Crimean-Congo haemorrhagic fever virus: Sequence analysis of the small RNA segments from a collection of viruses world wide

Virus Research

Volumn 102, Issue 2, 2004, Pages 185-189

  Hewson, R ^a   Chamberlain, J ^a   Mioulet, V ^a   Lloyd, G ^a   Jamil, B ^b   Hasan, R ^b   Gmyl, A ^c   Gmyl, L ^c   Smirnova, S E ^c   Lukashev, A ^c   Karganova, G ^c   Clegg, C ^a,d  

^a PUBLIC HEALTH ENGLAND   (United Kingdom)

^b AGA KHAN UNIVERSITY   (Pakistan)

^c CHUMAKOV INSTITUTE OF POLIOMYELITIS AND VIRAL ENCEPHALITIDES   (Russian Federation)

^d INSTITUT PASTEUR   (France)

Author keywords

Crimean Congo haemorrhagic fever virus; Phylogenetic analysis; Small RNA segment; Subtypes

Indexed keywords

AFRICA; ASIA; BIRD; BUNYAVIRUS; CONFERENCE PAPER; DATA BASE; EPIDEMIC; EUROPE; HEMORRHAGIC FEVER; LIVESTOCK; MIDDLE EAST; MORTALITY; NAIRO VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PAKISTAN; PHYLOGENY; POPULATION MIGRATION; PRIORITY JOURNAL; RESERVOIR; RNA GENE; RNA SEQUENCE; SEQUENCE ANALYSIS; TICK; UNINDEXED SEQUENCE; UZBEKISTAN; VIRUS STRAIN;

DISEASE OUTBREAKS; EPIDEMIOLOGY, MOLECULAR; GENOME, VIRAL; GENOTYPE; HEMORRHAGIC FEVER VIRUS, CRIMEAN-CONGO; HEMORRHAGIC FEVER, CRIMEAN; HUMANS; IRAQ; MOLECULAR SEQUENCE DATA; PAKISTAN; PHYLOGENY; RNA, VIRAL; SEQUENCE ANALYSIS, RNA; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; UZBEKISTAN;

ACARI; ANIMALIA; AVES; BUNYAVIRIDAE; CRIMEAN-CONGO HEMORRHAGIC FEVER VIRUS; NAIROVIRUS;

EID: 11144355453     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2003.12.035     Document Type: Conference Paper

References (16)

1. Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:1997;3389-3402.
2. Bishop, D.H.L., 1996. Biology and molecular biology of Bunyaviruses, in: Elliott, R.M. (Ed.), The Bunyaviridae. Plenum Press, New York, pp. 19-61.
3. Calisher, C.H., 1996. History, classification and taxonomy of viruses in the family Bunyaviridae. In: Elliott, R.M. (Ed.), The Bunyaviridae. Plenum Press, New York, pp. 1-17.
4. Chumakov M.P., Butenko A.M., Shalunova N.V., Martianova L.I., Smirnova S.E., Bashkirtsev I.N., Zavodova T.I., Rubin S.G., Tkachenko E.A., Karmysheva V.I., Reingol'd V.N., Popov G.V., Savinov A.P. New data on the viral agent of Crimean hemorrhagic fever. Vopr. Virusol. 13:1968;377.
5. Drosten C., Minnak D., Emmerich P., Schmitz H., Reinicke T. Crimean-Congo hemorrhagic fever in Kosovo. J. Clin. Microbiol. 40:2002;1122-1123.
6. Gonzalez-Scarano, F., Nathanson, N., 1996. Bunyaviridae. In: Fields, B., Knipe, D., Howley, P. (Eds.), Fields Virology. Lippincott-Raven, Philadelphia, pp. 1473-1504.
7. Hoogstraal H. The epidemiology of tick-borne Crimean-Congo haemorrhagic fever in Asia, Europe and Africa. J. Med. Entomol. 15:1979;307-312.
8. Page R.D.M. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:1996;357-358.
9. Papa A., Bino S., Llagami A., Brahimaj B., Papadimitriou E., Pavlidou V., Velo E., Cahani G., Hajdini M., Pilaca A., Harxhi A., Antoniadis A. Crimean-Congo hemorrhagic fever in Albania, 2001. Eur. J. Clin. Microbiol. Infect. Dis. 21:2001;603-606.
10. Rodriguez L.L., Maupin G.O., Ksiazek T.G., Rollin P.E., Khan A.S., Schwarz T.F., Lofts R.S., Smith J.F., Noor A.M., Peters C.J., Nichol S.T. Molecular investigation of a multisource outbreak of Crimean-Congo hemorrhagic fever in the United Arab Emirates. Am. J. Trop. Med. Hyg. 57:1997;512-518.
11. Schmidt H.A., Strimmer K., Vingron M., Von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics. 18:2002;502-504.
12. Shepherd A.J., Swanepoel R., Shepherd S.P., Leman P.A., Blackburn N.K., Hallett A.F. A nosocomial outbreak of Crimean-Congo haemorrhagic fever at Tygerberg hospital. Part 5. Virological and serological observations. S. Afr. Med. J. 68:1985;733-736.
13. Strimmer K., Von Haeseler A. Likelihood mapping: a single method to visualize phylogenetic content of a sequence alignment. Proc. Natl. Acad. Sci. U.S.A. 94:1997;6815-6819.
14. Swanepoel R., Shepherd A.J., Leman P.A., Shepherd S.P., McGillivray G.M., Erasmus M.J., Searle L.A., Gill D.E. Epidemiological and clinical features of Crimean-Congo haemorrhagic fever in southern Africa. Am. Trop. Med. Hyg. 36:1987;120-132.
15. Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680.
16. Yashina L., Vyshemirskii O., Seregin S., Petrova I., Samokhvalov E., Lvov D., Gutorov V., Kuzina I., Tyunnikov G., Tang Y.W., Netesov S., Petrov V. Genetic analysis of Crimean-Congo hemorrhagic fever virus in Russia. J. Clin. Microbiol. 41:2003;860-862.