Mar Biol Ecol 30: 301-314.
8. Hentschel U, Usher KM, Taylor MW (2006) Marine sponges as microbial fermenters. FEMS Microbiol Ecol 55: 167-177.
9. Ribes M, Coma R, Gili J-M (1999) Seasonal variation of particulate organic carbon, dissolved organic carbon and the contribution of microbial communities to the live particulate organic carbon in a shallow near-bottom ecosystem at the northwestern Mediterranean sea. J Plankton Res 21: 1077-1100.
10. Friedrich AB, Fischer I, Proksch P, Hacker H, Hentschel U (2001) Temporal variation of the microbial community associated with the Mediterranean sponge Aplysina aerophoba. FEMS Microbiol Ecol 38: 105-113.
11. Hentschel U, Fieseler L, Wehrl M, Gernert C, Steinert M, Hacker J, Horn M (2003) Microbial diversity of marine sponges. In: Müller WEG (ed) Marine molecular biotechnology-sponges (Porifera). Springer, Berlin, pp 59-88.
12. Webster NS, Hill RT (2001) The culturable microbial community of the Great Barrier Reef sponge Rhopaloeides odorabile is dominated by an alpha-Proteobacterium. Mar Biol 138: 843-851.
13. Weisz JB, Lindquist N, Martens CS (2008) Do associated microbial abundances impact marine demosponge pumping rates and tissue densities? Oecologia 155: 367-376.
14. Hentschel U, Hopke J, Horn M, Friedrich AB, Wagner M, Hacker J, Moore BS (2002) Molecular evidence for a uniform microbial community in sponges from different oceans. Appl Environ Microbiol 68: 4431-4440.
15. Hill M, Hill A, Lopez N, Harriott O (2006) Sponge-specific bacterial symbionts in the Caribbean sponge, Chondrilla nucula (Demospongiae, Chondrosida). Mar Biol 148: 1221-1230.
16. Lafi FF, Garson MJ, Fuerst JA (2005) Culturable bacterial symbionts isolated from two distinct sponge species (Pseudoceratina clavata and Rhabdastrella globostellata) from the Great Barrier Reef display similar phylogenetic diversity. Microb Ecol 50: 213-220.
17. Fieseler L, Horn M, Wagner M, Hentschel U (2004) Discovery of the novel candidate phylum "Poribacteria" in marine sponges. Appl Environ Microbiol 70: 3724-3732.
18. Thoms C, Horn M, Wagner M, Henschel U, Proksch P (2003) Monitoring microbial diversity and natural product profiles of the sponge Aplysina cavernicola following transplantation. Mar Biol 142: 685-692.
19. Friedrich AB, Merkert H, Fendert T, Hacker J, Proksch P, Hentschel U (1999) Microbial diversity in the marine sponge Aplysina cavernicola (formerly Verongia cavernicola) analyzed by fluorescence in situ hybridisation (FISH). Mar Biol 134: 461-470.
20. Gerce B, Schwartz T, Voigt M, Ruhle S, Kirchen S, Putz A, Proksch P, Obst U, Syldatk C, Hausmann R (2009) Morphological, bacterial, and secondary metabolite changes of Aplysina aerophoba upon long-term maintenance under artificial conditions. Microb Ecol 58: 865-878.
21. Thakur NL, Anil AC, Muller WEG (2004) Culturable epibacteria of the marine sponge Ircinia fusca: temporal variations and their possible role in the epibacterial defense of the host. Aquat Microb Ecol 37: 295-304.
22. Lee OO, Lau SCK, Qian PY (2006) Consistent bacterial community structure associated with the surface of the sponge Mycale adhaerens bowerbank. Microb Ecol 52: 693-707.
23. Lee OO, Qian PY (2004) Potential control of bacterial epibiosis on the surface of the sponge Mycale adhaerens. Aquat Microb Ecol 34: 11-21.
24. Lee OO, Lau SCK, Qian PY (2006) Defense against epibiosis in the sponge Mycale adhaerens: modulating the bacterial community associated with its surface. Aquat Microb Ecol 43: 55-65.
25. Dobretsov S, Dahms HU, Tsoi MY, Qian PY (2005) Chemical control of epibiosis by Hong Kong sponges: the effect of sponge extracts on micro- and macrofouling communities. Mar Ecol Prog Ser 297: 119-129.
26. Schlaeppy ML, Schottner SI, Lavik G, Kuypers MMM, de Beer D, Hoffmann F (2010) Evidence of nitrification and denitrification in high and low microbial abundance sponges. Mar Biol 157: 593-602.
27. Hoffmann F, Larsen O, Thiel V, Rapp HT, Pape T, Michaelis W, Reitner J (2005) An anaerobic world in sponges. Geomicrobiol J 22: 1-10.
28. Sipkema D, Blanch HW (2010) Spatial distribution of bacteria associated with the marine sponge Tethya californiana. Mar Biol 157: 627-638.
29. Thiel V, Neulinger SC, Staufenberger T, Schmaljohann R, Imhoff JF (2007) Spatial distribution of sponge-associated bacteria in the Mediterranean sponge Tethya aurantium. FEMS Microbiol Ecol 59: 47-63.
30. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
31. Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
32. Clarke KR, Warwick RM (2001) Changes in marine communities: an approach to statistical analysis and interpretation. Primer-E Ltd, Plymouth.
33. Clarke KR (1993) Nonparametric multivariate analyses of changes in community structure. Aust J Ecol 18: 117-143.
34. Hurst LD, Merchant AR (2001) High guanine-cytosine content is not an adaptation to high temperature: a comparative analysis amongst prokaryotes. Proc Biol Sci 268: 493-497.
35. Galtier N, Lobry JR (1997) Relationships between genomic G+C content, RNA secondary structures, and optimal growth temperature in prokaryotes. J Mol Evol 44: 632-636.
36. Bayer K, Schmitt S, Henschel U (2007) Microbial nitrification in Mediterranean sponges: possible involvement of ammonium-oxidizing Betaproteobacteria. In: Custódio MR, Lôbo-Hajdu G, Hajdu E, Muricy G (eds) Porifera research-biodiversity, innovation and sustainability-2007, vol SérieLivros 28. Museu Nacional, Rio de Janeiro, pp 165-171.
37. Weisz JB, Hentschel U, Lindquist N, Martens CS (2007) Linking abundance and diversity of sponge-associated microbial communities to metabolic differences in host sponges. Mar Biol 152: 475-483.
38. Maldonado M (2007) Intergenerational transmission of symbiotic bacteria in oviparous and viviparous demosponges, with emphasis on intracytoplasmically-compartmented bacterial types. J Mar Biol Assoc UK 87: 1701-1713.
39. Muyzer G, Dewaal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S ribosomal-RNA. Appl Environ Microbiol 59: 695-700.
40. Fromin N, Hamelin J, Tarnawski S, Roesti D, Jourdain-Miserez K, Forestier N, Teyssier-Cuvelle S, Gillet F, Aragno M, Rossi P (2002) Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environ Microbiol 4: 634-643.
41. Wahl M, Jensen PR, Fenical W (1994) Chemical control of bacterial epibiosis on ascidians. Mar Ecol Prog Ser 110: 45-57.
42. Guenther J, Walker-Smith G, Waren A, De Nys R (2007) Fouling-resistant surfaces of tropical sea stars. Biofouling 23: 413-418.
43. Lachnit T, Blumel M, Imhoff JF, Wahl M (2009) Specific epibacterial communities on macroalgae: phylogeny matters more than habitat. Aquat Biol 5: 181-186.
44. Jones PR, Cottrell MT, Kirchman DL, Dexter SC (2007) Bacterial community structure of biofilms on artificial surfaces in an estuary. Microb Ecol 53: 153-162.
45. Lee JW, Nam JH, Kim YH, Lee KH, Lee DH (2008) Bacterial communities in the initial stage of marine biofilm formation on artificial surfaces. J Microbiol 46: 174-182.
46. Dang HY, Li TG, Chen MN, Huang GQ (2008) Cross-ocean distribution of Rhodobacterales bacteria as primary surface colonizers in temperate coastal marine waters. Appl Environ Microbiol 74: 52-60.
47. Chelossi E, Milanese M, Milano A, Pronzato R, Riccardi G (2004) Characterisation and antimicrobial activity of epibiotic bacteria from Petrosia ficiformis (Porifera, Demospongiae). J Exp Mar Biol Ecol 309: 21-33.
48. Lau SCK, Tsoi MMY, Li XC, Dobretsov S, Plakhotnikova Y, Wong PK, Qian PY (2005) Pseudoalteromonas spongiae sp nov., a novel member of the gamma-Proteobacteria isolated from the sponge Mycale adhaerens in Hong Kong waters. Int J Syst Evol Microbiol 55: 1593-1596.
49. Ivanova EP, Shevchenko LS, Sawabe TL, Lysenko AM, Svetashev VI, Gorshkova NM, Satomi M, Christen R, Mikhailov VV (2002) Pseudoalteromonas maricaloris sp nov., isolated from an Australian sponge, and reclassification of [Pseudoalteromonas aurantia] NCIMB 2033 as Pseudoalteromonas flavipulchra sp nov. Int J Syst Evol Microbiol 52: 263-271.
50. Lee OO, Qian PY (2003) Chemical control of bacterial epibiosis and larval settlement of Hydroides elegans in the red sponge Mycale adherens. Biofouling 19: 171-180.
51. Holmstrom C, Kjelleberg S (1999) Marine Pseudoalteromonas species are associated with higher organisms and produce biologically active extracellular agents. FEMS Microbiol Ecol 30: 285-293.