The Arabidopsis ESCRT protein-protein interaction network

Plant Molecular Biology

Volumn 76, Issue 1-2, 2011, Pages 85-96

  Shahriari, Mojgan ^a   Richter, Klaus ^a   Keshavaiah, Channa ^a,b   Sabovljevic, Aneta ^a   Huelskamp, Martin ^a   Schellmann, Swen ^a  

^a Botanical Institute   (Germany)

^b UNIVERSITY COLLEGE CORK   (Ireland)

Author keywords

Arabidopsis; Endosomal sorting; ESCRT; MVB; Protein trafficking; Protein protein network

Indexed keywords

ARABIDOPSIS PROTEIN; ESCRT PROTEIN; HYBRID PROTEIN; PHOTOPROTEIN;

ANIMAL; ARABIDOPSIS; ARTICLE; BIOLOGICAL MODEL; COMPUTER SIMULATION; CONFOCAL MICROSCOPY; CYTOLOGY; GENETICS; METABOLISM; METHODOLOGY; PROTEIN ANALYSIS; PROTEIN BINDING; PROTOPLAST; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION; TWO HYBRID SYSTEM;

ANIMALS; ARABIDOPSIS; ARABIDOPSIS PROTEINS; COMPUTER SIMULATION; ENDOSOMAL SORTING COMPLEXES REQUIRED FOR TRANSPORT; LUMINESCENT PROTEINS; MICROSCOPY, CONFOCAL; MODELS, BIOLOGICAL; PROTEIN BINDING; PROTEIN INTERACTION MAPPING; PROTOPLASTS; RECOMBINANT FUSION PROTEINS; SACCHAROMYCES CEREVISIAE; SIGNAL TRANSDUCTION; TWO-HYBRID SYSTEM TECHNIQUES;

ANIMALIA; ARABIDOPSIS; EUKARYOTA;

EID: 79956077228     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-011-9770-4     Document Type: Article

References (64)

1. Amerik AY, Nowak J, Swaminathan S, Hochstrasser M (2000) The Doa4 deubiquitinating enzyme is functionally linked to the vacuolar protein-sorting and endocytic pathways. Mol Biol Cell 11(10): 3365-3380.
2. Babst M (2005) A protein's final ESCRT. Traffic 6(1): 2-9.
3. Babst M, Sato TK, Banta LM, Emr SD (1997) Endosomal transport function in yeast requires a novel AAA-type ATPase, Vps4p. EMBO J 16(8): 1820-1831.
4. Babst M, Wendland B, Estepa EJ, Emr SD (1998) The Vps4p AAA ATPase regulates membrane association of a vps protein complex required for normal endosome function. EMBO J 17(11): 2982-2993.
5. Babst M, Katzmann DJ, Estepa-Sabal EJ, Meerloo T, Emr SD (2002a) ECRT-III: an endosome-associated heterooligomeric protein complex required for MVB sorting. Dev Cell 3(2): 271-282.
6. Babst M, Katzmann DJ, Snyder WB, Wendland B, Emr SD (2002b) Endosome-associated complex, ESCRT-II, recruits transport machinery for protein sorting at the multivesicular body. Dev Cell 3(2): 283-289.
7. Bilodeau PS, Urbanowski JL, Winistorfer SC, Piper RC (2002) The Vps27p Hse1p complex binds ubiquitin and mediates endosomal protein sorting. Nat Cell Biol 4(7): 534-539.
8. Bilodeau PS, Winistorfer SC, Kearney WR, Robertson AD, Piper RC (2003) Vps27-Hse1 and ESCRT-I complexes cooperate to increase efficiency of sorting ubiquitinated proteins at the endosome. J Cell Biol 163(2): 237-243.
9. Blanc C, Charette SJ, Mattei S, Aubry L, Smith EW, Cosson P, Letourneur F (2009) Dictyostelium TOM1 participates to an ancestral ESCRT-0 complex. Traffic 10(2): 161-171.
10. Bowers K, Lottridge J, Helliwell SB, Goldthwaite LM, Luzio JP, Stevens TH (2004) Protein-protein interactions of ESCRT complexes in the yeast Saccharomyces cerevisiae. Traffic 5(3): 194-210.
11. Carlton JG, Martin-Serrano J (2007) Parallels between cytokinesis and retroviral budding: a role for the ESCRT machinery. Science 316(5833): 1908-1912.
12. Chu T, Sun J, Saksena S, Emr SD (2006) New component of ESCRT-I regulates endosomal sorting complex assembly. J Cell Biol 175(5): 815-823.
13. Curtiss M, Jones C, Babst M (2007) Efficient cargo sorting by ESCRT-I and the subsequent release of ESCRT-I from multivesicular bodies requires the subunit Mvb12. Mol Biol Cell 18(2): 636-645.
14. Dupre S, Haguenauer-Tsapis R (2001) Deubiquitination step in the endocytic pathway of yeast plasma membrane proteins: crucial role of Doa4p ubiquitin isopeptidase. Mol Cell Biol 21(14): 4482-4494.
15. Fields S, Song OK (1989) A novel genetic system to detect protein-protein interactions. Nature 340(6230): 245-246.
16. Finken-Eigen M, Rohricht RA, Kohrer K (1997) The Vps4 gene is involved in protein transport out of a yeast pre-vacuolar endosome-like compartment. Curr Genet 31(6): 469-480.
17. Freeman CL (1977) A set of measures of centrality based on betweenness. Sociometry 40: 35-41.
18. Gietz RD, Schiestl RH, Willems AR, Woods RA (1995) Studies on the transformation of intact yeast-cells by the LiCc/s-DNA/PEG procedure. Yeast 11(4): 355-360.
19. Gigolashvili T, Berger B, Mock HP, Muller C, Weisshaar B, Flugge UI (2007) The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana. Plant J 50(5): 886-901.
20. Girvan M, Newman ME (2002) Community structure in social and biological networks. Proc Natl Acad Sci USA 99(12): 7821-7826.
21. Haas TJ, Sliwinski MK, Martinez DE, Preuss M, Ebine K, Ueda T, Nielsen E, Odorizzi G, Otegui MS (2007) The Arabidopsis AAA ATPase SKD1 is involved in multivesicular endosome function and interacts with its positive regulator LYST-INTERACTING PROTEIN5. Plant Cell 19(4): 1295-1312.
22. Hu CD, Chinenov Y, Kerppola TK (2002) Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation. Mol Cell 9(4): 789-798.
23. Hurley JH, Emr SD (2006) The ESCRT complexes: structure and mechanism of a membrane-trafficking network. Annu Rev Biophys Biomol Struct.
24. Jakoby MJ, Weinl C, Pusch S, Kuijt SJ, Merkle T, Dissmeyer N, Schnittger A (2006) Analysis of the subcellular localization, function, and proteolytic control of the Arabidopsis cyclin-dependent kinase inhibitor ICK1/KRP1. Plant Physiol 141(4): 1293-1305.
25. James P, Halladay J, Craig EA (1996) Genomic libraries and a host strain designed for highly efficient two-hybrid selection in yeast. Genetics 144(4): 1425-1436.
26. Katzmann DJ, Babst M, Emr SD (2001) Ubiquitin-dependent sorting into the multivesicular body pathway requires the function of a conserved endosomal protein sorting complex, ESCRT-I. Cell 106(2): 145-155.
27. Katzmann DJ, Stefan CJ, Babst M, Emr SD (2003) Vps27 recruits ESCRT machinery to endosomes during MVB sorting. J Cell Biol 162(3): 413-423.
28. Kostelansky MS, Sun J, Lee S, Kim J, Ghirlando R, Hierro A, Emr SD, Hurley JH (2006) Structural and functional organization of the ESCRT-I trafficking complex. Cell 125(1): 113-126.
29. Lalonde S, Ehrhardt DW, Loque D, Chen J, Rhee SY, Frommer WB (2008) Molecular and cellular approaches for the detection of protein-protein interactions: latest techniques and current limitations. Plant J 53(4): 610-635.
30. Leung KF, Dacks JB, Field MC (2008) Evolution of the multivesicular body ESCRT machinery; retention across the eukaryotic lineage. Traffic 9(10): 1698-1716.
31. Magliery TJ, Wilson CG, Pan W, Mishler D, Ghosh I, Hamilton AD, Regan L (2005) Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism. J Am Chem Soc 127(1): 146-157.
32. Mathur J, Koncz C (1998a) Establishment and maintenance of cell suspension cultures. Methods Mol Biol 82: 27-30.
33. Mathur J, Koncz C (1998b) Peg-mediated protoplast transformation with naked DNA. Methods Mol Biol 82: 267-276.
34. Morita E, Sandrin V, Alam SL, Eckert DM, Gygi SP, Sundquist WI (2007a) Identification of human MVB12 proteins as ESCRT-I subunits that function in HIV budding. Cell Host Microbe 2(1): 41-53.
35. Morita E, Sandrin V, Chung HY, Morham SG, Gygi SP, Rodesch CK, Sundquist WI (2007b) Human ESCRT and ALIX proteins interact with proteins of the midbody and function in cytokinesis. EMBO J 26(19): 4215-4227.
36. Mullen RT, McCartney AW, Flynn CR, Smith GST (2006) Peroxisome biogenesis and the formation of multivesicular peroxisomes during tombusvirus infection: a role for ESCRT? Can J Bot 84: 551-564.
37. Nelson BK, Cai X, Nebenführ A (2007) A multicolored set of in vivo organelle markers for co-localization studies in Arabidopsis and other plants. Plant J 51(6): 1126-1136.
38. Nickerson DP, Russell MR, Odorizzi G (2007) A concentric circle model of multivesicular body cargo sorting. EMBO Rep 8(7): 644-650.
39. Oestreich AJ, Davies BA, Payne JA, Katzmann DJ (2007) Mvb12 is a novel member of ESCRT-I involved in cargo selection by the multivesicular body pathway. Mol Biol Cell 18(2): 646-657.
40. Raiborg C, Stenmark H (2009) The ESCRT machinery in endosomal sorting of ubiquitylated membrane proteins. Nature 458(7237): 445-452.
41. Sakurai T, Satou M, Akiyama K, Iida K, Seki M, Kuromori T, Ito T, Konagaya A, Toyoda T, Shinozaki K (2005) Rarge: a large-scale database of RIKEN Arabidopsis resources ranging from transcriptome to phenome. Nucleic Acids Res 33(database issue): D647-D650.
42. Schellmann S, Pimpl P (2009) Coats of endosomal protein sorting: retromer and ESCRT. Curr Opin Plant Biol 12(6): 670-676.
43. Scheuring S, Bodor O, Rohricht RA, Muller S, Beyer A, Kohrer K (1999) Cloning, characterisation, and functional expression of the Mus musculus SKD1 gene in yeast demonstrates that the mouse SKD1 and the yeast Vps4 genes are orthologues and involved in intracellular protein trafficking. Gene 234(1): 149-159.
44. Scheuring S, Rohricht RA, Schoning-Burkhardt B, Beyer A, Muller S, Abts HF, Kohrer K (2001) Mammalian cells express two Vps4 proteins both of which are involved in intracellular protein trafficking. J Mol Biol 312(3): 469-480.
45. Seki M, Carninci P, Nishiyama Y, Hayashizaki Y, Shinozaki K (1998) High-efficiency cloning of Arabidopsis full-length cDNA by biotinylated cap trapper. Plant J 15(5): 707-720.
46. Seki M, Narusaka M, Kamiya A, Ishida J, Satou M, Sakurai T, Nakajima M, Enju A, Akiyama K, Oono Y, Muramatsu M, Hayashizaki Y, Kawai J, Carninci P, Itoh M, Ishii Y, Arakawa T, Shibata K, Shinagawa A, Shinozaki K (2002) Functional annotation of a full-length Arabidopsis cDNA collection. Science 296(5565): 141-145.
47. Shahriari M, Keshavaiah C, Scheuring D, Sabovljevic A, Pimpl P, Häusler RE, Hülskamp M, Schellmann S (2010) The AAA-ATPase AtSKD1 contributes to vacuolar maintenance of Arabidopsis thaliana. Plant J 64(1): 71-85.
48. Shi A, Pant S, Balklava Z, Chen CC, Figueroa V, Grant BD (2007) A novel requirement for C. elegans ALIX/ALX-1 in RME-1-mediated membrane transport. Curr Biol 17(22): 1913-1924.
49. Slagsvold T, Pattni K, Malerod L, Stenmark H (2006) Endosomal and non-endosomal functions of ESCRT proteins. Trends Cell Biol 16(6): 317-326.
50. Spitzer C, Schellmann S, Sabovljevic A, Shahriari M, Keshavaiah C, Bechtold N, Herzog M, Muller S, Hanisch FG, Hulskamp M (2006) The Arabidopsiselch mutant reveals functions of an ESCRT component in cytokinesis. Development 133(23): 4679-4689.
51. Spitzer C, Reyes FC, Buono R, Sliwinski MK, Haas TJ, Otegui MS (2009) The ESCRT-related CHMP1A and B proteins mediate multivesicular body sorting of auxin carriers in Arabidopsis and are required for plant development. Plant Cell.
52. Swaminathan S, Amerik AY, Hochstrasser M (1999) The Doa4 deubiquitinating enzyme is required for ubiquitin homeostasis in yeast. Mol Biol Cell 10(8): 2583-2594.
53. Teo H, Veprintsev DB, Williams RL (2004) Structural insights into endosomal sorting complex required for transport (ESCRT-I) recognition of ubiquitinated proteins. J Biol Chem 279(27): 28689-28696.
54. Teo H, Gill DJ, Sun J, Perisic O, Veprintsev DB, Vallis Y, Emr SD, Williams RL (2006) ESCRT-I core and ESCRT-II glue domain structures reveal role for glue in linking to ESCRT-I and membranes. Cell 125(1): 99-111.
55. Ueda T, Nakano A (2002) Vesicular traffic: an integral part of plant life. Curr Opin Plant Biol 5(6): 513-517.
56. Ueda T, Uemura T, Sato MH, Nakano A (2004) Functional differentiation of endosomes in Arabidopsis cells. Plant J 40(5): 783-789.
57. Viotti C, Bubeck J, Stierhof YD, Krebs M, Langhans M, van den Berg W, van Dongen W, Richter S, Geldner N, Takano J, Jurgens G, de Vries SC, Robinson DG, Schumacher K (2010) Endocytic and secretory traffic in Arabidopsis merge in the trans-golgi network/early endosome, an independent and highly dynamic organelle. Plant Cell 22(4): 1344-1357.
58. von Schwedler UK, Stuchell M, Muller B, Ward DM, Chung HY, Morita E, Wang HE, Davis T, He GP, Cimbora DM, Scott A, Krausslich HG, Kaplan J, Morham SG, Sundquist WI (2003) The protein network of HIV budding. Cell 114(6): 701-713.
59. Walter M, Chaban C, Schutze K, Batistic O, Weckermann K, Nake C, Blazevic D, Grefen C, Schumacher K, Oecking C, Harter K, Kudla J, Bracha-Drori K, Shichrur K, Katz A, Oliva M, Angelovici R, Yalovsky S, Ohad N (2004) Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation. Plant J 40(3): 428-438.
60. Winter V, Hauser MT (2006) Exploring the ESCRTing machinery in eukaryotes. Trends Plant Sci 11(3): 115-123.
61. Wollert T, Hurley JH (2010) Molecular mechanism of multivesicular body biogenesis by ESCRT complexes. Nature 464(7290): 864-869.
62. Wollert T, Wunder C, Lippincott-Schwartz J, Hurley JH (2009) Membrane scission by the ESCRT-III complex. Nature 458(7235): 172-177.
63. Yoshimori T, Yamagata F, Yamamoto A, Mizushima N, Kabeya Y, Nara A, Miwako I, Ohashi M, Ohsumi M, Ohsumi Y (2000) The mouse SKD1, a homologue of yeast Vps4p, is required for normal endosomal trafficking and morphology in mammalian cells. Mol Biol Cell 11(2): 747-763.
64. Yu H, Braun P, Yildirim MA, Lemmens I, Venkatesan K, Sahalie J, Hirozane-Kishikawa T, Gebreab F, Li N, Simonis N, Hao T, Rual JF, Dricot A, Vazquez A, Murray RR, Simon C, Tardivo L, Tam S, Svrzikapa N, Fan C, de Smet AS, Motyl A, Hudson ME, Park J, Xin X, Cusick ME, Moore T, Boone C, Snyder M, Roth FP, Barabasi AL, Tavernier J, Hill DE, Vidal M (2008) High-quality binary protein interaction map of the yeast interactome network. Science 322(5898): 104-110.