Unraveling the phylogeny of Heptacodium and Zabelia (Caprifoliaceae): An interdisciplinary approach

Systematic Botany

Volumn 36, Issue 1, 2011, Pages 231-252

  Jacobs, Bart ^a   Geuten, Koen ^a   Pyck, Nancy ^b   Huysmans, Suzy ^a   Jansen, Steven ^c,e   Smets, Erik ^a,d  

^a UNIVERSITY OF LEUVEN   (Belgium)

^b SCIENTIFIC INSTITUTE OF PUBLIC HEALTH   (Belgium)

^c JODRELL LABORATORY   (United Kingdom)

^d UNIVERSITEIT LEIDEN BRANCH   (Netherlands)

^e UNIVERSITY OF ULM   (Germany)

Author keywords

Abelia; Dipsacales; Linnaea clade s. l.; Lonicera clade; Morphology; Phylogeny

Indexed keywords

ABELIA; CAPRIFOLIACEAE; DIPSACALES; HEPTACODIUM; LONICERA; MORINA;

EID: 79956125733     PISSN: 03636445     EISSN: 15482324     Source Type: Journal    
DOI: 10.1600/036364411X553306     Document Type: Article

References (78)

1. Akaike, H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716-723.
2. Airy Shaw, H. K. 1952. A second species of the genus Heptacodium Rehd. (Caprifoliaceae). Kew Bulletin 7: 245-246.
3. Backlund, A. 1996. Phylogeny of the order Dipsacales. Ph. D. Dissertation. Uppsala: Uppsala University.
4. Backlund, A. and N. Pyck. 1998. Diervillaceae and Linnaeaceae, two new families of caprifolioids. Taxon 47: 657-661. (Pubitemid 28395395)
5. Bell, C. D. 2004. Preliminary phylogeny of Valerianaceae (Dipsacales) inferred from nuclear and chloroplast DNA sequence data. Molecular Phylogenetics and Evolution 31: 340-350. (Pubitemid 38403341)
6. Bell, C. D. 2007. Phylogenetic placement and biogeography of the North American species of Valerianella (Valerianaceae: Dipsacales) based on chloroplast and nuclear DNA. Molecular Phylogenetics and Evolution 44: 929-941. (Pubitemid 47259710)
7. Bell, C. D. and M. J. Donoghue. 2003. Phylogeny and biogeography of Morinaceae (Dipsacales) based on nuclear and chloroplast DNA sequences. Organisms, Diversity & Evolution 3: 227-237. (Pubitemid 37171960)
8. Bell, C. D. and M. J. Donoghue. 2005. Dating the Dipsacales: comparing models, genes, and evolutionary implications. American Journal of Botany 92: 284-296. (Pubitemid 40210819)
9. Blackmore, S. and M. J. Cannon. 1983. Palynology and systematics of Morinaceae. Review of Palaeobotany and Palynology 40: 207-226.
10. Böhnke-Gütlein, E. and F. Weberling. 1981. Palynologische Untersuchungen an Caprifoliaceae. I. Sambuceae, Viburneae und Diervilleae. Tropische und subtropische Pflanzenwelt 34: 131-189.
11. Chia-Chi, H. and H. Chao-Xing. 1988. Pollen morphology of Caprifoliaceae from China and its taxonomic significance. Acta Phytotaxonomica Sinica 26: 343-352.
12. Donoghue, M. J., B. Baldwin, J. Li, and R. C. Winkworth. 2004. Viburnum phylogeny based on chloroplast trnK intron and nuclear ribosomal ITS DNA sequences. Systematic Botany 29: 188-198. (Pubitemid 38261470)
13. Donoghue, M. J., C. D. Bell, and R. C. Winkworth. 2003. The evolution of reproductive characters in Dipsacales. International Journal of Plant Sciences 164: S453-S464. (Pubitemid 37417958)
14. Donoghue, M. J., T. Eriksson, P. A. Reeves, and R. G. Olmstead. 2001. Phylogeny and phylogenetic taxonomy of Dipsacales, with special reference to Sinadoxa and Tetradoxa (Adoxaceae). Harvard Papers in Botany 6: 459-479.
15. Drummond, A. J., B. Ashton, M. Cheung, J. Heled, M. Kearse, R. Moir, S. Stones-Havas, T. Thierer, and A. Wilson. 2009. Geneious, v. 4.7. Auckland: Biomatters.
16. Edgar, R. C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797. (Pubitemid 38832724)
17. Erdtman, G. 1952. Pollen morphology and plant taxonomy. Angiosperms. Stockholm: Almqvist and Wiksell.
18. Eriksson, T. and M. J. Donoghue. 1997. Phylogenetic relationships of Sambucus and Adoxa (Adoxoideae, Adoxaceae) based on nuclear ribosomal ITS sequences and preliminary morphological data. Systematic Botany 22: 555-573. (Pubitemid 28111179)
19. Farris, J. S. 1989. The retention index and the rescaled consistency index. Cladistics 5: 417-419.
20. Felsenstein, J. 1973. Maximum likelihood and minimum-steps methods for estimating evolutionary trees from data on discrete characters. Systematic Zoology 22: 240-249.
21. Felsenstein, J. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
22. Felsenstein, J. 1988. Phylogenies from molecular sequences: Inference and reliability. Annual Review of Genetics 22: 521-565. (Pubitemid 19156673)
23. Gould, K. R. and M. J. Donoghue. 2000. Phylogeny and biogeography of Triosteum (Caprifoliaceae). Harvard Papers in Botany 5: 157-166.
24. Greguss, P. 1959. Holzanatomie der Europäischen LaubhöIzer und Sträucher. Budapest: Akademiae Kiadó.
25. Hara, H. 1983. A Revision of the Caprifoliaceae of Japan with reference to allied plants in other districts and the Adoxaceae. Tokyo: Academia Scientific Books.
26. Hidalgo, O., T. Garnatje, A. Susana, and J. Mathez. 2004. Phylogeny of Valerianaceae based on matK and ITS markers, with reference to matK individual polymorphisms. Annals of Botany 93: 283-293. (Pubitemid 41295621)
27. IAWA Committee. 1989. IAWA list of microscopic features for hardwood identification. International Association of Wood Anatomists Bulletin 10: 219-332.
28. Ikuse, M. and S. Kurosawa. 1954. Notes on section Zabelia Rehder of the genus Abelia. Journal of Japanese Botany 29: 107-110.
29. Jacobs, B. 2010. Fruits and seeds of Dipsacales: morphology and evolution. Ph. D. Dissertation. Leuven: Katholieke Universiteit Leuven.
30. Jacobs, B., S. Huysmans, and E. Smets. 2010. Evolution and systematic value of fruit and seed characters in Adoxaceae (Dipsacales). Taxon 59: 850-866.
31. Jacobs, B., F. Lens, and E. Smets. 2009. Evolution of fruit and seed characters in the Diervilla and Lonicera clades (Caprifoliaceae, Dipsacales). Annals of Botany 104: 253-276.
32. Jansen, S., P. Kitin, H. De Pauw, M. Idris, H. Beeckman, and E. Smets. 1998. Preparation of wood specimens for transmitted light microscopy and scanning electron microscopy. Belgian Journal of Botany 131: 41-49.
33. Jin, Z. and J. Li. 2007. Genetic differentiation in endangered Heptacodium miconioides Rehd. based on ISSR polymorphism and implications for its conservation. Forest Ecology and Management 245: 130-136.
34. Kim, Y.-D. and S.-H. Kim. 1999. Phylogeny of Weigela and Diervilla (Caprifoliaceae) based on nuclear rDNA ITS sequences: Biogeographic and taxonomic implications. Journal of Plant Research 112: 331-341. (Pubitemid 129315650)
35. Kim, T., B.-Y. Sun, C. W. Park, and Y. Suh. 1999. Phylogenetic implications of matK sequences in Caprifoliaceae. American Journal of Botany 86 (Suppl.): 3202.
36. Kluge, A. G. and J. S. Farris. 1969. Quantitative phyletics and the evolution of Anurans. Systematic Zoology 18: 1-32.
37. Maddison, W. P. and D. R. Maddison. 2002. MacClade 4: Interactive analysis of phylogeny and character evolution. Sunderland: Sinauer Associates.
38. Makino, T. 1948. Establishment of the genus Zabelia. Makinoa 9: 175.
39. Manen, J., A. Natali, and F. Ehrendorfer. 1994. Phylogeny of Rubiaceae-Rubieae inferred from the sequence of a cpDNA intergenic region. Plant Systematics and Evolution 190: 195-211. (Pubitemid 2099793)
40. Metcalfe, C. R. 1952. Notes on the anatomy of Heptacodium. Kew Bulletin 7: 247-248.
41. Moore, B. R. and M. J. Donoghue. 2007. Correlates of diversification in the plant clade Dipsacales: Geographic movement and evolutionary innovations. American Naturalist 170: S29-S55.
42. Nylander, J. A. A. 2004. Mr. Modeltest v. 2.2. Program distributed by the author. Uppsala: Uppsala University.
43. Ogata, K. 1988. Wood anatomy of Caprifoliaceae of Japan. International Association of Wood Anatomists Bulletin 9: 299-316.
44. Ogata, K. 1991. Wood anatomy of Zabelia (Caprifoliaceae): Evidence for generic recognition. International Association of Wood Anatomists Bulletin 12: 111-121.
45. Ogata, K. 1992. Some examples of contribution of wood anatomy to plant taxonomy. Pp. 242-250 in Proceedings 2nd Pacific regional wood anatomy conference, eds. J. P. Rojo, J. U. Aday, E. R. Barile, R. K. Araral, W. M. America. Laguna, Philippines.
46. Punt, W., P. P. Hoen, S. Blackmore, S. Nilsson, and A. Le Thomas. 2007. Glossary of pollen and spore terminology. Review of Palaeobotany and Palynology 143: 1-81.http://www.bio.uu.nl/ palaeo/glossary/glos-int.htm (Pubitemid 44937372)
47. Pyck, N. 2001. Phylogenetic relations within Dipsacales: a combined molecular and morphological approach. Ph. D. Dissertation. Leuven: Katholieke Universiteit Leuven.
48. Pyck, N. and E. Smets. 2000. A search for the phylogenetic position of the seven-son flower ( Heptacodium, Dipsacales): Combining molecular and morphological evidence. Plant Systematics and Evolution 225: 185-199. (Pubitemid 32097442)
49. Rambaut, A. and A. J. Drummond. 2007. Tracer v1.5, http://beast.bio.ed. ac.uk/tracer.
50. Rehder, A. 1911. Synopsis of the genus Abelia. Pp. 122-129 in Plantae Wilsonianae vol. 1, ed. C. S. Sargent. Cambridge: Cambridge University Press.
51. Rehder, A. 1916 Caprifoliaceae. Pp. 617-619 in Plantae Wilsonianae vol. 2, ed. C. S. Sargent. Cambridge: Cambridge University Press.
52. Reitsma, T. 1969. Size modifications of recent pollen grains under different treatments. Review of Palaeobotany and Palynology 69: 23-47.
53. Ronquist, F. and J. P. Huelsenbeck. 2003. Mr. Bayes v. 3.0: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574. (Pubitemid 37038874)
54. Shimodaira, H. 2002. An approximately unbiased test of phylogenetic tree selection. Systematic Biology 51: 492-508. (Pubitemid 35180700)
55. Shimodaira, H. and M. Hasegawa. 1999. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Molecular Biology and Evolution 16: 114-116.
56. Shimodaira, H. and M. Hasegawa. 2001. CONSEL: For assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247. (Pubitemid 33735360)
57. Simmons, M. P. 2004. Independence of alignment and tree search. Molecular Phylogenetics and Evolution 31: 874-879. (Pubitemid 38610960)
58. Simmons, M. P. and H. Ochoterena. 2000. Gaps as characters in sequencebased phylogenetic analysis. Systematic Biology 49: 369-381.
59. Simonovik, B., A. Ivancic, J. Jakse, and B. Bohanec. 2007. Production and genetic evaluation of interspecific hybrids within the genus Sambucus. Plant Breeding 126: 628-633. (Pubitemid 350151233)
60. Slanc, P., M. Ravnikar, and B. Strukelj. 2006. Identification of individual herbal drugs in tea mixtures using restriction analysis of ITS DNA and real-time PCR. Die Pharmazie 61: 912-915. (Pubitemid 44807263)
61. Smith, S. A. 2009. Taking into account phylogenetic and divergence-time uncertainty in a parametric biogeographical analysis of the Northern Hemisphere plant clade Caprifolieae. Journal of Biogeography 36: 2324-2337.
62. Smith, S. A. and M. J. Donoghue. 2008. Rates of molecular evolution are linked to life history in flowering plants. Science 322: 86-89.
63. Taberlet, P., L. Gielly, G. Pautou, and J. Bouvet. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109. (Pubitemid 44642609)
64. Swofford, D. L. 2002. PAUPz.ast;: Phylogenetic analysis using parsimony (z.ast;and other methods), v. 4.0 beta 10. Sunderland: Sinauer Associates.
65. Taberlet, P., L. Gielly, G. Pautou, and J. Bouvet. 1991. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17: 1105-1109.
66. Tel-Zur, N., S. Abbo, D. Myslabodski, and Y. Mizrahi. 1999. Modified CTAB procedure for DNA isolation from epiphytic cacti of the genera Hylocereus and Selenicereus (Cactaceae). Plant Molecular Biology Reporter 17: 249-254. (Pubitemid 129641131)
67. Theis, N., M. J. Donoghue, and J. Li. 2008. Phylogenetics of the Caprifolieae and Lonicera (Dipsacales) based on nuclear and chloroplast DNA sequences. Systematic Botany 33: 776-783.
68. Troll, W. and F. Weberling. 1966. Die Infloreszenzen der Caprifoliaceen und ihre systematische Bedeutung. Abhandlungen der Mathematisch- Naturwissenschaftliche Klasse 4: 455-605.
69. Verlaque, R. 1983. Contribution l'étude du genre Morina L. Pollen et Spores 25: 143-162.
70. Weberling, F. 1966. Zur systematischen Stellung der Gattung Heptacodium Rehd. Botanische Jahrbucher 85: 253-258.
71. White, T. J., T. Bruns, S. Lee, and J. Taylor. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. Pp. 315-322 in PCR protocols: A guide to methods and applications, eds. M. Innis, D. Gelfand, J. Sninsky, T. J. White. San Diego: Academic Press.
72. Winkworth, R. C., C. D. Bell, and M. J. Donoghue. 2008. Mitochondrial sequence data and Dipsacales phylogeny: Mixed models, partitioned Bayesian analyses, and model selection. Molecular Phylogenetics and Evolution 46: 830-843.
73. Yang, Z. and B. Rannala. 1997. Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo method. Molecular Biology and Evolution 14: 717-724. (Pubitemid 27287292)
74. Young, N. D., K. E. Steiner, and C. W. de Pamphilis. 1999. The evolution of parasitism in Scrophulariaceae/Orobanchaceae: Plastid gene sequence refute an evolutionary transition series. Annals of the Missouri Botanical Garden 86: 876-893. (Pubitemid 30065559)
75. Zhang, W.-H., Z.-D. Chen, J. Li, H.-B. Chen, and Y.-C. Tang. 2003. Phylogeny of the Dipsacales s. l. based on chloroplast trnL-F and ndhF sequences. Molecular Phylogenetics and Evolution 26: 176-189.
76. Zhang, Z.-Y., Z.-K. Zhou, J. Li, and Z.-J. Gu. 2002. Karyomorphology of Heptacodium (Caprifoliaceae s. s.) and its phylogenetic implications. Taxon 51: 499-505.
77. Zhou, S.-L., T. Funamoto, and J. Wen. 2004. Species relationships in Abelia section Abelia (Caprifoliaceae) in East Asia and verification of distribution of A. serrata in China: Evidence from AFLP analysis. Acta Botanica Yunnanica 26: 405-412.
78. Zhou, S.-L. and P. Qian. 2003. Matrix generator: A program for creating 0/1 matrix from sized DNA fragments. Acta Botanica Sinica 45: 766-769. (Pubitemid 37207966)