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Volumn 36, Issue 1, 2011, Pages 163-170

Phylogenetic relationships of Solanum series Conicibaccata and related species in Solanum section Petota inferred from five conserved ortholog sequences

Author keywords

Conserved orthologous sequences; COSII; Solanum section Petota; Solanum series Conicibaccata; Wild potatoes

Indexed keywords

SOLANUM; SOLANUM JAMESII; SOLANUM TUBEROSUM;

EID: 79956135153     PISSN: 03636445     EISSN: 15482324     Source Type: Journal    
DOI: 10.1600/036364411X553252     Document Type: Article
Times cited : (12)

References (37)
  • 1
    • 77956197785 scopus 로고    scopus 로고
    • Phylogeny of Solanum series Piurana and related species in Solanum section Petota based on five conserved ortholog sequences
    • 4-page foldout
    • Ames, M. and D. M. Spooner. 2010. Phylogeny of Solanum series Piurana and related species in Solanum section Petota based on five conserved ortholog sequences. Taxon 59: 1091-1101 + 4-page foldout.
    • (2010) Taxon , vol.59 , pp. 1091-1101
    • Ames, M.1    Spooner, D.M.2
  • 2
    • 0030837767 scopus 로고    scopus 로고
    • Phylogenetic relationships of wild potatoes, Solanum series Conicibaccata (Sect. Petota)
    • Castillo, R. and D. M. Spooner. 1997. Phylogenetic relationships of wild potatoes, Solanum series Conicibaccata (sect. Petota ). Systematic Botany 22: 45-83. (Pubitemid 27354265)
    • (1997) Systematic Botany , vol.22 , Issue.1 , pp. 45-83
    • Castillo, R.O.1    Spooner, D.M.2
  • 3
    • 41849101083 scopus 로고    scopus 로고
    • A morphometric study of species boundaries of the wild potato Solanum series Conicibaccata: A replicated field trial in Andean Peru
    • DOI 10.1600/036364408783887519
    • Fajardo, D., R. Castillo, A. Salas, and D. M. Spooner. 2008. A morphometric study of species boundaries of the wild potato Solanum series Conicibaccata: a replicated field trial in Andean Peru. Systematic Botany 33: 183-192. (Pubitemid 351500252)
    • (2008) Systematic Botany , vol.33 , Issue.1 , pp. 183-192
    • Fajardo, D.1    Castillo, R.2    Salas, A.3    Spooner, D.M.4
  • 4
    • 84959743928 scopus 로고
    • Methods for computing Wagner trees
    • Farris, J. 1970. Methods for computing Wagner trees. Systematic Zoology 19: 83-92.
    • (1970) Systematic Zoology , vol.19 , pp. 83-92
    • Farris, J.1
  • 5
    • 0000461280 scopus 로고
    • Confidence limits on phylogenies: An approach using the bootstrap
    • Felsenstein, J. 1985. Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39: 783-791.
    • (1985) Evolution , vol.39 , pp. 783-791
    • Felsenstein, J.1
  • 6
    • 84959747425 scopus 로고
    • Toward defining the course of evolution: Minimum change for a specific tree topology
    • Fitch, W. 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Systematic Zoology 20: 406-416.
    • (1971) Systematic Zoology , vol.20 , pp. 406-416
    • Fitch, W.1
  • 8
    • 0027139978 scopus 로고
    • Assignment of endosperm balance numbers to the tuber-bearing solanums and their close non-tuber-bearing relatives
    • Hanneman, R. E. Jr. 1994. Assignment of endosperm balance numbers to the tuber-bearing solanums and their close non-tuber-bearing relatives. Euphytica 74: 19-25.
    • (1994) Euphytica , vol.74 , pp. 19-25
    • Hanneman Jr., R.E.1
  • 10
    • 34250334614 scopus 로고    scopus 로고
    • Geographical and environmental range expansion through polyploidy in wild potatoes (Solanum section Petota)
    • DOI 10.1111/j.1466-8238.2007.00308.x
    • Hijmans, R., T. Gavrilenko, S. Stephenson, J. Bamberg, A. Salas, and D. M. Spooner. 2007. Geographic and environmental range expansion through polyploidy in wild potatoes ( Solanum section Petota ). Global Ecology and Biogeography 16: 485-495. (Pubitemid 46923548)
    • (2007) Global Ecology and Biogeography , vol.16 , Issue.4 , pp. 485-495
    • Hijmans, R.J.1    Gavrilenko, T.2    Stephenson, S.3    Bamberg, J.4    Salas, A.5    Spooner, D.M.6
  • 12
    • 43349089977 scopus 로고    scopus 로고
    • The use and limits of AFLP data in the taxonomy of polyploid wild potato species in Solanum series Conicibaccata
    • DOI 10.1007/s10592-007-9350-y
    • Jiménez, J. P., A. Brenes, D. Fajardo, A. Salas, and D. M. Spooner. 2008. The use and limits of AFLP data in the taxonomy of polyploid wild potato species in Solanum series Conicibaccata. Conservation Genetics 9: 381-387. (Pubitemid 351660114)
    • (2008) Conservation Genetics , vol.9 , Issue.2 , pp. 381-387
    • Jimenez, J.P.1    Brenes, A.2    Fajardo, D.3    Salas, A.4    Spooner, D.M.5
  • 13
    • 17044416291 scopus 로고    scopus 로고
    • Reconstructing patterns of reticulate evolution in plants
    • Linder, C. R. and L. H. Rieseberg. 2004. Reconstructing patterns of reticulate evolution in plants. American Journal of Botany 91: 1700-1708. (Pubitemid 43193727)
    • (2004) American Journal of Botany , vol.91 , Issue.10 , pp. 1700-1708
    • Linder, C.R.1    Rieseberg, L.H.2
  • 15
    • 22944482184 scopus 로고    scopus 로고
    • SeqState: Primer design and sequence statistics for phylogenetic DNA datasets
    • DOI 10.2165/00822942-200504010-00008
    • Müller, K. 2005. SeqState-primer design and sequence statistics for phylogenetic DNA data sets. Applied Bioinformatics 4: 65-69. (Pubitemid 41043903)
    • (2005) Applied Bioinformatics , vol.4 , Issue.1 , pp. 65-69
    • Muller, K.1
  • 16
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • Posada, D. and K. Crandall. 1998. Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818. (Pubitemid 28552116)
    • (1998) Bioinformatics , vol.14 , Issue.9 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 19
    • 69549118850 scopus 로고    scopus 로고
    • Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history?
    • doi: 10.1186/1471-2148-9-191
    • Rodríguez, F., F. Wu, C. Ané, S. Tanksley, and D. M. Spooner. 2009. Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history? BMC Evolutionary Biology 9: 191, doi: 10.1186/1471-2148-9-191.
    • (2009) BMC Evolutionary Biology , vol.9 , pp. 191
    • Rodríguez, F.1    Wu, F.2    Ané, C.3    Tanksley, S.4    Spooner, D.M.5
  • 20
    • 0036062110 scopus 로고    scopus 로고
    • Utility of low-copy nuclear gene sequences in plant phylogenetics
    • DOI 10.1080/10409230290771474
    • Sang, T. 2002. Utility of low-copy nuclear gene sequences in plant phylogenetics. Critical Reviews in Biochemistry and Molecular Biology 37: 121-147. (Pubitemid 34779349)
    • (2002) Critical Reviews in Biochemistry and Molecular Biology , vol.37 , Issue.3 , pp. 121-147
    • Sang, T.1
  • 21
    • 0034350427 scopus 로고    scopus 로고
    • Gaps as characters in sequencebased phylogenetic analyses
    • Simmons, M. and H. Ochoterena. 2000. Gaps as characters in sequencebased phylogenetic analyses. Systematic Biology 49: 369-381.
    • (2000) Systematic Biology , vol.49 , pp. 369-381
    • Simmons, M.1    Ochoterena, H.2
  • 22
  • 23
    • 67650114617 scopus 로고    scopus 로고
    • DNA barcoding will frequently fail in complicated groups: An example in wild potatoes
    • Spooner, D. M. 2009. DNA barcoding will frequently fail in complicated groups: an example in wild potatoes. American Journal of Botany 96: 1177-1189.
    • (2009) American Journal of Botany , vol.96 , pp. 1177-1189
    • Spooner, D.M.1
  • 24
    • 77956223835 scopus 로고    scopus 로고
    • Petota (wild and cultivated potatoes) are drastically altered as a result of PBI-funded research.Botany and Mycology 2009 Meeting Abstracts
    • Spooner, D. M., M. Ames, D. Fajardo, and F. Rodríguez. 2009. Species boundaries and interrelationships of Solanum sect. Petota (wild and cultivated potatoes) are drastically altered as a result of PBI-funded research.Botany and Mycology 2009 Meeting Abstracts http://2009. botanyconference.org/engine/search/index.php?func=detail&aid=24.
    • (2009) Species Boundaries and Interrelationships of Solanum Sect
    • Spooner, D.M.1    Ames, M.2    Fajardo, D.3    Rodríguez, F.4
  • 27
    • 0027020639 scopus 로고
    • Species limits and hypotheses of hybridization of Solanum berthaultii Hawkes and S. tarijense Hawkes: Morphological data
    • Spooner, D. and R. G. van den Berg. 1992. Species limits and hypotheses of hybridization of Solanum berthaultii Hawkes and S. tarijense Hawkes: morphological data. Taxon 41: 685-700. (Pubitemid 24406636)
    • (1992) Taxon , vol.41 , Issue.4 , pp. 685-700
    • Spooner, D.M.1    Van Den Berg, R.G.2
  • 28
    • 0001284099 scopus 로고
    • Chloroplast DNA evidence for the interrelationships of tomatoes, potatoes, and pepinos (Solanaceae)
    • Spooner, D., G. J. Anderson, and R. K. Jansen. 1993. Chloroplast DNA evidence for the interrelationships of tomatoes, potatoes, and pepinos (Solanaceae). American Journal of Botany 80: 676-688.
    • (1993) American Journal of Botany , vol.80 , pp. 676-688
    • Spooner, D.1    Anderson, G.J.2    Jansen, R.K.3
  • 30
    • 42449158444 scopus 로고    scopus 로고
    • Genomic origins of potato polyploids: GBSSI gene sequencing data
    • DOI 10.2135/cropsci2007.09.0504tpg
    • Spooner, D., F. Rodríguez, Z. Polgar, H. E. Ballard Jr., and S. H. Jansky. 2008. Genomic origins of potato polyploids: GBSSI gene sequencing data. The Plant Genome, a supplement to Crop Science 48: S27-S36. (Pubitemid 351569250)
    • (2008) Crop Science , vol.48 , Issue.SUPPL. 1
    • Spooner, D.M.1    Rodriguez, F.2    Polgar, Z.3    Ballard Jr., H.E.4    Jansky, S.H.5
  • 32
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML web-servers
    • Stamatakis, A., P. Hoover, and J. Rougemont. 2008. A rapid bootstrap algorithm for the RAxML web-servers. Systematic Biology 75: 758-771.
    • (2008) Systematic Biology , vol.75 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 34
    • 77950960966 scopus 로고    scopus 로고
    • Dynamics of polyploid formation in Tragopogon (Asteraceae): Recurrent formation, gene flow, and population structure
    • Symonds, V. V., P. S. Soltis, and D. E. Soltis. 2010. Dynamics of polyploid formation in Tragopogon (Asteraceae): recurrent formation, gene flow, and population structure. Evolution 64: 1984-2003.
    • (2010) Evolution , vol.64 , pp. 1984-2003
    • Symonds, V.V.1    Soltis, P.S.2    Soltis, D.E.3
  • 35
    • 0021084212 scopus 로고
    • Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
    • Templeton, A. R. 1983. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37: 221-244. (Pubitemid 14275150)
    • (1983) Evolution , vol.37 , Issue.2 , pp. 221-244
    • Templeton, A.R.1
  • 36
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • DOI 10.1093/nar/25.24.4876
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 5: 4876-4882. (Pubitemid 28022245)
    • (1997) Nucleic Acids Research , vol.25 , Issue.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 37
    • 0000162362 scopus 로고    scopus 로고
    • Phylogenetic incongruence: Window into genome history and molecular evolution
    • ed. D. Soltis, P. Soltis and J. Doyle. New York: Springer-Verlag
    • Wendel, J. F. and J. J. Doyle. 1998. Phylogenetic incongruence: window into genome history and molecular evolution. Pp. 265-296 in Molecular Systematics of Plants II. ed. D. Soltis, P. Soltis and J. Doyle. New York: Springer-Verlag.
    • (1998) Molecular Systematics of Plants II , pp. 265-296
    • Wendel, J.F.1    Doyle, J.J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.