Cross-ocean distribution of Rhodobacterales bacteria as primary surface colonizers in temperate coastal marine waters

Applied and Environmental Microbiology

Volumn 74, Issue 1, 2008, Pages 52-60

  Dang, Hongyue ^a   Li, Tiegang ^a   Chen, Mingna ^a   Huang, Guiqiao ^b  

^a INSTITUTE OF OCEANOLOGY   (China)

^b CENTRAL IRON AND STEEL RESEARCH INSTITUTE   (China)

Author keywords

[No Author keywords available]

Indexed keywords

BIOFILMS; GENES; POLYVINYL CHLORIDES; RNA; WATER;

COASTAL MARINE WATERS; RHODOBACTERALES BACTERIA; SURFACE COLONIZERS;

BACTERIA;

GLASS; POLY(METHYL METHACRYLATE); POLYVINYLCHLORIDE; RIBOSOME RNA; RNA 16S; SEA WATER;

BACTERIUM; BIOFILM; COASTAL WATER; COLONIZATION; ECOLOGICAL MODELING; MARINE ENVIRONMENT; MICROBIAL COMMUNITY; PRIMARY SUCCESSION; RNA; SEAWATER; TEMPERATE ENVIRONMENT;

AQUATIC ENVIRONMENT; ARTICLE; BACTERIAL COLONIZATION; BIOFILM; CLUSTER ANALYSIS; COASTAL WATERS; CONCEPTUAL FRAMEWORK; GENE AMPLIFICATION; GENE SEQUENCE; MATERIALS TESTING; MICROBIAL COMMUNITY; NONHUMAN; NUCLEOTIDE SEQUENCE; OCEAN ENVIRONMENT; PHYLOGENY; RHODOBACTERALES; RNA GENE; ROSEOBACTER; STRUCTURE ACTIVITY RELATION; SURFACE PROPERTY;

ALPHAPROTEOBACTERIA; ATLANTIC OCEAN; BIODIVERSITY; BIOFILMS; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; MOLECULAR SEQUENCE DATA; PACIFIC OCEAN; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA;

ASIA; CHINA; EURASIA; FAR EAST; PACIFIC OCEAN; PACIFIC OCEAN (WEST); QINGDAO; SHANDONG;

BACTERIA (MICROORGANISMS); HARNESS; RHODOBACTERALES; ROSEOBACTER;

EID: 37849003820     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.01400-07     Document Type: Article

References (63)

1. Alonso, C., and J. Pernthaler. 2006. Concentration-dependent patterns of leucine incorporation by coastal picoplankton. Appl. Environ. Microbiol. 72:2141-2147.
2. Alonso, C., and J. Pernthaler. 2006. Roseobacter and SAR11 dominate microbial glucose uptake in coastal North Sea waters. Environ. Microbiol. 8:2022-2030.
3. Alonso-Saez, L., and J. M. Gasol. 2007. Seasonal variations in the contributions of different bacterial groups to the uptake of low-molecular-weight compounds in northwestern Mediterranean coastal waters. Appl. Environ. Microbiol. 73:3528-3535.
4. Altschul, S., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
5. Bakker, D. P., H. J. Busscher, J. van Zanten, J. de Vries, J. W. Klijnstra, and H. C. van der Mei. 2004. Multiple linear regression analysis of bacterial deposition to polyurethane coatings after conditioning film formation in the marine environment. Microbiology 150:1779-1784.
6. Beech, I. B., J. A. Sunner, and K. Hiraoka. 2005. Microbe-surface interactions in biofouling and biocorrosion processes. Int. Microbiol. 8:157-168.
7. Bhaskar, P. V., and N. B. Bhosle. 2005. Microbial extracellular polymeric substances in marine biogeochemical processes. Curr. Sci. 88:45-53.
8. Brinkhoff, T., G. Bach, T. Heidorn, L. Liang, A. Schlingloff, and M. Simon. 2004. Antibiotic production by a Roseobacter clade-affiliated species from the German Wadden Sea and its antagonistic effects on indigenous isolates. Appl. Environ. Microbiol. 70:2560-2565.
9. Brown, M. R. W., and J. Barker. 1999. Unexplored reservoirs of pathogenic bacteria: protozoa and biofilms. Trends Microbiol. 7:46-50.
10. Bruhn, J. B., K. F. Nielsen, M. Hjelm, M. Hansen, J. Bresciani, S. Schulz, and L. Gram. 2005. Ecology, inhibitory activity, and morphogenesis of a marine antagonistic bacterium belonging to the Roseobacter clade. Appl. Environ. Microbiol. 71:7263-7270.
11. Bruhn, J. B., L. Gram, and R. Belas. 2007. Production of antibacterial compounds and biofilm formation by Roseobacter species are influenced by culture conditions. Appl. Environ. Microbiol. 73:442-450.
12. Buchan, A., J. M. Gonzalez, and M. A. Moran. 2005. Overview of the marine Roseobacter lineage. Appl. Environ. Microbiol. 71:5665-5677.
13. Costerton, J. W., K.-I. Cheng, G. G. Geesey, T. I. Ladd, N. C. Nickel, M. Dosgupton, and I. J. Marine. 1987. Bacterial biofilms in nature and disease. Annu. Rev. Microbiol. 41:435-464.
14. Costerton, J. W., Z. Lewandowski, D. E. Caldwell, D. R. Korber, and H. M. Lappin-Scott. 1995. Microbial biofilms. Annu. Rev. Microbiol. 49:711-745.
15. Dang, H. Y., and C. R. Lovell. 2000. Bacterial primary colonization and early succession on surfaces in marine waters as determined by amplified rRNA gene restriction analysis and sequence analysis of 16S rRNA genes. Appl. Environ. Microbiol. 66:467-475.
16. Dang, H. Y., and C. R. Lovell. 2002. Numerical dominance and phylotype diversity of marine Rhodobacter species during early colonization of submerged surfaces in coastal marine waters as determined by 16S ribosomal DNA sequence analysis and fluorescence in situ hybridization. Appl. Environ. Microbiol. 68:496-504.
17. Dang, H. Y., and C. R. Lovell. 2002. Seasonal dynamics of particle-associated and free-living marine Proteobacteria in a salt marsh tidal creek as determined using fluorescence in situ hybridization. Environ. Microbiol. 4:287-295.
18. Davey, M. E., and G. A. O'Toole. 2000. Microbial biofilms: from ecology to molecular genetics. Microbiol. Mol. Biol. Rev. 64:847-867.
19. Farrelly, V., F. A. Rainey, and E. Stackebrandt. 1995. Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl. Environ. Microbiol. 61:2798-2801.
20. Felsenstein, J. 1989. PHYLIP - phylogeny inference package (version 3.2). Cladistics 5:164-166.
21. Fletcher, M. 1996. Bacterial attachment in aquatic environments: a diversity of surfaces and adhesion strategies, p. 1-24. In M. Fletcher (ed.), Bacterial adhesion: molecular and ecological diversity. Wiley-Liss, New York, NY.
22. Gram, L., H.-P. Grossart, A. Schlingloff, and T. Kiorboe. 2002. Possible quorum sensing in marine snow bacteria: production of acylated homoserine lactones by Roseobacter strains isolated from marine snow. Appl. Environ. Microbiol. 68:4111-4116.
23. Hall-Stoodley, L., J. W. Costerton, and P. Stoodley. 2004. Bacterial biofilms: from the natural environment to infectious diseases. Nat. Rev. Microbiol. 2:95-108.
24. Hjelm, M., A. Riaza, F. Formoso, J. Melchiorsen, and L. Gram. 2004. Seasonal incidence of autochthonous antagonistic Roseobacter spp. and Vibrionaceae strains in a turbot larva (Scophthalmus maximus) rearing system. Appl. Environ. Microbiol. 70:7288-7294.
25. Jones, P. R., M. T. Cottrell, D. L. Kirchman, and S. C. Dexter. 2007. Bacterial community structure of biofilms on artificial surfaces in an estuary. Microb. Ecol. 53:153-162.
26. Katsikogianni, M., I. Spiliopoulou, D. P. Dowling, and Y. F. Missirlis. 2006. Adhesion of slime producing Staphylococcus epidermidis strains to PVC and diamond-like carbon/silver/fluorinated coatings. J. Mater. Sci. Mater. Med. 17:679-689.
27. Kolenbrander, P. E., R. N. Andersen, D. S. Blehert, P. G. Egland, J. S. Foster, and R. J. Palmer, Jr. 2002. Communication among oral bacteria. Microbiol. Mol. Biol. Rev. 66:486-505.
28. Kwon, K. K., H. S. Lee, S.-Y. Jung, J.-H. Yim, J.-H. Lee, and H. K. Lee. 2002. Isolation and identification of biofilm-forming marine bacteria on glass surfaces in Dae-Ho Dike, Korea. J. Microbiol. 40:260-266.
29. Lehman, R. M., and S. P. O'Connell. 2002. Comparison of extracellular enzyme activities and community composition of attached and free-living bacteria in porous medium columns. Appl. Environ. Microbiol. 68:1569-1575.
30. Lejeune, P. 2003. Contamination of abiotic surfaces: what a colonizing bacterium sees and how to blur it. Trends Microbiol. 11:179-184.
31. Lyautey, E., C. R. Jackson, J. Cayrou, J. L. Rols, and F. Garabetian. 2005. Bacterial community succession in natural river biofilm assemblages. Microb. Ecol. 50:589-601.
32. Magalhaes, C. M., A. A. Bordalo, and W. J. Wiebe. 2003. Intertidal biofilms on rocky substratum can play a major role in estuarine carbon and nutrient dynamics. Mar. Ecol. Prog. Scr. 258:275-281.
33. Maidak, B. L., J. R. Cole, T. G. Lilburn, C. T. Parker, Jr., P. R. Saxman, R. J. Farris, G. M. Garrity, G. J. Olsen, T. M. Schmidt, and J. M. Tiedje. 2001. The RDP-II (Ribosomal Database Project). Nucleic Acids Res. 29:173-174.
34. Marszalek, D. S., S. M. Gerchakov, and L. R. Udey. 1979. Influence of substrate composition on marine microfouling. Appl. Environ. Microbiol. 38:987-995.
35. Martens, T., L. Gram, H. P. Grossart, D. Kessler, R. Muller, M. Simon, S. C. Wenzel, and T. Brinkhoff. 2007. Bacteria of the Roseobacter clade show potential for secondary metabolite production. Microb. Ecol. 54:31-42.
36. McLean, R. J., M. B. Barnes, M. K. Windham, M. Merchant, M. R. Forstner, and C. Fuqua. 2005. Cell-cell influences on bacterial community development in aquatic biofilms. Appl. Environ. Microbiol. 71:8987-8990.
37. McLean, R. J., M. Whiteley, D. J. Stickler, and W. C. Fuqua. 1997. Evidence of autoinducer activity in naturally occurring biofilms. FEMS Microbiol. Lett. 154:259-263.
38. Molin, S., and T. Tolker-Nielsen. 2003. Gene transfer occurs with enhanced efficiency in biofilms and induces enhanced stabilisation of the biofilm structure. Curr. Opin. Biotechnol. 14:255-261.
39. Mullins, T. D., T. B. Britschgi, R. L. Krest, and S. J. Giovannoni. 1995. Genetic comparisons reveal the same unknown bacterial lineages in Atlantic and Pacific bacterioplankton communities. Limnol. Oceanogr. 40:148-158.
40. Newman, D. K., and J. F. Banfield. 2002. Geomicrobiology: how molecular-scale interactions underpin biogeochemical systems. Science 296:1071-1077.
41. Nocker, A., J. E. Lepo, and R. A. Snyder. 2004. Influence of an oyster reef on development of the microbial heterotrophic community of an estuarine biofilm. Appl. Environ. Microbiol. 70:6834-6845.
42. O'Toole, G., H. B. Kaplan, and R. Kolter. 2000. Biofilm formation as microbial development. Annu. Rev. Microbiol. 54:49-79.
43. Parsek, M. R., and P. K. Singh. 2003. Bacterial biofilms: an emerging link to disease pathogenesis. Annu. Rev. Microbiol. 57:677-701.
44. Rao, D., J. S. Webb, and S. Kjelleberg. 2005. Competitive interactions in mixed-species biofilms containing the marine bacterium Pseudoalteromonas tunicata. Appl. Environ. Microbiol. 71:1729-1736.
45. Rao, D., J. S. Webb, and S. Kjelleberg. 2006. Microbial colonization and competition on the marine alga Viva australis. Appl. Environ. Microbiol. 72:5547-5555.
46. Rickard, A. H., P. Gilbert, N. J. High, P. E. Kolenbrander, and P. S. Handley. 2003. Bacterial coaggregation: an integral process in the development of multi-species biofilms. Trends Microbiol. 11:94-100.
47. Rivera, I. N. G., E. K. Lipp, A. Gil, N. Choopun, A. Huq, and R. R. Colwell. 2003. Method of DNA extraction and application of multiplex polymerase chain reaction to detect toxigenic Vibrio cholerae O1 and O139 from aquatic ecosystems. Environ. Microbiol. 5:599-606.
48. Ruiz-Ponte, C., J. F. Samain, J. L. Sanchez, and J. L. Nicolas. 1999. The benefit of a Roseobacter species on the survival of scallop larvae. Mar. Biotechnol. 1:52-59.
49. Sambrook, J., and D. W. Russell. 2001. Molecular cloning: a laboratory manual, 3rd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
50. Shadpour, H., H. Musyimi, J. Chen, and S. A. Soper. 2006. Physiochemical properties of various polymer substrates and their effects on microchip electrophoresis performance. J. Chromatogr. A 1111:238-251.
51. Steinberg, P. D., R. De Nys, and S. Kjelleberg. 2002. Chemical cues for surface colonization. J. Chem. Ecol. 28:1935-1951.
52. Stoodley, P., K. Sauer, D. G. Davies, and J. W. Costerton. 2002. Biofilms as complex differentiated communities. Annu. Rev. Microbiol. 56:187-209.
53. Sutherland, I. W. 2001. The biofilm matrix - an immobilized but dynamic microbial environment. Trends Microbiol. 9:222-227.
54. Sutherland, I. W., K. A. Hughes, L. C. Skillman, and K. Tait. 2004. The interaction of phage and biofilms. FEMS Microbiol. Lett. 232:1-6.
55. Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
56. von Wintzingerode, F., U. B. Gobel, and E. Stackebrandt. 1997. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol. Rev. 21:213-229.
57. Wagner-Dobler, I., and H. Biebl. 2006. Environmental biology of the marine Roseobacter lineage. Annu. Rev. Microbiol. 60:255-280.
58. Wagner-Dobler, I., V. Thiel, L. Eberl, M. Allgaier, A. Bodor, S. Meyer, S. Ebner, A. Hennig, R. Pukall, and S. Schulz. 2005. Discovery of complex mixtures of novel long-chain quorum sensing signals in free-living and host-associated marine Alphaproteobacteria. Chembiochem 6:2195-2206.
59. Watnick, P., and R. Kolter. 2000. Biofilm, city of microbes. J. Bacteriol. 182:2675-2679.
60. Webster, N. S., and A. P. Negri. 2006. Site-specific variation in Antarctic marine biofilms established on artificial surfaces. Environ. Microbiol. 8:1177-1190.
61. Xavier, J. B., and K. R. Foster. 2007. Cooperation and conflict in microbial biofilms. Proc. Natl. Acad. Sci. USA 104:876-881.
62. Zhang, K., H. Choi, D. D. Dionysiou, G. A. Sorial, and D. B. Oerther. 2006. Identifying pioneer bacterial species responsible for biofouling membrane bioreactors. Environ. Microbiol. 8:433-440.
63. Zhang, X., and P. L. Bishop. 2003. Biodegradability of biofilm extracellular polymeric substances. Chemosphere 50:63-69.