-
2
-
-
34548388925
-
Inference of gene networks from temporal gene expression profiles
-
DOI 10.1049/iet-syb:20060079
-
M. Bansal, and D. di Bernardo Inference of gene networks from temporal gene expression profiles IET Systems Biology 1 5 2007 306 312 (Pubitemid 47354629)
-
(2007)
IET Systems Biology
, vol.1
, Issue.5
, pp. 306-312
-
-
Bansal, M.1
Di Bernardo, D.2
-
3
-
-
16844376909
-
Reverse engineering of regulatory networks in human B cells
-
K. Basso, A. Margolin, G. Stolovitzky, U. Klein, R. Dalla-Favera, and A. Califano Reverse engineering of regulatory networks in human B cells Nature Genetics 37 4 2005 382 390
-
(2005)
Nature Genetics
, vol.37
, Issue.4
, pp. 382-390
-
-
Basso, K.1
Margolin, A.2
Stolovitzky, G.3
Klein, U.4
Dalla-Favera, R.5
Califano, A.6
-
4
-
-
33747813561
-
The inferelator: An algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo
-
R. Bonneau, D. Reiss, P. Shannon, M. Facciotti, L. Hood, N. Baliga, and V. Thorsson The inferelator: an algorithm for learning parsimonious regulatory networks from systems-biology data sets de novo Genome Biology 7 2006 R36
-
(2006)
Genome Biology
, vol.7
, pp. 36
-
-
Bonneau, R.1
Reiss, D.2
Shannon, P.3
Facciotti, M.4
Hood, L.5
Baliga, N.6
Thorsson, V.7
-
6
-
-
0033655775
-
Mutual information relevance networks: Functional genomic clustering using pairwise entropy measurements
-
Butte, A.; Kohane, I. (2000). Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements. In Pac. symp. biocomput. pp. 418429.
-
(2000)
. Symp. Biocomput
, pp. 418-429
-
-
Butte, A.1
Kohane, I.2
-
7
-
-
63049128934
-
A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches
-
I. Cantone, L. Marucci, F. Iorio, M. Rucci, V. Belcastro, M. Bansal, S. Santini, M. Bernardo, D. Bernardo, and M. Cosma A yeast synthetic network for in vivo assessment of reverse-engineering and modeling approaches Cell 137 2009 172 181
-
(2009)
Cell
, vol.137
, pp. 172-181
-
-
Cantone, I.1
Marucci, L.2
Iorio, F.3
Rucci, M.4
Belcastro, V.5
Bansal, M.6
Santini, S.7
Bernardo, M.8
Bernardo, D.9
Cosma, M.10
-
8
-
-
77957110013
-
Advantages and limitations of current network inference methods
-
R. De Smet, and K. Marchal Advantages and limitations of current network inference methods Nature Reviews Microbiology 8 2010
-
(2010)
Nature Reviews Microbiology
, vol.8
-
-
De Smet, R.1
Marchal, K.2
-
9
-
-
21444452397
-
Chemogenomic profiling on a genome-wide scale using reverse-engineering gene networks
-
D. di Bernardo, M. Thompson, T. Gardner, S. Chobot, E. Eastwood, A. Wojtovich, S. Elliott, S. Schaus, and J. Collins Chemogenomic profiling on a genome-wide scale using reverse-engineering gene networks Nature Biotechnology 23 3 2005
-
(2005)
Nature Biotechnology
, vol.23
, Issue.3
-
-
Di Bernardo, D.1
Thompson, M.2
Gardner, T.3
Chobot, S.4
Eastwood, E.5
Wojtovich, A.6
Elliott, S.7
Schaus, S.8
Collins, J.9
-
10
-
-
33746353952
-
Applying dynamic Bayesian networks to perturbed gene expression data
-
N. Dojer, A. Gambin, A. Mizera, B. Wilczynski, and J. Tiuryn Applying dynamic Bayesian networks to perturbed gene expression data BMC Bioinformatics 7 2006
-
(2006)
BMC Bioinformatics
, vol.7
-
-
Dojer, N.1
Gambin, A.2
Mizera, A.3
Wilczynski, B.4
Tiuryn, J.5
-
11
-
-
33846400424
-
Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles
-
J. Faith, B. Hayete, J. Thaden, I. Mogno, J. Wierzbowski, G. Cottarel, S. Kasif, J. Collins, and T. Gardner Large-scale mapping and validation of Escherichia coli transcriptional regulation from a compendium of expression profiles PLoS Biology 5 1 2007
-
(2007)
PLoS Biology
, vol.5
, Issue.1
-
-
Faith, J.1
Hayete, B.2
Thaden, J.3
Mogno, I.4
Wierzbowski, J.5
Cottarel, G.6
Kasif, S.7
Collins, J.8
Gardner, T.9
-
12
-
-
0038048325
-
Inferring genetic networks and identifying compound mode of action via expression profiling
-
T. Gardner, D. Bernardo, D. Lorenz, and J. Colins Inferring genetic networks and identifying compound mode of action via expression profiling Science 301 2003
-
(2003)
Science
, vol.301
-
-
Gardner, T.1
Bernardo, D.2
Lorenz, D.3
Colins, J.4
-
13
-
-
52249116064
-
Necessary and sufficient conditions for dynamical structure reconstruction of LTI networks
-
J. Gonalves, and S. Warnick Necessary and sufficient conditions for dynamical structure reconstruction of LTI networks IEEE Transactions on Automatic Control 53 2008
-
(2008)
IEEE Transactions on Automatic Control
, vol.53
-
-
Gonalves, J.1
Warnick, S.2
-
16
-
-
0016355478
-
A new look at the statistical model identification
-
A. Hirotugu A new look at the statistical model identification IEEE Transactions on Automatic Control 19 6 1974 716 723
-
(1974)
IEEE Transactions on Automatic Control
, vol.19
, Issue.6
, pp. 716-723
-
-
Hirotugu, A.1
-
17
-
-
79952196617
-
Algorithmic and analytical methods in network biology
-
M. Koyuturk Algorithmic and analytical methods in network biology WIREs Systems Biology and Medicine 2 3 2010 277 292
-
(2010)
WIREs Systems Biology and Medicine
, vol.2
, Issue.3
, pp. 277-292
-
-
Koyuturk, M.1
-
19
-
-
70349548793
-
Interampattenessa generic property of biochemical networks
-
T. Nordling, and E. Jacobsen Interampattenessa generic property of biochemical networks IET Systems Biology 2009
-
(2009)
IET Systems Biology
-
-
Nordling, T.1
Jacobsen, E.2
-
20
-
-
71049191527
-
A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides
-
M. Roberts, E. August, A. Hamadeh, P. Maini, P. McSharry, J. Armitage, and A. Papachristodoulou A model invalidation-based approach for elucidating biological signalling pathways, applied to the chemotaxis pathway in R. sphaeroides BMC Systems Biology 3 105 2009
-
(2009)
BMC Systems Biology
, vol.3
, Issue.105
-
-
Roberts, M.1
August, E.2
Hamadeh, A.3
Maini, P.4
McSharry, P.5
Armitage, J.6
Papachristodoulou, A.7
-
21
-
-
58149234398
-
Network reconstruction based on steady-state data
-
E. Sontag Network reconstruction based on steady-state data Essays in Biochemistry 45 2008 161 176
-
(2008)
Essays in Biochemistry
, vol.45
, pp. 161-176
-
-
Sontag, E.1
-
22
-
-
10044252242
-
Making sense of it all: Bacterial chemotaxis
-
DOI 10.1038/nrm1524
-
G. Wadhams, and J. Armitage Making sense of it all: bacterial chemotaxis Nature Reviews Molecular Cell Biology 5 2004 1024 1037 (Pubitemid 39611538)
-
(2004)
Nature Reviews Molecular Cell Biology
, vol.5
, Issue.12
, pp. 1024-1037
-
-
Wadhams, G.H.1
Armitage, J.P.2
-
24
-
-
12344259602
-
Advances to Bayesian network inference for generating causal networks from observational biological data
-
DOI 10.1093/bioinformatics/bth448
-
J. Yu, V. Smith, P. Wang, A. Hartemink, and E. Jarvis Advances to Bayesian network inference for generating causal networks from observational biological data Bioinformatics 20 18 2004 3594 3603 (Pubitemid 40136795)
-
(2004)
Bioinformatics
, vol.20
, Issue.18
, pp. 3594-3603
-
-
Yu, J.1
Smith, V.A.2
Wang, P.P.3
Hartemink, A.J.4
Jarvis, E.D.5
|