Integration of Solexa sequences on an ultradense genetic map in Brassica rapa L.

BMC Genomics

Volumn 12, Issue , 2011, Pages

  Li, Wei ^a,b   Zhang, Jiefu ^b,c   Mou, Yanglong ^b,d   Geng, Jianfeng ^b   McVetty, Peter B E ^b   Hu, Shengwu ^a   Li, Genyi ^b  

^a NORTHWEST A F UNIVERSITY   (China)

^b UNIVERSITY OF MANITOBA   (Canada)

^c INSTITUTE OF PLANT PROTECTION   (China)

^d BAYLOR COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PLANT DNA; PRIMER DNA;

ARTICLE; GENE LOCUS; GENE MAPPING; INBRED STRAIN; MARKER GENE; MOLECULAR CLONING; NONHUMAN; NUCLEIC ACID ANALYSIS; PLANT GENE; PLANT GENOME; POLYMERASE CHAIN REACTION; RAPESEED; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE RELATED AMPLIFIED POLYMORPHISM; TURNIP; CHROMOSOME MAP; DNA SEQUENCE; GENETIC MARKER; GENETIC POLYMORPHISM; GENETICS; METHODOLOGY; QUANTITATIVE TRAIT LOCUS; SYSTEM ANALYSIS;

BRASSICA RAPA;

BRASSICA RAPA; CHROMOSOME MAPPING; CLONING, MOLECULAR; DNA PRIMERS; GENETIC MARKERS; GENOME, PLANT; POLYMORPHISM, GENETIC; QUANTITATIVE TRAIT LOCI; SEQUENCE ANALYSIS, DNA; SYSTEMS INTEGRATION;

EID: 79956052010     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-12-249     Document Type: Article

References (26)

1. Jones N, Ougham H, Thomas H, Pasakinskiene I. Markers and mapping revisited: finding your gene. New Phytol 2009, 183:935-966. 10.1111/j.1469-8137.2009.02933.x, 19594696.
2. Sun ZD, Wang ZN, Tu JX, Zhang JF, Yu FQ, McVetty PB, Li GY. An ultradense genetic recombination map for Brassica napus, consisting of 13551 SRAP markers. Theor Appl Genet 2007, 114:1305-1317. 10.1007/s00122-006-0483-z, 17426959.
3. Zhang JF, Lu Y, Yuan YX, Zhang XW, Geng JF, Chen Y, Cloutier S, McVetty PB, Li GY. Map-based cloning and characterization of a gene controlling hairiness and seed coat color traits in Brassica rapa. Plant Mol Biol 2009, 69:553-563. 10.1007/s11103-008-9437-y, 19039665.
4. Zhang WW, He HL, Guan Y, Du H, Yuan LH, Li Z, Yao DQ, Pan JS, Cai R. Identification and mapping of molecular markers linked to the tuberculate fruit gene in the cucumber (Cucumis sativus L.). Theor Appl Genet 2010, 120:645-654. 10.1007/s00122-009-1182-3, 19847386.
5. Li Z, Pan J, Guan Y, Tao Q, He H, Si L, Cai R. Development and fine mapping of three co-dominant SCAR markers linked to the M/m gene in the cucumber plant (Cucumis sativus L.). Theor Appl Genet 2008, 117:1253-1260. 10.1007/s00122-008-0859-3, 18712515.
6. Mutlu N, Boyaci FH, Göçmen M, Abak K. Development of SRAP, SRAP-RGA, RAPD and SCAR markers linked with a Fusarium wilt resistance gene in eggplant. Theor Appl Genet 2008, 117:1303-1312. 10.1007/s00122-008-0864-6, 18712340.
7. Tanhuanpää P, Kalendar R, Schulman AH, Kiviharju E. A major gene for grain cadmium accumulation in oat (Avena sativa L.). Genome 2007, 50:588-594. 10.1139/G07-036, 17632580.
8. Castonguay Y, Cloutier J, Bertrand A, Michaud R, Laberge S. SRAP polymorphisms associated with superior freezing tolerance in alfalfa (Medicago sativa spp. Sativa). Theor Appl Genet 2010, 120:1611-1619. 10.1007/s00122-010-1280-2, 20143042.
9. Hao Q, Liu ZA, Shu QY, Zhang R, Rick JD, Wang LS. Studies on Paeonia cultivars and hybrids identification based on SRAP analysis. Hereditas 2008, 145:38-47. 10.1111/j.0018-0661.2008.2013.x, 18439232.
10. Budak H, Shearman RC, Parmaksiz I, Dweikat I. Comparative analysis of seeded and vegetative biotype buffalograsses based on phylogenetic relationship using ISSRs, SSRs, RAPDs, and SRAPs. Theor Appl Genet 2004, 109:280-288.
11. Gulsen O, Sever-Mutlu S, Mutlu N, Tuna M, Karaguzel O, Shearman RC, Riordan TP, Heng-Moss TM. Polyploidy creates higher diversity among Cynodon accessions as assessed by molecular markers. Theor Appl Genet 2009, 118:1309-1319. 10.1007/s00122-009-0982-9, 19229513.
12. Hale AL, Farnham MW, Nzaramba MN, Kimbeng CA. Heterosis for horticultural traits in broccoli. Theor Appl Genet 2007, 115:351-360. 10.1007/s00122-007-0569-2, 17554519.
13. Fu FY, Liu LZ, Chai YR, Chen L, Yang T, Jin MY, Ma AF, Yan XY, Zhang ZS, Li JN. Localization of QTLs for seed color using recombinant inbred lines of Brassica napus in different environments. Genome 2007, 50:840-854. 10.1139/G07-068, 17893725.
14. Via M, Gignoux C, Burchard EG. The 1000 Genomes Project: new opportunities for research and social challenges. Genome Med 2010, 21:3.
15. Edwards D, Batley J. Plant genome sequencing: applications for crop improvement. Plant Biotechnol J 2010, 8:2-9. 10.1111/j.1467-7652.2009.00459.x, 19906089.
16. Hyten DL, Cannon SB, Song Q, Weeks N, Fickus EW, Shoemaker RC, Specht JE, Farmer AD, May GD, Cregan PB. High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence. BMC Genomics 2010, 15:11-38.
17. Liu S, Chen HD, Makarevitch I, Shirmer R, Emrich SJ, Dietrich CR, Barbazuk WB, Springer NM, Schnable PS. High-throughput genetic mapping of mutants via quantitative single nucleotide polymorphism typing. Genetics 2010, 184:19-26. 10.1534/genetics.109.107557, 2815916, 19884313.
18. Huang XH, Feng Q, Qian Q, Zhao Q, Wang L, Wang A, Guan J, Fan D, Weng Q, Huang T, Dong G, Sang T, Han B. High-throughput genotyping by whole-genome resequencing. Genome Res 2009, 19:1068-1076. 10.1101/gr.089516.108, 2694477, 19420380.
19. Li G, Quiros CF. Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor Appl Genet 2001, 103:455-461.
20. UN Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilization. Japan J Bot 1953, 7:389-452. UN.
21. Cheng X, Xu J, Xia S, Gu J, Yang Y, Fu J, Qian X, Zhang S, Wu J, Liu K. Development and genetic mapping of microsatellite markers from genome survey sequences in Brassica napus. Theor Appl Genet 2009, 118:1121-1131. 10.1007/s00122-009-0967-8, 19190889.
22. Choi SR, Teakle GR, Plaha P. The reference genetic linkage map for the multinational Brassica rapa genome sequencing project. Theor Appl Genet 2007, 115:777-792. 10.1007/s00122-007-0608-z, 17646962.
23. Kim JS, Chung TY, King GJ, Jin M, Yang TJ, Jin YM, Kim HI, Park BS. A Sequence-Tagged Linkage Map of Brassica rapa. Genetics 2006, 174:29-39. 10.1534/genetics.106.060152, 1569789, 16988107.
24. Piquemal J, Cinquin E, Couton F, Rondeau C, Seignoret E, Doucet I, Perret D, Villeger MJ, Vincourt P, Blanchard P. Construction of an oilseed rape (Brassica napus L.) genetic map with SSR markers. Theor Appl Genet 2005, 111:1514-1523. 10.1007/s00122-005-0080-6, 16187118.
25. Suwabe K, Morgan C, Bancraft I. Integration of Brassica A genome genetic linkage map between Brassica napus and B. rapa. Genome 2008, 51:169-176. 10.1139/G07-113, 18356952.
26. Parkin IA, Gulden SM, Sharpe AG, Lukens L, Trick M, Osborn TC, Lydiate DJ. Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics 2005, 171:765-781. 10.1534/genetics.105.042093, 1456786, 16020789.