Localization of QTLs for seed color using recombinant inbred lines of Brassica napus in different environments

Genome

Volumn 50, Issue 9, 2007, Pages 840-854

  Fu, Fu You ^a   Liu, Lie Zhao ^a   Chai, You Rong ^a   Chen, Li ^a   Yang, Tao ^a   Jin, Meng Yang ^a   Ma, Ai Fen ^a   Yan, Xing Ying ^a   Zhang, Zheng Sheng ^a   Li, Jia Na ^a  

^a SOUTHWEST UNIVERSITY   (China)

Author keywords

Brassica napus L.; Quantitative trait locus (QTL); Recombinant inbred line (RIL); Seed color; Sequence related amplified polymorphism (SRAP); Simple sequence repeat (SSR)

Indexed keywords

ARTICLE; CHROMOSOME MAP; COLOR; COMPARATIVE STUDY; ENVIRONMENT; GENETIC MARKER; GENETIC RECOMBINATION; GENETICS; PLANT SEED; QUANTITATIVE TRAIT LOCUS; RAPESEED; SYNTENY;

BRASSICA NAPUS; CHROMOSOME MAPPING; COLOR; ENVIRONMENT; GENETIC MARKERS; QUANTITATIVE TRAIT LOCI; RECOMBINATION, GENETIC; SEEDS; SYNTENY;

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSICA NAPUS;

EID: 36348985093     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G07-068     Document Type: Article

References (51)

1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402. doi:10.1093/nar/25.17.3389.
2. Axelsson, T., Shavorskaya, O., and Lagercrantz, U. 2001. Multiple flowering time QTLs within several Brassica species could be the result of duplicated copies of one ancestral gene. Genome, 44: 856-864. doi:10.1139/gen-44-5-856.
3. Badani, A.G., Snowdon, R.J., Wittkop, B., Lipsa, F.D., Baetzel, R., Horn, R., et al. 2006. Colocalization of a partially dominant gene for yellow seed colour with a major QTL influencing acid detergent fibre (ADF) content in different crosses of oilseed rape (Brassica napus). Genome, 49: 1499-1509. doi:10.1139/G06-091.
4. Bancroft, I. 2006. Bancroft home page. Linkage maps of oilseed rape (Brassica napus) [online]. Available from http://www.jic.bbsrc.ac.uk/ staff/ian-bancroft/research_page3.htm [accessed 4 April 2006].
5. Budak, H., Shearman, R.C., Parmaksiz, I., and Dweikat, I. 2004. Comparative analysis of seeded and vegetative biotype buffalo-grasses based on phylogenetic relationship using ISSRs, SSRs, RAPDs, and SRAPs. Theor. Appl. Genet. 109: 280-288. doi:10.1007/s00122-004-1630-z.
6. Burns, M.J., Barnes, S.R., Bowman, J.G., Clarke, M.H., Werner, C.P., and Kearsey, M.J. 2003. QTL analysis of an intervarietal set of substitution lines in Brassica napus: seed oil content and fatty acid composition. Heredity, 90: 39-48. doi:10.1038/sj.hdy.6800176.
7. Delourme, R., Bouchereau, A., Hubert, N., Renard, M., and Landry, B.S. 1994. Identification of RAPD markers linked to a fertility restorer gene for the Ogura radish cytoplasmic male sterility of rapeseed (Brassica napus L.). Theor. Appl. Genet. 88: 741-748. doi:10.1007/BF01253979.
8. Ferreira, M.E., Williams, P.H., and Osborn, T.C. 1994. RFLP mapping of Brassica napus using doubled haploid lines. Theor. Appl. Genet. 89: 615-621. doi:10.1007/BF00222456.
9. Ferriol, M., Pico, B., and Nuez, F. 2003. Genetic diversity of a germplasm collection of Cucurbita pepo using SRAP and AFLP markers. Theor. Appl. Genet. 107: 271-282. doi:10.1007/s00122-003-1242-z.
10. Huang, N., Angeles, E.R., Doming, J., Magpantay, G., Singh, S., Zhang, G., et al. 1997. Pyramiding of bacterial blight resistance genes in rice: marker-assisted selection using RFLP and PCR. Theor. Appl. Genet. 95: 313-320. doi:10.1007/s001220050565.
11. Janeja, H.S., Banga, S.S., and Lakshmikumaran, M. 2003. Identification of AFLP markers linked to fertility restorer genes for tournefortii cytoplasmic male-sterility system in Brassica napus. Theor. Appl. Genet. 107: 148-154.
12. Kosambi, D.D. 1944. The estimation of map distances from recombination values. Ann. Eugen. 12: 172-175.
13. Li, G., and Quiros, C.F. 2001. Sequence-related amplified polymorphism (SRAP), a new marker system based on a simple PCR reaction: its application to mapping and gene tagging in Brassica. Theor. Appl. Genet. 103: 455-461. doi:10.1007/s001220100570.
14. Li, J.N., Zhang, X.K., Chen, L., Wang, R., and Chui, C. 1998. Initial study on the genetics of seed color of yellow-seeded lines (Brassica napus L.) from different genetic sources. Chin. J. Oil Crop Sci. 20: 16-19.
15. Li, J.N., Chen, L., Tang, Z.L., Zhang, X.K., and Yan, S.J. 2001. Genetic study and commercial application of the yellow-seeded rapeseed (Brassica napus L.). In Proceedings of the International Symposium on Rapeseed Science, Science Press, New York, 19-23 April 2001. pp. 28-34.
16. Liang, Y., Li, J.N., and Chen, L. 2003. Influence of red and blue light on seedcoat color of yellow and black-seed in B. napus. Chin. J. Oil Crop Sci. 25: 21-24.
17. Liang, M., Davis, E., Gardner, D., Cai, X., and Wu, Y. 2006. Involvement of AtLAC 15 in lignin synthesis in seeds and in root elongation of Arabidopsis. Planta, 224: 1185-1196. doi:10.1007/s00425-006-0300- 6.
18. Lin, Z.X., Zhang, X.L., Nie, Y.C., He, D.H., and Wu, M.Q. 2003. Construction of a genetic linkage map for cotton based on SRAP. Chin. Sci. Bull. 48: 2063-2067. doi:10.1360/03wc0193.
19. Liu, L.Z., Meng, J.L., Lin, N., Chen, L., Tang, Z.L., Zhang, X.K., and Li, J.N. 2006. QTL mapping of seed coat color for yellow-seeded Brassica napus. Acta Genet. Sin. 33: 181-187. doi:10.1016/S0379-4172(06)60037- 1.
20. Liu, Z.W., Fu, T.D., Tu, J.X., and Chen, Y. 2005. Inheritance of seed color and identification of RAPD and AFLP markers linked to the seed color gene in rapeseed (Brassica napus L.). Theor. Appl. Genet. 110: 303-310. doi:10.1007/s00122-004-1835-1.
21. Lombard, V., and Delourme, R. 2001. A consensus linkage map for rapeseed (Brassica napus L.): construction and integration of three individual maps from DH populations. Theor. Appl. Genet. 103: 491-507. doi:10.1007/s001220100560.
22. Lowe, A.J., Moule, C., Trick, M., and Edwards, K.J. 2004. Efficient large-scale development of microsatellites for marker and mapping applications in Brassica crop species. Theor. Appl. Genet. 108: 1103-1112. doi:10.1007/s00122-003-1522-7.
23. McCouch, S.R., Cho, Y.G., Yano, M., Paul, E., Blinstrub, M., Mori-shima, H., and Kinoshita, T. 1997. Report on QTL nomenclature. Rice Genet. Newsl. 14: 11-13.
24. Meng, J.L., Shi, S.W., Gan, L., Li, Z.Y., and Qu, X.S. 1998. The production of yellow-seeded Brassica napus (AACC) through crossing interspecific hybrids of B. campestris (AA) and B. carinata (BBCC) with B. napus. Euphytica, 103: 329-333. doi:10.1023/A: 1018646223643.
25. Mikkelsen, T.R., Jensen, J., and Jørgensen, R.B. 1996. Inheritance of oilseed rape (Brassica napus) RAPD markers in a backcross progeny with Brassica campestris. Theor. Appl. Genet. 92: 492-497. doi:10.1007/s001220050154.
26. Ölsson, G. 1960. Species crosses within the genus Brassica. II. Artificial Brassica napus L. Hereditas, 46: 351-396.
27. Parkin, I.A.P., Sharpe, A.G., Keith, D.J., and Lydiate, D.J. 1995. Identification of the A and C genomes of amphidiploid Brassica napus (oilseed rape). Genome, 38: 1122-1131.
28. Parkin, I.A.P., Gulden, S.M., Sharpe, A.G., Lukens, L., Trick, M., Osborn, T.C., and Lydiate, D.J. 2005. Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics, 171: 765-781. doi:10.1534/genetics.105.042093.
29. Piquemal, J., Cinquin, E., Couton, F., Rondeau, C., Seignoret, E., Doucet, I., et al. 2005. Construction of an oilseed rape (Brassica napus L.) genetic map with SSR markers. Theor. Appl. Genet. 111: 1514-1523. doi:10.1007/s00122-005-0080-6.
30. Rahman, M.H. 2001. Production of yellow-seeded Brassica napus through interspecific crosses. Plant Breed. 120: 463-472. doi:10.1046/j.1439-0523.2001.00640.x.
31. Santoni, S., and Bervillé, A. 1992. Characterization of the nuclear ribosomal DNA units and phylogeny of Beta L. wild forms and cultivated beets. Theor. Appl. Genet. 83: 533-542. doi:10.1007/ BF00226896.
32. Sharpe, A.G., Parkin, I.A.P., Keith, D.J., and Lydiate, D.J. 1995. Frequent non-reciprocal translocations in the amphidiploid genome of oilseed rape (Brassica napus). Genome, 38: 1112-1121.
33. Shrizadegan, M. 1986. Inheritance of seed color in Brassica napus L. Z. Pflanzenzuecht. 96: 140-146.
34. Somers, D.J., Rakow, G., Prabhu, V.K., and Friesen, K.R. 2001. Identification of a major gene and RAPD markers for yellow-seeded coat colour in Brassica napus. Genome, 44: 1077-1082. doi:10.1139/gen-44-6-1077.
35. SPSS Inc. 2004. SPSS®. Version 13.0 [computer program]. SPSS Inc., Chicago.
36. Stringam, G.R., Mcgregor, D.I., and Pawlowski, S.H. 1974. Chemical and morphological characteristics associated with seed coat colour in rapeseed. In Proceedings of the 4th International Rapeseed Conference, Giessen, Germany, 4-8 June 1974. pp. 99-108.
37. Tang, Z.L., Li, J.N., Zhang, X.K., Chen, L., and Wang, R. 1997. Genetic variation of yellow-seeded rapeseed lines (Brassica napus L.) from different genetic sources. Plant Breed. 116: 471-474. doi:10.1111/j.1439-0523.1997.tb01033.x.
38. Tanksley, S.D., Young, N.D., Paterson, A.H., and Bonierbale, M.W. 1989. RFLP mapping in plant breeding: new tools for an old science. Biol. Technology, 7: 257-264.
39. Tanksley, S.D., Ahn, N., Causse, M., Coffman, R., Fulton, T., McCouch, S.R., et al. 1991. RFLP mapping of the rice genome. In Rice genetics. International Rice Research Institute, Los Banos, Laguna, Phillipines. pp. 435-442.
40. van Deynze, A., and Pauls, K.P. 1994. The inheritance of seed color and vernalization requirement in Brassica napus and using doubling haploid populations. Euphytica, 74: 77-83. doi:10.1007/BF00033770.
41. van Deynze, A.E., Beversdorf, W.D., and Pauls, K.P. 1993. Temperature effects on seed color in black-and yellow-seeded rapeseed. Can. J. Plant Sci. 73: 383-387.
42. van Ooijen, J.W., and Voorrips, R.E. 2001. JoinMap 3.0: software for the calculation of genetic linkage maps. Plant Research International BV, Wageningen, the Netherlands. Available from http://www.kyazma.nl.
43. Voorrips, R.E. 2002. MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 93: 77-78.
44. Wang, J.X., Yang, G.S., Fu, T.D., and Meng, J.L. 2000. Development of PCR-based markers linked to the fertility restorer gene for the Polima cytoplasmic male sterility in rapeseed (Brassica napus L.). Acta Genet. Sin. 27: 1012-1016.
45. Wang, R., Li, J.N., Chen, L., Tang, Z.L., and Zhang, X.K. 2003. Genetic correlation analysis for main characters in yellow-seeded rapeseed lines (Brassica napus L.). Chin. J. Oil Crop Sci. 25: 8-11.
46. Wang, S., Basten, C.J., and Zeng, Z.B. 2006. Windows QTL Cartographer. Version 2.5 [computer program]. Department of Statistics, North Carolina State University, Raleigh, N.C. Available from http://statgen.ncsu.edu/qtlcart/ WQTLCart.htm.
47. Wu, J.S., Shi, S.W., and Wu, D.W. Liu, and H.L. 1999. Studies on the inheritance of yellow seedcoat in rapeseed (Brassica napus L). In Proceedings of the 10th International Rapeseed Congress, September 1999, Canberra, Australia. Edited by N. Wratten and P.A. Salisbury. The Regional Institute Ltd., Gosford, NSW, Australia. Available from http://www.regional.org.au/au/gcirc/4/146.htm [accessed 17 May 2006].
48. Yu, C.Y., Hu, S.W., Zhao, H.X., Guo, A.G., and Sun, G.L. 2005. Genetic distances revealed by morphological characters, isozymes, proteins and RAPD markers and their relationships with hybrid performance in oilseed rape (Brassica napus L.). Theor. Appl. Genet. 110: 511-518. doi:10.1007/s00122-004-1858-7.
49. Zhang, J., Guo, W., and Zhang, T.Z. 2002. Molecular linkage map of allotetraploid (Gossypium hirsutum L. x Gossypium barbadense L.) with a haploid population. Theor. Appl. Genet. 105: 1166-1174. doi:10.1007/s00122-002-1100-4.
50. Zhao, J., Becker, H.C., Zhang, D., Zhang, Y., and Ecke, W. 2006. Conditional QTL mapping of oil content in rapeseed with respect to protein content and traits related to plant development and grain yield. Theor. Appl. Genet. 113: 33-38. doi:10.1007/s00122-006-0267-5.
51. Zhao, J.W., and Meng, J.L. 2003. Genetic analysis of loci associated with partial resistance to Sclerotinia sclerotiorum in rapeseed (Brassica napus L.). Theor. Appl. Genet. 106: 759-764.