-
1
-
-
52949133356
-
Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina aerophoba
-
Bayer K, Schmitt S, Hentschel U (2008) Physiology, phylogeny and in situ evidence for bacterial and archaeal nitrifiers in the marine sponge Aplysina aerophoba. Environ Microbiol 10: 2942-2955.
-
(2008)
Environ Microbiol
, vol.10
, pp. 2942-2955
-
-
Bayer, K.1
Schmitt, S.2
Hentschel, U.3
-
3
-
-
56249111963
-
Light inside sponges
-
Brümmer F, Pfannkuchen M, Baltz A, Hauser T, Thiel V (2008) Light inside sponges. J Exp Mar Biol Ecol 367: 61-64.
-
(2008)
J Exp Mar Biol Ecol
, vol.367
, pp. 61-64
-
-
Brümmer, F.1
Pfannkuchen, M.2
Baltz, A.3
Hauser, T.4
Thiel, V.5
-
4
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana J (2000) Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17: 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
5
-
-
4344684791
-
Characterisation and antimicrobial activity of epibiotic bacteria from Petrosia ficiformis
-
Chelossi E, Milanese M, Milano A, Pronzato R, Riccardi G (2004) Characterisation and antimicrobial activity of epibiotic bacteria from Petrosia ficiformis. J Exp Mar Biol Ecol 309: 21-33.
-
(2004)
J Exp Mar Biol Ecol
, vol.309
, pp. 21-33
-
-
Chelossi, E.1
Milanese, M.2
Milano, A.3
Pronzato, R.4
Riccardi, G.5
-
7
-
-
0034142130
-
Highlights of marine natural products chemistry (1972-1999)
-
Faulkner DJ (2000) Highlights of marine natural products chemistry (1972-1999). Nat Prod Rep 17: 1-6.
-
(2000)
Nat Prod Rep
, vol.17
, pp. 1-6
-
-
Faulkner, D.J.1
-
8
-
-
0030762263
-
Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils
-
Felske A, Rheims H, Woltherink A, Stackebrandt E, Akkermans ADL (1997) Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils. Microbiology 143: 2983-2989.
-
(1997)
Microbiology
, vol.143
, pp. 2983-2989
-
-
Felske, A.1
Rheims, H.2
Woltherink, A.3
Stackebrandt, E.4
Akkermans, A.D.L.5
-
9
-
-
0035956590
-
Temporal variation of the microbial community associated with the mediterranean sponge Aplysina aerophoba
-
Friedrich AB, Fischer I, Proksch P, Hacker J, Hentschel U (2001) Temporal variation of the microbial community associated with the mediterranean sponge Aplysina aerophoba. FEMS Microbiol Ecol 38: 105-113.
-
(2001)
FEMS Microbiol Ecol
, vol.38
, pp. 105-113
-
-
Friedrich, A.B.1
Fischer, I.2
Proksch, P.3
Hacker, J.4
Hentschel, U.5
-
10
-
-
0028178612
-
Siliceous spicules of Tethya seychellensis (Porifera) support the growth of a green alga-a possible light conducting system
-
Gaino E, Sará M (1994) Siliceous spicules of Tethya seychellensis (Porifera) support the growth of a green alga-a possible light conducting system. Mar Ecol Prog Ser 108: 147-151.
-
(1994)
Mar Ecol Prog Ser
, vol.108
, pp. 147-151
-
-
Gaino, E.1
Sará, M.2
-
11
-
-
0034870192
-
Quantifying biodiversity: Procedures and pitfalls in the measurement and comparison of species richness
-
Gotelli NJ, Colwell RK (2001) Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness. Ecol Lett 4: 379-391.
-
(2001)
Ecol Lett
, vol.4
, pp. 379-391
-
-
Gotelli, N.J.1
Colwell, R.K.2
-
12
-
-
33746665216
-
Separation of two cell signalling molecules from a symbiotic sponge that modify algal carbon metabolism
-
Grant AJ, Trautman DA, Menz I, Hinde R (2006) Separation of two cell signalling molecules from a symbiotic sponge that modify algal carbon metabolism. Biochem Biophys Res Commun 348: 92-98.
-
(2006)
Biochem Biophys Res Commun
, vol.348
, pp. 92-98
-
-
Grant, A.J.1
Trautman, D.A.2
Menz, I.3
Hinde, R.4
-
13
-
-
33845286513
-
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
-
Hallam SJ, Konstantinidis KT, Putnam N, Schleper C, Watanabe Y, Sugahara J, Preston C, De la Torre J, Richardson PM, DeLong EF (2006) Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci 103: 18296-18301.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 18296-18301
-
-
Hallam, S.J.1
Konstantinidis, K.T.2
Putnam, N.3
Schleper, C.4
Watanabe, Y.5
Sugahara, J.6
Preston, C.7
de La Torre, J.8
Richardson, P.M.9
Delong, E.F.10
-
14
-
-
0036729439
-
Molecular evidence for a uniform microbial community in sponges from different oceans
-
Hentschel U, Hopke J, Horn M, Friedrich AB, Wagner M, Hacker J, Moore BS (2002) Molecular evidence for a uniform microbial community in sponges from different oceans. Appl Environ Microbiol 68: 4431-4440.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4431-4440
-
-
Hentschel, U.1
Hopke, J.2
Horn, M.3
Friedrich, A.B.4
Wagner, M.5
Hacker, J.6
Moore, B.S.7
-
15
-
-
19044378447
-
Microbial diversity of marine sponges
-
W. E. G. Müller (Ed.), Berlin: Springer
-
Hentschel U, Fieseler L, Wehrl M, Gernert C, Steinert M, Hacker J, Horn M (2003) Microbial diversity of marine sponges. In: Müller WEG (ed) Marine molecular biotechnology. Springer, Berlin, pp 59-88.
-
(2003)
Marine Molecular Biotechnology
, pp. 59-88
-
-
Hentschel, U.1
Fieseler, L.2
Wehrl, M.3
Gernert, C.4
Steinert, M.5
Hacker, J.6
Horn, M.7
-
16
-
-
33645366713
-
Sponge-specific bacterial symbionts in the Caribbean sponge, Chondrila nucula (Demospongia, Chondrosida)
-
Hill M, Hill A, Lopez N, Harriott O (2006) Sponge-specific bacterial symbionts in the Caribbean sponge, Chondrila nucula (Demospongia, Chondrosida). Mar Biol 148: 1221-1230.
-
(2006)
Mar Biol
, vol.148
, pp. 1221-1230
-
-
Hill, M.1
Hill, A.2
Lopez, N.3
Harriott, O.4
-
17
-
-
17744385297
-
An anaerobic world in sponges
-
Hoffmann F, Larsen O, Thiel V, Rapp HT, Pape T, Michaelis W, Reitner J (2005) An anaerobic world in sponges. Geomicrobiol J 22: 1-10.
-
(2005)
Geomicrobiol J
, vol.22
, pp. 1-10
-
-
Hoffmann, F.1
Larsen, O.2
Thiel, V.3
Rapp, H.T.4
Pape, T.5
Michaelis, W.6
Reitner, J.7
-
18
-
-
39649111529
-
Oxygen dynamics and transport in the Mediterranean sponge Aplysina aerophoba
-
Hoffmann F, Røy H, Bayer K, Hentschel U, Pfannkuchen M, Brümmer F, De Beer D (2008) Oxygen dynamics and transport in the Mediterranean sponge Aplysina aerophoba. Mar Biol 153: 1257-1264.
-
(2008)
Mar Biol
, vol.153
, pp. 1257-1264
-
-
Hoffmann, F.1
Røy, H.2
Bayer, K.3
Hentschel, U.4
Pfannkuchen, M.5
Brümmer, F.6
de Beer, D.7
-
19
-
-
69949098191
-
Complex nitrogen cycling in the sponge Geodia barretti
-
doi: 10.1111/j.1462-2920.2009.01944.x
-
Hoffmann F, Radax R, Woebken D, Holtappels M, Lavik G, Rapp HT, Schläppy ML, Schleper C, Kuypers MMM (2009) Complex nitrogen cycling in the sponge Geodia barretti. Environ Microbiol. doi: 10.1111/j.1462-2920.2009.01944.x.
-
(2009)
Environ Microbiol
-
-
Hoffmann, F.1
Radax, R.2
Woebken, D.3
Holtappels, M.4
Lavik, G.5
Rapp, H.T.6
Schläppy, M.L.7
Schleper, C.8
Kuypers, M.M.M.9
-
20
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber T, Faulkner G, Hugenholtz P (2004) Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20: 2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
21
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
-
(2001)
Bioinformatics
, vol.17
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
22
-
-
0000752502
-
The nonconcept of species diversity: A critique and alternative parameters
-
Hurlbert S (1971) The nonconcept of species diversity: a critique and alternative parameters. Ecology 52: 577-586.
-
(1971)
Ecology
, vol.52
, pp. 577-586
-
-
Hurlbert, S.1
-
23
-
-
44849090313
-
Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome
-
Kennedy J, Codling CE, Jones BV, Dobson ADW, Marchesi JR (2008) Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome. Environ Microbiol 10: 1888-1902.
-
(2008)
Environ Microbiol
, vol.10
, pp. 1888-1902
-
-
Kennedy, J.1
Codling, C.E.2
Jones, B.V.3
Dobson, A.D.W.4
Marchesi, J.R.5
-
24
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt and M. Goodfellows (Eds.), New York: John Wiley
-
Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellows M (eds) Nucleic acid techniques in bacterial systematics. John Wiley, New York, pp 115-175.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
25
-
-
0345816862
-
Microbial symbiosis in marine sponges
-
Lee YK, Lee JH, Lee HK (2001) Microbial symbiosis in marine sponges. J Microbiol 39: 254-264.
-
(2001)
J Microbiol
, vol.39
, pp. 254-264
-
-
Lee, Y.K.1
Lee, J.H.2
Lee, H.K.3
-
26
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig W, Strunk O, Westram R, Richter L, Meier H, Yadhukumar, Buchner A, Lai T, Steppi S, Jobb G, Forster W, Brettske I, Gerber S, Ginhart AW, Gross O, Grumann S, Hermann S, Jost R, Konig A, Liss T, Lussmann R, May M, Nonhoff B, Reichel B, Strehlow R, Stamatakis A, Stuckmann N, Vilbig A, Lenke M, Ludwig T, Bode A, Schleifer KH (2004) ARB: a software environment for sequence data. Nucleic Acids Res 32: 1363-1371.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1363-1371
-
-
Ludwig, W.1
Strunk, O.2
Westram, R.3
Richter, L.4
Meier, H.5
Yadhukumar6
Buchner, A.7
Lai, T.8
Steppi, S.9
Jobb, G.10
Forster, W.11
Brettske, I.12
Gerber, S.13
Ginhart, A.W.14
Gross, O.15
Grumann, S.16
Hermann, S.17
Jost, R.18
Konig, A.19
Liss, T.20
Lussmann, R.21
May, M.22
Nonhoff, B.23
Reichel, B.24
Strehlow, R.25
Stamatakis, A.26
Stuckmann, N.27
Vilbig, A.28
Lenke, M.29
Ludwig, T.30
Bode, A.31
Schleifer, K.H.32
more..
-
27
-
-
2942558424
-
Phylogenetic and ecological analysis of novel marine Stramenopiles
-
Massana R, Castresana J, Balagué V, Guillou L, Romari K, Groisillier A, Valentin K, Pedrós-Alió C (2004) Phylogenetic and ecological analysis of novel marine Stramenopiles. Appl Environ Microbiol 70: 3528-3534.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 3528-3534
-
-
Massana, R.1
Castresana, J.2
Balagué, V.3
Guillou, L.4
Romari, K.5
Groisillier, A.6
Valentin, K.7
Pedrós-Alió, C.8
-
28
-
-
46149112822
-
Phylogenetic diversity and spatial distribution of the microbial community associated with the Caribbean deep-water sponge Polymastia cf corticata by 16S rRNA, aprA, and amoA gene analysis
-
Meyer B, Kuever J (2008) Phylogenetic diversity and spatial distribution of the microbial community associated with the Caribbean deep-water sponge Polymastia cf corticata by 16S rRNA, aprA, and amoA gene analysis. Microb Ecol 56: 306-321.
-
(2008)
Microb Ecol
, vol.56
, pp. 306-321
-
-
Meyer, B.1
Kuever, J.2
-
29
-
-
16544394068
-
Oxygen-controlled bacterial growth in the sponge Suberites domuncula: Toward a molecular understanding of the symbiotic relationships between sponge and bacteria
-
Müller WEG, Grebenjuk VA, Thakur NL, Thakur AN, Batel R, Krasko A, Müller IM, Breter HJ (2004) Oxygen-controlled bacterial growth in the sponge Suberites domuncula: toward a molecular understanding of the symbiotic relationships between sponge and bacteria. Appl Environ Microbiol 70: 2332-2341.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 2332-2341
-
-
Müller, W.E.G.1
Grebenjuk, V.A.2
Thakur, N.L.3
Thakur, A.N.4
Batel, R.5
Krasko, A.6
Müller, I.M.7
Breter, H.J.8
-
30
-
-
0035493446
-
Sponge-microbe associations and their importance for sponge bioprocess engineering
-
Osinga R, Armstrong E, Burgess JG, Hoffmann F, Reitner J, Schumann-Kindel G (2001) Sponge-microbe associations and their importance for sponge bioprocess engineering. Hydrobiologia 461: 55-62.
-
(2001)
Hydrobiologia
, vol.461
, pp. 55-62
-
-
Osinga, R.1
Armstrong, E.2
Burgess, J.G.3
Hoffmann, F.4
Reitner, J.5
Schumann-Kindel, G.6
-
31
-
-
32044431630
-
Investigation of oscillatoria spongeliae-dominated bacterial communities in four Dictyoceratid sponges
-
Ridley CP, Faulkner DJ, Haygood MG (2005) Investigation of oscillatoria spongeliae-dominated bacterial communities in four Dictyoceratid sponges. Appl Environ Microbiol 71: 7366-7375.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7366-7375
-
-
Ridley, C.P.1
Faulkner, D.J.2
Haygood, M.G.3
-
33
-
-
73349122019
-
Biological characterization of H. (?gellius) sp.: Sponge and symbionts
-
Sipkema D, Holmes B, Nichols SA, Blanch HW (2009) Biological characterization of H. (?gellius) sp.: sponge and symbionts. Microb Ecol 58: 903-920.
-
(2009)
Microb Ecol
, vol.58
, pp. 903-920
-
-
Sipkema, D.1
Holmes, B.2
Nichols, S.A.3
Blanch, H.W.4
-
34
-
-
33947302827
-
Taxonomic parameters revisited: Tarnished gold standards
-
Stackebrandt E, Ebers J (2006) Taxonomic parameters revisited: tarnished gold standards. Microbiol Today 33: 152-155.
-
(2006)
Microbiol Today
, vol.33
, pp. 152-155
-
-
Stackebrandt, E.1
Ebers, J.2
-
35
-
-
0035208354
-
Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton
-
Suzuki MT, Béjà O, Taylor LT, DeLong EF (2001) Phylogenetic analysis of ribosomal RNA operons from uncultivated coastal marine bacterioplankton. Environ Microbiol 3: 323-331.
-
(2001)
Environ Microbiol
, vol.3
, pp. 323-331
-
-
Suzuki, M.T.1
Béjà, O.2
Taylor, L.T.3
Delong, E.F.4
-
36
-
-
12244263975
-
Phylogenetic screening of ribosomal RNA gene-containing clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay
-
Suzuki MT, Preston CM, Béjà O, De la Torre JR, Steward GF, DeLong EF (2004) Phylogenetic screening of ribosomal RNA gene-containing clones in bacterial artificial chromosome (BAC) libraries from different depths in Monterey Bay. Microb Ecol 48: 473-488.
-
(2004)
Microb Ecol
, vol.48
, pp. 473-488
-
-
Suzuki, M.T.1
Preston, C.M.2
Béjà, O.3
de La Torre, J.R.4
Steward, G.F.5
Delong, E.F.6
-
38
-
-
1142306012
-
Host specificity in marine sponge-associated bacteria and potential implications for marine microbial diversity
-
Taylor MW, Schupp PJ, Dahllöf I, Kjelleberg S, Steinberg PD (2004) Host specificity in marine sponge-associated bacteria and potential implications for marine microbial diversity. Environ Microbiol 6: 121-130.
-
(2004)
Environ Microbiol
, vol.6
, pp. 121-130
-
-
Taylor, M.W.1
Schupp, P.J.2
Dahllöf, I.3
Kjelleberg, S.4
Steinberg, P.D.5
-
39
-
-
34250733462
-
Sponge-associated microorganisms: Evolution, ecology and biotechnological potential
-
Taylor MW, Radax R, Steger D, Wagner M (2007) Sponge-associated microorganisms: evolution, ecology and biotechnological potential. Microbiol Mol Biol Rev 71: 295-347.
-
(2007)
Microbiol Mol Biol Rev
, vol.71
, pp. 295-347
-
-
Taylor, M.W.1
Radax, R.2
Steger, D.3
Wagner, M.4
-
40
-
-
33845606325
-
Spatial distribution of sponge-associated bacteria in the Mediterranean sponge Tethya aurantium
-
Thiel V, Neulinger SC, Staufenberger T, Schmaljohann R, Imhoff JF (2007) Spatial distribution of sponge-associated bacteria in the Mediterranean sponge Tethya aurantium. FEMS Microbiol Ecol 59: 47-63.
-
(2007)
FEMS Microbiol Ecol
, vol.59
, pp. 47-63
-
-
Thiel, V.1
Neulinger, S.C.2
Staufenberger, T.3
Schmaljohann, R.4
Imhoff, J.F.5
-
41
-
-
33645027091
-
Bacterial diversity in the breadcrumb sponge Halichondria panicea (Pallas)
-
Wichels A, Würtz S, Döpke H, Schütt C, Gerdts G (2006) Bacterial diversity in the breadcrumb sponge Halichondria panicea (Pallas). FEMS Microbiol Ecol 56: 102-118.
-
(2006)
FEMS Microbiol Ecol
, vol.56
, pp. 102-118
-
-
Wichels, A.1
Würtz, S.2
Döpke, H.3
Schütt, C.4
Gerdts, G.5
-
42
-
-
0012919343
-
Nutrient translocation from green algal symbionts to the freshwater sponge Ephydatia fluviatilis
-
Wilkinson CR (1980) Nutrient translocation from green algal symbionts to the freshwater sponge Ephydatia fluviatilis. Hydrobiologia 75: 241-250.
-
(1980)
Hydrobiologia
, vol.75
, pp. 241-250
-
-
Wilkinson, C.R.1
-
43
-
-
0000694096
-
Nutrition of marine sponges. Involvement of symbiotic bacteria in the uptake of dissolved carbon
-
In: Smith DC, Tiffon Y (eds), Pergamon
-
Wilkinson CR, Garrone R (1980) Nutrition of marine sponges. Involvement of symbiotic bacteria in the uptake of dissolved carbon. In: Smith DC, Tiffon Y (eds) Nutrition in the lower metazoa. Pergamon, pp 157-161.
-
(1980)
Nutrition in the Lower Metazoa
, pp. 157-161
-
-
Wilkinson, C.R.1
Garrone, R.2
-
44
-
-
33750387249
-
Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion
-
Ph. D. dissertation, UT Austin, USA
-
Zwickl DJ (2006) Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph. D. dissertation, UT Austin, USA.
-
(2006)
-
-
Zwickl, D.J.1
|