Genomic analysis reveals Nairobi sheep disease virus to be highly diverse and present in both Africa, and in India in the form of the Ganjam virus variant

Infection, Genetics and Evolution

Volumn 11, Issue 5, 2011, Pages 1111-1120

  Yadav, Pragya D ^a,b   Vincent, Martin J ^b   Khristova, Marina ^b   Kale, Charuta ^a   Nichol, Stuart T ^b   Mishra, Akhilesh C ^a   Mourya, Devendra T ^a  

^a NATIONAL INSTITUTE OF VIROLOGY   (India)

^b NATIONAL CENTER FOR EMERGING AND ZOONOTIC INFECTIOUS DISEASES   (United States)

Author keywords

Dugbe virus; Ganjam virus; Hazara virus; Nairobi sheep disease; Nairoviruses; Nucleocapsid gene; Polymerase gene

Indexed keywords

AFRICA; AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; GENETIC VARIABILITY; GENOME ANALYSIS; GENOMIC FRAGMENT; GLYCOPROTEIN GENE; INDIA; NAIROBI SHEEP DISEASE VIRUS; NONHUMAN; NUCLEOCAPSID GENE; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; PRIORITY JOURNAL; RNA POLYMERASE GENE; VIRUS GENE; VIRUS GENOME; VIRUS NUCLEOCAPSID; VIRUS STRAIN;

AFRICA; DEMOGRAPHY; GENETIC VARIATION; GENOME, VIRAL; INDIA; NAIROBI SHEEP DISEASE VIRUS; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; TIME FACTORS;

BUNYAVIRIDAE; CAPRA HIRCUS; DHORI VIRUS; DUGBE VIRUS; HAZARA VIRUS; NAIROBI SHEEP DISEASE VIRUS; NAIROVIRUS; OVIS ARIES;

EID: 79956336039     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2011.04.001     Document Type: Article

References (44)

1. Altamura L.A., Bertolotti-Ciarlet A., Teigler J., Paragas J., Schmaljohn C.S., Doms R.W. Identification of a novel C-terminal cleavage of Crimean-Congo hemorrhagic fever virus PreGN that leads to generation of an NSM protein. J. Virol. 2007, 81:6632-6642.
2. Banerjee K. Emerging viral infections with special reference to India. Indian J. Med. Res. 1996, 103:177-200.
3. Beaty B.J., Sundin D.R., Chandler L.J., Bishop D.H.L. Evolution of bunyaviruses by genome reassortment in dually infected mosquitoes (Aedes triseriatus). Science 1985, 230:548-550.
4. Boshall J., Desai P.K., Dandawate C.N., Goverdhan M.K. Isolation of Ganjam virus from ticks Haemaphysalis intermedia. Indian J. Med. Res. 1970, 58:561-562.
5. Crabtree M.B., Sang R., Miller B.R. Kupe virus, a new virus in the family Bunyaviridae, genus Nairovirus, Kenya. Emerg. Infect. Dis. 2009, 15:147-154.
6. Dandawate C.N., Rajagopalan P.K., Pavri K.M., Work T.H. Virus isolations from mosquitoes collected in North Arcot District, Madras State and Chittoor district, Andhra Pradesh between November 1955 and October 1957. Indian J. Med. Res. 1969, 57:1420-1426.
7. Dandawate C.N., Shah K.V. Ganjam virus: A new arbovirus isolated from ticks Haemaphysalis intermidia Warburton and Nuttall, 1909 in Orissa, India. Indian J. Med. Res. 1969, 57:799-804.
8. Daubney R., Hudson J.R. Nairobi sheep disease. Parasite 1934, 23:507.
9. Davies F.G. Nairobi sheep disease in Kenya. The isolation of virus from sheep and goats, ticks and possible maintenance hosts. Hyg. Camb. 1978, 81:259-265.
10. Davies F.G. Nairobi sheep disease Kenya. The isolation of virus from goats, wild ruminants and rodents within Kenya. J. Hyg. Camb. 1978, 81:251.
11. Davies F.G., Casals J., Jesset D.M., Ochieng P. The serological relationships of Nairobi sheep disease virus. J. Comp. Pathol. 1978, 88:519-523.
12. Edelsten R.M. The distribution and prevalence of Nairobi Sheep disease and other tick-borne infections of sheep and goats in northern Somalia. Trop. Anim. Health Prod. 1975, 7(1):29-34.
13. El-Ghorr A.A., Marriott A.C., Ward V.K., Booth T.F., Higgs S., et al. Characterization of Dugbe virus by biochemical and immunochemical procedures using monoclonal antibodies. Arch. Virol. 1990, (Suppl. 1):169-179.
14. Veterinary Virology 1989, 519-530. Academic Press, New York. D. Fenner, P.A. Bachmann, E.P.J. Gibbs, F.A. Murphy, M.J. Studdert, D.O. White (Eds.).
15. Foulke R.S., Rosaxo R.R., French G.R. Structural polypeptides of Hazara virus. J. Gen. Virol. 1981, 53:169-172.
16. Ghalsasi G.R., Rodrigues F.M., Dhandawate C.N., Gupta N.P., Khasnis C.G., Pinto B.D., George S. Investigation of febrile illness in exotic and cross-bred sheep from Sheep farm, Palamner in Andra Pradesh. Indian J. Med. Res. 1981, 74:325-331.
17. Henderson W.W., Monroe M.C., St Jeor S.C., Thayer W.P., Rowe J.E., Peters C.J., Nichol S.T. Naturally occurring Sin Nombre virus genetic reassortants. Virology 1995, 214:602-610.
18. Hewson R., Anatoly G., Larissa G., Smirnova S.E., Karganova G., Jamil B., Hasan R., Chamberlain J., Christopher C. Evidence of segment reassortment in Crimean-Congo haemorrhagic fever virus. J. Gen. Virol. 2004, 85:3059-3070.
19. Hewson R., Chamberlain J., Mioulet V., Lloyd G., Hasan R., Jamil B., Gmyl A., Smirnova S.E., Gmyl L., Lukashev A., Karganova G., Clegg C. Crimean-Congo haemorrhagic fever virus: sequence analysis of the small RNA segments from a collection of strains world wide. Virus Res. 2004, 102:185-189.
20. Honig J.E., Osborne J.C., Nichol S.T. The genetic variation of viruses of the genus Nairovirus reflects the diversity of their predominant tick hosts. Virology 2004, 318:10-16.
21. Howarth J.A., Terpstra C. The propagation of Nairobi sheep diseases virus in tissue culture. J. Comp. Pathol. 1965, 4:437-441.
22. Joshi M.V., Elankumaran S., Joshi G.D., Albert A., Padbidri V.S., Manohar B.M., Ilkal M.A., Sundararaj A., Umarani U.B., Venugopalan A.T., Manickam R. A post-epizootic survey of Rift Valley Fever-like illness among sheep at Veerapuram, Chennai, Tamil Nadu. Indian J. Virol. 1998, 14:155-157.
23. Joshi M.V., Geevarghese G., Joshi G.D., Ghodke Y.S., Mourya D.T., Mishra A.C. Isolation of Ganjam virus from ticks collected off domestic animals around Pune, Maharashtra, India. J. Med. Entomol. 2005, 42:204-206.
24. Karabatsos N., Poland J.D., Emmons R.W., Mathews J.H., Calisher C.H., Wolff K.L. Antigenic variants of Colorado tick fever virus. J. Gen. Virol. 1987, 68:1463-1469.
25. Klempa B., Schmidt H.A., Ulrich R., Kaluz S., Labuda M., Meisel H., Hjelle B., Kruger D.H. Genetic interaction between distinct Dobrava hantavirus subtypes in Apodemus agrarius and A. flavicollis in nature. J. Virol. 2003, 77:804-809.
26. Lukashev A.N. Evidence for recombination in Crimean-Congo hemorrhagic fever virus. J. Gen. Virol. 2005, 86:2333-2338.
27. Marczinke B.I., Nichol S.T. Nairobi sheep disease virus, an important tick borne pathogen of sheep and goats in Africa, is also present in Asia. Virology 2002, 303:146-151.
28. Marriott A.C., Nuttall P.A. Large RNA segment of Dugbe nairovirus encodes the putative RNA polymerase. J Gen Virol. 1996, 77:1775-1780.
29. Nichol S.T. Bunyaviruses. Fields Virology 2001, 1603-1633. Lippincott Williams and Wilkins, Philadelphia. 4th ed. D.M. Knipe, P.M. Howley (Eds.).
30. Perera L.P., Peiris J.S.M., Weilgana D.J., Calisher C.H., Shope R.E. Nairobi Sheep disease virus isolated from Haemaplysalis intermedia ticks collected in Sri Lanka. Ann. Trop. Med. Parasitol. 1996, 90:91-93.
31. Pringle C.R., Lees J.F., Clark W., Elliot R. Genome subunit reassortment among bunyaviruses analysed by dot hybridization using molecularly cloned complementary DNA probes. Virology 1984, 135:244-256.
32. Rajagopalan P.K., Sreenivasan M.A., Paul S.D. Isolation of Ganjam virus from bird tick Haemaphysalis wellingtoni Nuttall and Warburton 1907. Indian J. Med. Res. 1970, 58:1195-1196.
33. Rao C.V., Dandawate C.N., Rodrigues J.J., Rao G.L., Mandke V.B., Ghalsasi G.R., Pinto B.D. Laboratory infections with Ganjam virus. Indian J. Med. Res. 1981, 74:319-324.
34. Rodriguez L.L., Owens J.H., Peters C.J., Nichol S.T. Genetic reassortment among viruses causing hantavirus pulmonary syndrome. Virology 1998, 242:99-106.
35. Schmaljohn C.S. Molecular biology of Hantaviruses. The Bunyaviridae 1996, R. M. Elliott, New York/London, pp. 63-90.
36. Schmaljohn C.S., Hooper J.W. Bunyaviridae: the viruses and their replication. Fields Virology 2001, 1581-1602. Lippincott Williams & Wilkins, Philadelphia, PA. 2nd ed. D.M. Knipe, P.M. Howley (Eds.).
37. Schmaljohn C.S., Nichol S.T. Bunyaviridae. Fields Virology. vol. 2 2007, Lippincott, Williams and Wilkins, Philadelphia, pp.1741-1790. 5th edn. D.M. Knipe, P.M. Howley (Eds.).
38. Simmons G., Wool-Lewis R.J., Baribaud F., Netter R.C., Bates P. Ebola virus glycoproteins induce global surface protein down-modulation and loss of cell adherence. J. Virol. 2002, 76:2518-2528.
39. Sudeep A.B., Jadi R.S., Mishra A.C. Ganjam virus. Indian J. Med. Res. 2009, 130:514-519.
40. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
41. Terpstra C. Nairobi sheep disease. Infectious dieases of Livestock with special reference to Southern Africa 1994, Oxford University Press, Cape Town, South Africa, pp. 718-722. J.A.W. Coetzer, G.R. Thomson, R.C. Tustin (Eds.).
42. Turell M.J., Saluzzo J.F., Tammariello R.F., Smith J.F. Generation and transmission of Rift Valley Fever viral reassortants by the mosquito Culex pipiens. J. Gen. Virol. 1990, 71:2307-2312.
43. Uruidi V., Bishop D.H. Non-random reassortment between the tripartite RNA genomes of La Crosse and snowshoe hare viruses. J. Gen. Virol. 1992, 73:2255-2265.
44. Varough M.D., Marina L.K., Pierre E.R., Thomas G.K., Stuart T.N. Crimean-Congo Hemorrhagic Fever Virus Genomics and Global Diversity. J. Virol. 2006, 80:8834-8842.