One-to-one quantum dot-labeled single long DNA probes

Biomaterials

Volumn 32, Issue 23, 2011, Pages 5471-5477

  He, Shibin ^a   Huang, Bi Hai ^a   Tan, Junjun ^a   Luo, Qing Ying ^a   Lin, Yi ^a   Li, Jun ^a   Hu, Yong ^a   Zhang, Lu ^a   Yan, Shihan ^a   Zhang, Qi ^a   Pang, Dai Wen ^a   Li, Lijia ^a  

^a WUHAN UNIVERSITY   (China)

Author keywords

DNA; In situ hybridization; Nanoparticle; PCR (polymerase chain reaction)

Indexed keywords

BIOLOGICAL RESEARCH; DNA FRAGMENT; DNA PROBE; DNA STRANDS; FLUORESCENCE IN SITU HYBRIDIZATION; FLUORESCENCE PROPERTIES; GEL ELECTROPHORESIS; IN SITU HYBRIDIZATION; MEDICAL DIAGNOSIS; NANOMATERIAL; PCR (POLYMERASE CHAIN REACTION); PCR PRODUCTS; QUANTITATIVE DETECTION; QUANTUM DOTS; RESEARCH GOALS; SINGLE QD; SINGLE-COPY GENES; SINGLE-MOLECULE IMAGING;

ATOMIC FORCE MICROSCOPY; BIOLOGICAL MATERIALS; DIAGNOSIS; DNA; ELECTROPHORESIS; FLUORESCENCE; FLUORESCENCE MICROSCOPY; GENES; MEDICAL IMAGING; MEDICAL NANOTECHNOLOGY; MOLECULAR BIOLOGY; OLIGONUCLEOTIDES; POLYMERIZATION; PROBES; SEMICONDUCTOR QUANTUM DOTS;

POLYMERASE CHAIN REACTION;

DNA; NANOPARTICLE; QUANTUM DOT;

ABSORPTION SPECTROSCOPY; ARTICLE; ATOMIC FORCE MICROSCOPY; DNA PROBE; DNA STRAND; FLUORESCENCE SPECTROSCOPY; GEL ELECTROPHORESIS; HYDRODYNAMICS; IN SITU HYBRIDIZATION; MAIZE; MOLECULE; NANOBIOTECHNOLOGY; NANOTECHNOLOGY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; TRANSMISSION ELECTRON MICROSCOPY;

ACRYLIC RESINS; ALDEHYDE OXIDOREDUCTASES; AMINES; CADMIUM COMPOUNDS; CHROMOSOMES, PLANT; DNA PROBES; ELECTROPHORESIS, AGAR GEL; IN SITU HYBRIDIZATION, FLUORESCENCE; LIGHT; MICROSCOPY, ATOMIC FORCE; MICROSCOPY, ELECTRON, TRANSMISSION; OLIGONUCLEOTIDES; PARTICLE SIZE; POLYMERASE CHAIN REACTION; QUANTUM DOTS; SCATTERING, RADIATION; SELENIUM COMPOUNDS; SPECTROMETRY, FLUORESCENCE; STAINING AND LABELING; SULFIDES; TEMPERATURE; ZEA MAYS; ZINC COMPOUNDS;

ZEA MAYS;

EID: 79956294172     PISSN: 01429612     EISSN: 18785905     Source Type: Journal    
DOI: 10.1016/j.biomaterials.2011.04.013     Document Type: Article

References (31)

1. Michalet X., Pinaud F.F., Bentolila L.A., Tsay J.M., Doose S., Li J.J., et al. Quantum dots for live cells, in vivo imaging, and diagnostics. Science 2005, 307:538-544.
2. Medintz I.L., Uyeda H.T., Goldman E.R., Mattoussi H. Quantum dot bioconjugates for imaging, labelling and sensing. Nat Mater 2005, 4:435-446.
3. Smith A.M., Nie S.M. Next-generation quantum dots. Nat Biotechnol 2009, 27:732-733.
4. Jamieson T., Bakhshi R., Petrova D., Pocock R., Imani M., Seifalian A.M. Biological applications of quantum dots. Biomaterials 2007, 28:4717-4732.
5. Ma L., He S., Huang J., Cao L., Yang F., Li L. Maximizing specificity and yield of PCR by the quantum dot itself rather than property of the quantum dot surface. Biochimie 2009, 91:969-973.
6. Aldaye F.A., Palmer A.L., Sleiman H.F. Assembling materials with DNA as the guide. Science 2008, 321:1795-1799.
7. Carstairs H.M.J., Lymperopoulos K., Kapanidis A.N., Bath J., Turberfield A.J. DNA monofunctionalization of quantum dots. Chembiochem 2009, 10:1781-1783.
8. Boeneman K., Deschamps J.R., Buckhout-White S., Prasuhn D.E., Blanco-Canosa J.B., Dawson P.E., et al. Quantum dot DNA bioconjugates: attachment chemistry strongly influences the resulting composite architecture. ACS Nano 2010, 4:7253-7266.
9. Zanchet D., Micheel C.M., Parak W.J., Gerion D., Alivisatos A.P. Electrophoretic isolation of discrete Au nanocrystal/DNA conjugates. Nano Lett 2001, 1:32-35.
10. Fu A., Micheel C.M., Cha J., Chang H., Yang H., Alivisatos A.P. Discrete nanostructures of quantum dots/Au with DNA. J Am Chem Soc 2004, 126:10832-10833.
11. Arnheim N., Erlich H. Polymerase chain reaction strategy. Annu Rev Biochem 1992, 61:131-156.
12. Adessi C., Matton G., Ayala G., Turcatti G., Mermod J.J., Mayer P., et al. Solid phase DNA amplification: characterisation of primer attachment and amplification mechanisms. Nucleic Acids Res 2000, 28:e87.
13. Chen W., Bian A., Agarwal A., Liu L., Shen H., Wang L., et al. Nanoparticle superstructures made by polymerase chain reaction: collective interactions of nanoparticles and a new principle for chiral materials. Nano Lett 2009, 9:2153-2159.
14. Nicewarner Pena S.R., Raina S., Goodrich G.P., Fedoroff N.V., Keating C.D. Hybridization and enzymatic extension of au nanoparticle-bound oligonucleotides. J Am Chem Soc 2002, 124:7314-7323.
15. Qin W.J., Yung L.Y. Nanoparticle-DNA conjugates bearing a specific number of short DNA strands by enzymatic manipulation of nanoparticle-bound DNA. Langmuir 2005, 21:11330-11334.
16. Patolsky F., Gill R., Weizmann Y., Mokari T., Banin U., Willner I. Lighting-up the dynamics of telomerization and DNA replication by CdSe-ZnS quantum dots. J Am Chem Soc 2003, 125:13918-13919.
17. Xiao Y., Barker P.E. Semiconductor nanocrystal probes for human metaphase chromosomes. Nucleic Acids Res 2004, 32:e28.
18. Pinaud F., Michalet X., Bentolila L.A., Tsay J.M., Doose S., Li J.J., et al. Advances in fluorescence imaging with quantum dot bio-probes. Biomaterials 2006, 27:1679-1687.
19. Chen C., Peng J., Xia H.S., Yang G.F., Wu Q.S., Chen L.D., et al. Quantum dots-based immunofluorescence technology for the quantitative determination of HER2 expression in breast cancer. Biomaterials 2009, 30:2912-2918.
20. Wang Z., Lu M., Wang X., Yin R., Song Y., Le X.C., et al. Quantum dots enhanced ultrasensitive detection of DNA adducts. Anal Chem 2009, 81:10285-10289.
21. Jiang J., Gill B.S. Current status and the future of fluorescence in situ hybridization (FISH) in plant genome research. Genome 2006, 49:1057-1068.
22. Xie H.Y., Liang J.G., Liu Y., Zhang Z.L., Pang D.W., He Z.K., et al. Preparation and characterization of overcoated II-VI quantum dots. J Nanosci Nanotechnol 2005, 5:880-886.
23. Zhou M., Nakatani E., Gronenberg L.S., Tokimoto T., Wirth M.J., Hruby V.J., et al. Peptide-labeled quantum dots for imaging GPCRs in whole cells and as single molecules. Bioconjug Chem 2007, 18:323-332.
24. Choi Y., Kim H.P., Hong S.M., Ryu J.Y., Han S.J., Song R. In situ visualization of gene expression using polymer-coated quantum-dot-DNA conjugates. Small 2009, 5:2085-2091.
25. Ma L., Wu S.M., Huang J., Ding Y., Pang D.W., Li L. Fluorescence in situ hybridization (FISH) on maize metaphase chromosomes with quantum dot-labeled DNA conjugates. Chromosoma 2008, 117:181-187.
26. Porebski S., Bailey L.G., Baum B.R. Modification of a CTAB DNA extraction protocol for plants containing high polysaccharide and polyphenol components. Plant Mol Biol Rep 1997, 15:8-15.
27. He S., Huang M., Huang J., Li J., Hu Y., Zhang L., et al. Dynamics of the Evolution of the Genus of Agrostis revealed by GISH/FISH. Crop Sci 2009, 49:2285-2290.
28. Huang J., Ma L., Yang F., Fei S.Z., Li L. 45S rDNA Regions are chromosome Fragile Sites Expressed as Gaps in vitro on metaphase chromosomes of Root-Tip Meristematic cells in Lolium spp. PLoS One 2008, 3:e2167.
29. Pellegrino T., Manna L., Kudera S., Liedl T., Koktysh D., Rogach A.L., et al. Hydrophobic nanocrystals coated with an amphiphilic polymer shell: a general Route to water soluble nanocrystals. Nano Lett 2004, 4:703-707.
30. Lamb J.C., Danilova T., Bauer M.J., Meyer J.M., Holland J.J., Jensen M.D., et al. Single-gene detection and karyotyping using small-target fluorescence in situ hybridization on maize somatic chromosomes. Genetics 2007, 175:1047-1058.
31. Howarth M., Liu W., Puthenveetil S., Zheng Y., Marshall L.F., Schmidt M.M., et al. Monovalent, reduced-size quantum dots for imaging receptors on living cells. Nat Methods 2008, 5:397-399.