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Volumn 4, Issue , 2011, Pages

Selection of reference genes for normalization of quantitative real-time PCR in organ culture of the rat and rabbit intervertebral disc

Author keywords

[No Author keywords available]

Indexed keywords

ORYCTOLAGUS CUNICULUS; RATTUS;

EID: 79957445919     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-4-162     Document Type: Article
Times cited : (46)

References (33)
  • 1
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): Trends and problems
    • DOI 10.1677/jme.0.0290023
    • Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. SA Bustin, J Mol Endocrinol 2002 29 1 23 39 10.1677/jme.0.0290023 12200227 (Pubitemid 34965744)
    • (2002) Journal of Molecular Endocrinology , vol.29 , Issue.1 , pp. 23-39
    • Bustin, S.A.1
  • 2
    • 0033775615 scopus 로고    scopus 로고
    • Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays
    • 10.1677/jme.0.0250169. 11013345
    • Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays. SA Bustin, J Mol Endocrinol 2000 25 2 169 193 10.1677/jme.0.0250169 11013345
    • (2000) J Mol Endocrinol , vol.25 , Issue.2 , pp. 169-193
    • Bustin, S.A.1
  • 3
    • 21344471138 scopus 로고    scopus 로고
    • Real-time RT-PCR normalisation; strategies and considerations
    • DOI 10.1038/sj.gene.6364190
    • Real-time RT-PCR normalisation; strategies and considerations. J Huggett K Dheda S Bustin A Zumla, Genes Immun 2005 6 4 279 284 10.1038/sj.gene.6364190 15815687 (Pubitemid 40903399)
    • (2005) Genes and Immunity , vol.6 , Issue.4 , pp. 279-284
    • Huggett, J.1    Dheda, K.2    Bustin, S.3    Zumla, A.4
  • 4
    • 53349089297 scopus 로고    scopus 로고
    • Selection of internal reference genes for SYBR green qRT-PCR studies of rhesus monkey (Macaca mulatta) tissues
    • 10.1186/1471-2199-9-78. 18782457
    • Selection of internal reference genes for SYBR green qRT-PCR studies of rhesus monkey (Macaca mulatta) tissues. K Ahn JW Huh SJ Park DS Kim HS Ha YJ Kim JR Lee KT Chang HS Kim, BMC Mol Biol 2008 9 78 10.1186/1471-2199-9-78 18782457
    • (2008) BMC Mol Biol , vol.9 , pp. 78
    • Ahn, K.1    Huh, J.W.2    Park, S.J.3    Kim, D.S.4    Ha, H.S.5    Kim, Y.J.6    Lee, J.R.7    Chang, K.T.8    Kim, H.S.9
  • 5
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: A model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • DOI 10.1158/0008-5472.CAN-04-0496
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. CL Andersen JL Jensen TF Orntoft, Cancer Res 2004 64 15 5245 5250 10.1158/0008-5472.CAN-04-0496 15289330 (Pubitemid 39006544)
    • (2004) Cancer Research , vol.64 , Issue.15 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Orntoft, T.F.3
  • 6
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • 12184808
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. J Vandesompele K De Preter F Pattyn B Poppe N Van Roy A De Paepe F Speleman, Genome Biol 2002 3 7 ESEARCH0034 12184808
    • (2002) Genome Biol , vol.3 , Issue.7
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 8
    • 1342327557 scopus 로고    scopus 로고
    • Gene therapy for degenerative disc disease
    • DOI 10.1038/sj.gt.3302200, Gene Therapy for Orthopaedics
    • Gene therapy for degenerative disc disease. S Sobajima JS Kim LG Gilbertson JD Kang, Gene Ther 2004 11 4 390 401 10.1038/sj.gt.3302200 14724681 (Pubitemid 38263089)
    • (2004) Gene Therapy , vol.11 , Issue.4 , pp. 390-401
    • Sobajima, S.1    Kim, J.S.2    Gilbertson, L.G.3    Kang, J.D.4
  • 9
    • 27944511040 scopus 로고    scopus 로고
    • Stimulation of gene expression and loss of anular architecture caused by experimental disc degeneration - An in vivo animal study
    • DOI 10.1097/01.brs.0000186591.17114.e9
    • Stimulation of gene expression and loss of anular architecture caused by experimental disc degeneration - an in vivo animal study. T Guehring GW Omlor H Lorenz H Bertram E Steck W Richter C Carstens M Kroeber, Spine (Phila Pa 1976) 2005 30 22 2510 2515 10.1097/01.brs.0000186591.17114.e9 (Pubitemid 41669086)
    • (2005) Spine , vol.30 , Issue.22 , pp. 2510-2515
    • Guehring, T.1    Omlor, G.W.2    Lorenz, H.3    Bertram, H.4    Steck, E.5    Richter, W.6    Carstens, C.7    Kroeber, M.8
  • 10
    • 0034760498 scopus 로고    scopus 로고
    • Do the intervertebral disc cells respond to different levels of hydrostatic pressure?
    • DOI 10.1016/S0268-0033(01)00080-8, PII S0268003301000808
    • Do the intervertebral disc cells respond to different levels of hydrostatic pressure? WC Hutton WA Elmer LM Bryce EE Kozlowska SD Boden M Kozlowski, Clin Biomech (Bristol, Avon) 2001 16 9 728 734 10.1016/S0268-0033(01) 00080-8 (Pubitemid 33034998)
    • (2001) Clinical Biomechanics , vol.16 , Issue.9 , pp. 728-734
    • Hutton, W.C.1    Elmer, W.A.2    Bryce, L.M.3    Kozlowska, E.E.4    Boden, S.D.5    Kozlowski, M.6
  • 11
    • 12144281256 scopus 로고    scopus 로고
    • Quantitative analysis of gene expression in a rabbit model of intervertebral disc degeneration by real-time polymerase chain reaction
    • DOI 10.1016/j.spinee.2004.05.251, PII S1529943004004875
    • Quantitative analysis of gene expression in a rabbit model of intervertebral disc degeneration by real-time polymerase chain reaction. S Sobajima AL Shimer RC Chadderdon JF Kompel JS Kim LG Gilbertson JD Kang, Spine J 2005 5 1 14 23 10.1016/j.spinee.2004.05.251 15653081 (Pubitemid 40104285)
    • (2005) Spine Journal , vol.5 , Issue.1 , pp. 14-23
    • Sobajima, S.1    Shimer, A.L.2    Chadderdon, R.C.3    Kompel, J.F.4    Kim, J.S.5    Gilbertson, L.G.6    Kang, J.D.7
  • 12
    • 35848968850 scopus 로고    scopus 로고
    • Biologic response of the intervertebral disc to static and dynamic compression in vitro
    • DOI 10.1097/BRS.0b013e318158cb61, PII 0000763220071101000003
    • Biologic response of the intervertebral disc to static and dynamic compression in vitro. DL Wang SD Jiang LY Dai, Spine (Phila Pa 1976) 2007 32 23 2521 2528 10.1097/BRS.0b013e318158cb61 (Pubitemid 350059477)
    • (2007) Spine , vol.32 , Issue.23 , pp. 2521-2528
    • Wang, D.-L.1    Jiang, S.-D.2    Dai, L.-Y.3
  • 13
    • 1442285958 scopus 로고    scopus 로고
    • Static compression induces zonal-specific changes in gene expression for extracellular matrix and cytoskeletal proteins in intervertebral disc cells in vitro
    • DOI 10.1016/j.matbio.2003.11.008, PII S0945053X03001100
    • Static compression induces zonal-specific changes in gene expression for extracellular matrix and cytoskeletal proteins in intervertebral disc cells in vitro. J Chen W Yan LA Setton, Matrix Biol 2004 22 7 573 583 10.1016/j.matbio.2003.11.008 14996437 (Pubitemid 38283781)
    • (2004) Matrix Biology , vol.22 , Issue.7 , pp. 573-583
    • Chen, J.1    Yan, W.2    Setton, L.A.3
  • 14
    • 4844225379 scopus 로고    scopus 로고
    • Anabolic and catabolic mRNA levels of the intervertebral disc vary with the magnitude and frequency of in vivo dynamic compression
    • DOI 10.1016/j.orthres.2004.04.004, PII S0736026604001020
    • Anabolic and catabolic mRNA levels of the intervertebral disc vary with the magnitude and frequency of in vivo dynamic compression. JJ Maclean CR Lee M Alini JC Iatridis, J Orthop Res 2004 22 6 1193 1200 10.1016/j.orthres.2004.04. 004 15475197 (Pubitemid 39317907)
    • (2004) Journal of Orthopaedic Research , vol.22 , Issue.6 , pp. 1193-1200
    • MacLean, J.J.1    Lee, C.R.2    Alini, M.3    Iatridis, J.C.4
  • 15
    • 0037986628 scopus 로고    scopus 로고
    • Effects of immobilization and dynamic compression on intervertebral disc cell gene expression in vivo
    • DOI 10.1097/00007632-200305150-00004
    • Effects of immobilization and dynamic compression on intervertebral disc cell gene expression in vivo. JJ MacLean CR Lee S Grad K Ito M Alini JC Iatridis, Spine (Phila Pa 1976) 2003 28 10 973 981 (Pubitemid 36583325)
    • (2003) Spine , vol.28 , Issue.10 , pp. 973-981
    • MacLean, J.J.1    Lee, C.R.2    Grad, S.3    Ito, K.4    Alini, M.5    Iatridis, J.C.6
  • 16
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations
    • DOI 10.1023/B:BILE.0000019559.84305.47
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations. MW Pfaffl A Tichopad C Prgomet TP Neuvians, Biotechnol Lett 2004 26 6 509 515 15127793 (Pubitemid 38448421)
    • (2004) Biotechnology Letters , vol.26 , Issue.6 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 17
    • 77049118791 scopus 로고    scopus 로고
    • Validation of internal reference genes for quantitative real-time PCR in a non-model organism, the yellow-necked mouse, Apodemus flavicollis
    • 10.1186/1756-0500-2-264. 20030847
    • Validation of internal reference genes for quantitative real-time PCR in a non-model organism, the yellow-necked mouse, Apodemus flavicollis. J Axtner S Sommer, BMC Res Notes 2009 2 264 10.1186/1756-0500-2-264 20030847
    • (2009) BMC Res Notes , vol.2 , pp. 264
    • Axtner, J.1    Sommer, S.2
  • 18
    • 68249144875 scopus 로고    scopus 로고
    • Quantitative evaluation and selection of reference genes in a rat model of extended liver resection
    • 19503622
    • Quantitative evaluation and selection of reference genes in a rat model of extended liver resection. W Xing M Deng J Zhang H Huang O Dirsch U Dahmen, J Biomol Tech 2009 20 2 109 115 19503622
    • (2009) J Biomol Tech , vol.20 , Issue.2 , pp. 109-115
    • Xing, W.1    Deng, M.2    Zhang, J.3    Huang, H.4    Dirsch, O.5    Dahmen, U.6
  • 19
    • 40549112638 scopus 로고    scopus 로고
    • Reference genes for normalization: A study of rat brain tissue
    • DOI 10.1002/syn.20496
    • Reference genes for normalization: a study of rat brain tissue. BE Bonefeld B Elfving G Wegener, Synapse 2008 62 4 302 309 10.1002/syn.20496 18241047 (Pubitemid 351365003)
    • (2008) Synapse , vol.62 , Issue.4 , pp. 302-309
    • Bonefeld, B.E.1    Elfving, B.2    Wegener, G.3
  • 20
    • 45849088452 scopus 로고    scopus 로고
    • Selection of reference genes for quantitative real-time PCR in a rat asphyxial cardiac arrest model
    • 10.1186/1471-2199-9-53. 18505597
    • Selection of reference genes for quantitative real-time PCR in a rat asphyxial cardiac arrest model. K Langnaese R John H Schweizer U Ebmeyer G Keilhoff, BMC Mol Biol 2008 9 53 10.1186/1471-2199-9-53 18505597
    • (2008) BMC Mol Biol , vol.9 , pp. 53
    • Langnaese, K.1    John, R.2    Schweizer, H.3    Ebmeyer, U.4    Keilhoff, G.5
  • 21
    • 33749818283 scopus 로고    scopus 로고
    • Establishment of a novel intervertebral disc/endplate culture model: Analysis of an ex vivo in vitro whole-organ rabbit culture system
    • DOI 10.1097/01.brs.0000247954.69438.ae, PII 0000763220061201000007
    • Establishment of a novel intervertebral disc/endplate culture model: analysis of an ex vivo in vitro whole-organ rabbit culture system. D Haschtmann JV Stoyanov L Ettinger LP Nolte SJ Ferguson, Spine (Phila Pa 1976) 2006 31 25 2918 2925 10.1097/01.brs.0000247954.69438.ae (Pubitemid 44885708)
    • (2006) Spine , vol.31 , Issue.25 , pp. 2918-2925
    • Haschtmann, D.1    Stoyanov, J.V.2    Ettinger, L.3    Nolte, L.-P.4    Ferguson, S.J.5
  • 22
    • 0347381010 scopus 로고    scopus 로고
    • An Organ Culture System for the Study of the Nucleus Pulposus: Description of the System and Evaluation of the Cells
    • DOI 10.1097/01.BRS.0000099384.58981.C6
    • An organ culture system for the study of the nucleus pulposus: description of the system and evaluation of the cells. MV Risbud MW Izzo CS Adams WW Arnold AS Hillibrand EJ Vresilovic AR Vaccaro TJ Albert IM Shapiro, Spine (Phila Pa 1976) 2003 28 24 2652 2658 discussion 2658-2659 10.1097/01.BRS.0000099384.58981.C6 (Pubitemid 37543468)
    • (2003) Spine , vol.28 , Issue.24 , pp. 2652-2658
    • Risbud, M.V.1    Izzo, M.W.2    Adams, C.S.3    Arnold, W.W.4    Hillibrand, A.S.5    Vresilovic, E.J.6    Vaccaro, A.R.7    Albert, T.J.8    Shapiro, I.M.9
  • 23
    • 14344255879 scopus 로고    scopus 로고
    • Metabolism of the intervertebral disc: Effects of low levels of oxygen, glucose, and pH on rates of energy metabolism of bovine nucleus pulposus cells
    • DOI 10.1097/01.brs.0000154619.38122.47
    • Metabolism of the intervertebral disc: effects of low levels of oxygen, glucose, and pH on rates of energy metabolism of bovine nucleus pulposus cells. SR Bibby DA Jones RM Ripley JP Urban, Spine (Phila Pa 1976) 2005 30 5 487 496 10.1097/01.brs.0000154619.38122.47 (Pubitemid 40293834)
    • (2005) Spine , vol.30 , Issue.5 , pp. 487-496
    • Bibby, S.R.S.1    Jones, D.A.2    Ripley, R.M.3    Urban, J.P.G.4
  • 24
    • 33744805779 scopus 로고    scopus 로고
    • The expression of hypoxia inducible factor-1̈ and apoptosis in herniated discs
    • DOI 10.1097/01.brs.0000219493.76081.d6, PII 0000763220060520000006
    • The expression of hypoxia inducible factor-1alpha and apoptosis in herniated discs. KY Ha IJ Koh PA Kirpalani YY Kim YK Cho GS Khang CW Han, Spine (Phila Pa 1976) 2006 31 12 1309 1313 10.1097/01.brs.0000219493.76081.d6 (Pubitemid 43833074)
    • (2006) Spine , vol.31 , Issue.12 , pp. 1309-1313
    • Ha, K.-Y.1    Koh, I.-J.2    Kirpalani, P.A.3    Kim, Y.-Y.4    Cho, Y.-K.5    Khang, G.-S.6    Han, C.W.7
  • 25
    • 33750560439 scopus 로고    scopus 로고
    • An in vitro organ culturing system for intervertebral disc explants with vertebral endplates: A feasibility study with ovine caudal discs
    • DOI 10.1097/01.brs.0000244620.15386.df, PII 0000763220061101000006
    • An in vitro organ culturing system for intervertebral disc explants with vertebral endplates: a feasibility study with ovine caudal discs. B Gantenbein T Grunhagen CR Lee CC van Donkelaar M Alini K Ito, Spine (Phila Pa 1976) 2006 31 23 2665 2673 10.1097/01.brs.0000244620.15386.df (Pubitemid 44673377)
    • (2006) Spine , vol.31 , Issue.23 , pp. 2665-2673
    • Gantenbein, B.1    Grunhagen, T.2    Lee, C.R.3    Van Donkelaar, C.C.4    Alini, M.5    Ito, K.6
  • 26
    • 67651154347 scopus 로고    scopus 로고
    • Effect of limited nutrition on in situ intervertebral disc cells under simulated-physiological loading
    • 10.1097/BRS.0b013e3181a0193d
    • Effect of limited nutrition on in situ intervertebral disc cells under simulated-physiological loading. S Junger B Gantenbein-Ritter P Lezuo M Alini SJ Ferguson K Ito, Spine (Phila Pa 1976) 2009 34 12 1264 1271 10.1097/BRS. 0b013e3181a0193d
    • (2009) Spine (Phila Pa 1976) , vol.34 , Issue.12 , pp. 1264-1271
    • Junger, S.1    Gantenbein-Ritter, B.2    Lezuo, P.3    Alini, M.4    Ferguson, S.J.5    Ito, K.6
  • 27
    • 46749140292 scopus 로고    scopus 로고
    • Dynamic compression effects on intervertebral disc mechanics and biology
    • 10.1097/BRS.0b013e318175cae7
    • Dynamic compression effects on intervertebral disc mechanics and biology. CL Korecki JJ MacLean JC Iatridis, Spine (Phila Pa 1976) 2008 33 13 1403 1409 10.1097/BRS.0b013e318175cae7
    • (2008) Spine (Phila Pa 1976) , vol.33 , Issue.13 , pp. 1403-1409
    • Korecki, C.L.1    MacLean, J.J.2    Iatridis, J.C.3
  • 28
    • 49249126102 scopus 로고    scopus 로고
    • Expression profiles of the pluripotency marker gene POU5F1 and validation of reference genes in rabbit oocytes and preimplantation stage embryos
    • 10.1186/1471-2199-9-67. 18662377
    • Expression profiles of the pluripotency marker gene POU5F1 and validation of reference genes in rabbit oocytes and preimplantation stage embryos. S Mamo AB Gal Z Polgar A Dinnyes, BMC Mol Biol 2008 9 67 10.1186/1471-2199-9-67 18662377
    • (2008) BMC Mol Biol , vol.9 , pp. 67
    • Mamo, S.1    Gal, A.B.2    Polgar, Z.3    Dinnyes, A.4
  • 29
    • 79959379480 scopus 로고    scopus 로고
    • GenBank. http://www.ncbi.nlm.nih.gov/GenBank/
    • GenBank
  • 30
    • 37649018768 scopus 로고    scopus 로고
    • BestKeeper Software. http://www.gene-quantification.de/bestkeeper.html
    • BestKeeper Software
  • 31
    • 84898008588 scopus 로고    scopus 로고
    • geNorm Software. http://medgen.ugent.be/∼jvdesomp/genorm/
    • GeNorm Software
  • 32
    • 84896335069 scopus 로고    scopus 로고
    • NormFinder Software. http://www.mdl.dk/publicationsnormfinder.htm
    • NormFinder Software
  • 33
    • 65549086169 scopus 로고    scopus 로고
    • Baicalein reduces inflammatory process in a rodent model of diabetic retinopathy
    • 10.1167/iovs.08-2642. 19011009
    • Baicalein reduces inflammatory process in a rodent model of diabetic retinopathy. LP Yang HL Sun LM Wu XJ Guo HL Dou MO Tso L Zhao SM Li, Invest Ophthalmol Vis Sci 2009 50 5 2319 2327 10.1167/iovs.08-2642 19011009
    • (2009) Invest Ophthalmol Vis Sci , vol.50 , Issue.5 , pp. 2319-2327
    • Yang, L.P.1    Sun, H.L.2    Wu, L.M.3    Guo, X.J.4    Dou, H.L.5    Tso, M.O.6    Zhao, L.7    Li, S.M.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.