-
1
-
-
4644309196
-
The functions of animal microRNAs
-
Ambros V. The functions of animal microRNAs. Nature 2004, 431:350-355.
-
(2004)
Nature
, vol.431
, pp. 350-355
-
-
Ambros, V.1
-
2
-
-
49949116902
-
The impact of microRNAs on protein output
-
Baek D., Villen J., Shin C., Camargo F.D., Gygi S.P., Bartel D.P. The impact of microRNAs on protein output. Nature 2008, 455:64-71.
-
(2008)
Nature
, vol.455
, pp. 64-71
-
-
Baek, D.1
Villen, J.2
Shin, C.3
Camargo, F.D.4
Gygi, S.P.5
Bartel, D.P.6
-
3
-
-
33846064113
-
NCBI GEO: mining tens of millions of expression profiles-database and tools update
-
Barrett T., Troup D.B., Wilhite S.E., Ledoux P., Rudnev D., Evangelista C., Kim I.F., Soboleva A., Tomashevsky M., Edgar R. NCBI GEO: mining tens of millions of expression profiles-database and tools update. Nucleic Acids Res. 2007, 35:D760-D765.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Barrett, T.1
Troup, D.B.2
Wilhite, S.E.3
Ledoux, P.4
Rudnev, D.5
Evangelista, C.6
Kim, I.F.7
Soboleva, A.8
Tomashevsky, M.9
Edgar, R.10
-
4
-
-
38549124383
-
The microRNA.org resource: targets and expression
-
Betel D., Wilson M., Gabow A., Marks D.S., Sander C. The microRNA.org resource: targets and expression. Nucleic Acids Res. 2008, 36:D149-D153.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Betel, D.1
Wilson, M.2
Gabow, A.3
Marks, D.S.4
Sander, C.5
-
6
-
-
33749504736
-
MicroRNAs and the hallmarks of cancer
-
Dalmay T., Edwards D.R. MicroRNAs and the hallmarks of cancer. Oncogene 2006, 25:6170-6175.
-
(2006)
Oncogene
, vol.25
, pp. 6170-6175
-
-
Dalmay, T.1
Edwards, D.R.2
-
7
-
-
60149095444
-
Most mammalian mRNAs are conserved targets of microRNAs
-
Friedman R.C., Farh K.K., Burge C.B., Bartel D.P. Most mammalian mRNAs are conserved targets of microRNAs. Genome Res. 2009, 19:92-105.
-
(2009)
Genome Res.
, vol.19
, pp. 92-105
-
-
Friedman, R.C.1
Farh, K.K.2
Burge, C.B.3
Bartel, D.P.4
-
8
-
-
42249090353
-
MiR-21 gene expression triggered by AP-1 is sustained through a double-negative feedback mechanism
-
Fujita S., Ito T., Mizutani T., Minoguchi S., Yamamichi N., Sakurai K., Iba H. miR-21 gene expression triggered by AP-1 is sustained through a double-negative feedback mechanism. J. Mol. Biol. 2008, 378:492-504.
-
(2008)
J. Mol. Biol.
, vol.378
, pp. 492-504
-
-
Fujita, S.1
Ito, T.2
Mizutani, T.3
Minoguchi, S.4
Yamamichi, N.5
Sakurai, K.6
Iba, H.7
-
9
-
-
61849143920
-
MicroRNA target prediction by expression analysis of host genes
-
Gennarino V.A., Sardiello M., Avellino R., Meola N., Maselli V., Anand S., Cutillo L., Ballabio A., Banfi S. MicroRNA target prediction by expression analysis of host genes. Genome Res. 2009, 19:481-490.
-
(2009)
Genome Res.
, vol.19
, pp. 481-490
-
-
Gennarino, V.A.1
Sardiello, M.2
Avellino, R.3
Meola, N.4
Maselli, V.5
Anand, S.6
Cutillo, L.7
Ballabio, A.8
Banfi, S.9
-
10
-
-
33645124258
-
Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs
-
Giraldez A.J., Mishima Y., Rihel J., Grocock R.J., Van Dongen S., Inoue K., Enright A.J., Schier A.F. Zebrafish MiR-430 promotes deadenylation and clearance of maternal mRNAs. Science 2006, 312:75-79.
-
(2006)
Science
, vol.312
, pp. 75-79
-
-
Giraldez, A.J.1
Mishima, Y.2
Rihel, J.3
Grocock, R.J.4
Van Dongen, S.5
Inoue, K.6
Enright, A.J.7
Schier, A.F.8
-
12
-
-
33749059160
-
MiRBase: the microRNA sequence database
-
Griffiths-Jones S. miRBase: the microRNA sequence database. Meth. Mol. Biol. 2006, 342:129-138.
-
(2006)
Meth. Mol. Biol.
, vol.342
, pp. 129-138
-
-
Griffiths-Jones, S.1
-
13
-
-
77955644289
-
Mammalian microRNAs predominantly act to decrease target mRNA levels
-
Guo H., Ingolia N.T., Weissman J.S., Bartel D.P. Mammalian microRNAs predominantly act to decrease target mRNA levels. Nature 2010, 466:835-840.
-
(2010)
Nature
, vol.466
, pp. 835-840
-
-
Guo, H.1
Ingolia, N.T.2
Weissman, J.S.3
Bartel, D.P.4
-
14
-
-
3042767202
-
MicroRNAs: small RNAs with a big role in gene regulation
-
He L., Hannon G.J. MicroRNAs: small RNAs with a big role in gene regulation. Nat. Rev. Genet. 2004, 5:522-531.
-
(2004)
Nat. Rev. Genet.
, vol.5
, pp. 522-531
-
-
He, L.1
Hannon, G.J.2
-
15
-
-
63349094897
-
Alterations of the microRNA network cause neurodegenerative disease
-
Hebert S.S., De Strooper B. Alterations of the microRNA network cause neurodegenerative disease. Trends Neurosci. 2009, 32:199-206.
-
(2009)
Trends Neurosci.
, vol.32
, pp. 199-206
-
-
Hebert, S.S.1
De Strooper, B.2
-
16
-
-
36749005527
-
Using expression profiling data to identify human microRNA targets
-
Huang J.C., Babak T., Corson T.W., Chua G., Khan S., Gallie B.L., Hughes T.R., Blencowe B.J., Frey B.J., Morris Q.D. Using expression profiling data to identify human microRNA targets. Nat. Meth. 2007, 4:1045-1049.
-
(2007)
Nat. Meth.
, vol.4
, pp. 1045-1049
-
-
Huang, J.C.1
Babak, T.2
Corson, T.W.3
Chua, G.4
Khan, S.5
Gallie, B.L.6
Hughes, T.R.7
Blencowe, B.J.8
Frey, B.J.9
Morris, Q.D.10
-
17
-
-
58149185123
-
Ensembl 2009
-
Hubbard T.J., Aken B.L., Ayling S., Ballester B., Beal K., Bragin E., Brent S., Chen Y., Clapham P., Clarke L., Coates G., Fairley S., Fitzgerald S., Fernandez-Banet J., Gordon L., Graf S., Haider S., Hammond M., Holland R., Howe K., Jenkinson A., Johnson N., Kahari A., Keefe D., Keenan S., Kinsella R., Kokocinski F., Kulesha E., Lawson D., Longden I., Megy K., Meidl P., Overduin B., Parker A., Pritchard B., Rios D., Schuster M., Slater G., Smedley D., Spooner W., Spudich G., Trevanion S., Vilella A., Vogel J., White S., Wilder S., Zadissa A., Birney E., Cunningham F., Curwen V., Durbin R., Fernandez-Suarez X.M., Herrero J., Kasprzyk A., Proctor G., Smith J., Searle S., Flicek P. Ensembl 2009. Nucleic Acids Res. 2009, 37:D690-D697.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Hubbard, T.J.1
Aken, B.L.2
Ayling, S.3
Ballester, B.4
Beal, K.5
Bragin, E.6
Brent, S.7
Chen, Y.8
Clapham, P.9
Clarke, L.10
Coates, G.11
Fairley, S.12
Fitzgerald, S.13
Fernandez-Banet, J.14
Gordon, L.15
Graf, S.16
Haider, S.17
Hammond, M.18
Holland, R.19
Howe, K.20
Jenkinson, A.21
Johnson, N.22
Kahari, A.23
Keefe, D.24
Keenan, S.25
Kinsella, R.26
Kokocinski, F.27
Kulesha, E.28
Lawson, D.29
Longden, I.30
Megy, K.31
Meidl, P.32
Overduin, B.33
Parker, A.34
Pritchard, B.35
Rios, D.36
Schuster, M.37
Slater, G.38
Smedley, D.39
Spooner, W.40
Spudich, G.41
Trevanion, S.42
Vilella, A.43
Vogel, J.44
White, S.45
Wilder, S.46
Zadissa, A.47
Birney, E.48
Cunningham, F.49
Curwen, V.50
Durbin, R.51
Fernandez-Suarez, X.M.52
Herrero, J.53
Kasprzyk, A.54
Proctor, G.55
Smith, J.56
Searle, S.57
Flicek, P.58
more..
-
18
-
-
0036079158
-
The human genome browser at UCSC
-
Kent W.J., Sugnet C.W., Furey T.S., Roskin K.M., Pringle T.H., Zahler A.M., Haussler D. The human genome browser at UCSC. Genome Res. 2002, 12:996-1006.
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
Sugnet, C.W.2
Furey, T.S.3
Roskin, K.M.4
Pringle, T.H.5
Zahler, A.M.6
Haussler, D.7
-
19
-
-
18344369543
-
MicroRNA biogenesis: coordinated cropping and dicing
-
Kim V.N. MicroRNA biogenesis: coordinated cropping and dicing. Nat. Rev. Mol. Cell Biol. 2005, 6:376-385.
-
(2005)
Nat. Rev. Mol. Cell Biol.
, vol.6
, pp. 376-385
-
-
Kim, V.N.1
-
20
-
-
33846945735
-
Processing of intronic microRNAs
-
Kim Y.K., Kim V.N. Processing of intronic microRNAs. EMBO J. 2007, 26:775-783.
-
(2007)
EMBO J.
, vol.26
, pp. 775-783
-
-
Kim, Y.K.1
Kim, V.N.2
-
22
-
-
20944450160
-
Combinatorial microRNA target predictions
-
Krek A., Grun D., Poy M.N., Wolf R., Rosenberg L., Epstein E.J., MacMenamin P., da Piedade I., Gunsalus K.C., Stoffel M., Rajewsky N. Combinatorial microRNA target predictions. Nat. Genet. 2005, 37:495-500.
-
(2005)
Nat. Genet.
, vol.37
, pp. 495-500
-
-
Krek, A.1
Grun, D.2
Poy, M.N.3
Wolf, R.4
Rosenberg, L.5
Epstein, E.J.6
MacMenamin, P.7
da Piedade, I.8
Gunsalus, K.C.9
Stoffel, M.10
Rajewsky, N.11
-
24
-
-
13944282215
-
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
-
Lim L.P., Lau N.C., Garrett-Engele P., Grimson A., Schelter J.M., Castle J., Bartel D.P., Linsley P.S., Johnson J.M. Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs. Nature 2005, 433:769-773.
-
(2005)
Nature
, vol.433
, pp. 769-773
-
-
Lim, L.P.1
Lau, N.C.2
Garrett-Engele, P.3
Grimson, A.4
Schelter, J.M.5
Castle, J.6
Bartel, D.P.7
Linsley, P.S.8
Johnson, J.M.9
-
27
-
-
56549129538
-
Chromatin structure analyses identify miRNA promoters
-
Ozsolak F., Poling L.L., Wang Z., Liu H., Liu X.S., Roeder R.G., Zhang X., Song J.S., Fisher D.E. Chromatin structure analyses identify miRNA promoters. Genes Dev. 2008, 22:3172-3183.
-
(2008)
Genes Dev.
, vol.22
, pp. 3172-3183
-
-
Ozsolak, F.1
Poling, L.L.2
Wang, Z.3
Liu, H.4
Liu, X.S.5
Roeder, R.G.6
Zhang, X.7
Song, J.S.8
Fisher, D.E.9
-
28
-
-
58149203235
-
The database of experimentally supported targets: a functional update of TarBase
-
Papadopoulos G.L., Reczko M., Simossis V.A., Sethupathy P., Hatzigeorgiou A.G. The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res. 2009, 37:D155-D158.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Papadopoulos, G.L.1
Reczko, M.2
Simossis, V.A.3
Sethupathy, P.4
Hatzigeorgiou, A.G.5
-
29
-
-
34547571030
-
G:Profiler-a web-based toolset for functional profiling of gene lists from large-scale experiments
-
Reimand J., Kull M., Peterson H., Hansen J., Vilo J. g:Profiler-a web-based toolset for functional profiling of gene lists from large-scale experiments. Nucleic Acids Res. 2007, 35:W193-W200.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Reimand, J.1
Kull, M.2
Peterson, H.3
Hansen, J.4
Vilo, J.5
-
30
-
-
6344281172
-
Identification of mammalian microRNA host genes and transcription units
-
Rodriguez A., Griffiths-Jones S., Ashurst J.L., Bradley A. Identification of mammalian microRNA host genes and transcription units. Genome Res. 2004, 14:1902-1910.
-
(2004)
Genome Res.
, vol.14
, pp. 1902-1910
-
-
Rodriguez, A.1
Griffiths-Jones, S.2
Ashurst, J.L.3
Bradley, A.4
-
31
-
-
67749122634
-
A gene network regulating lysosomal biogenesis and function
-
Sardiello M., Palmieri M., di Ronza A., Medina D.L., Valenza M., Gennarino V.A., Di Malta C., Donaudy F., Embrione V., Polishchuk R.S., Banfi S., Parenti G., Cattaneo E., Ballabio A. A gene network regulating lysosomal biogenesis and function. Science 2009, 325:473-477.
-
(2009)
Science
, vol.325
, pp. 473-477
-
-
Sardiello, M.1
Palmieri, M.2
di Ronza, A.3
Medina, D.L.4
Valenza, M.5
Gennarino, V.A.6
Di Malta, C.7
Donaudy, F.8
Embrione, V.9
Polishchuk, R.S.10
Banfi, S.11
Parenti, G.12
Cattaneo, E.13
Ballabio, A.14
-
32
-
-
49949117302
-
Widespread changes in protein synthesis induced by microRNAs
-
Selbach M., Schwanhausser B., Thierfelder N., Fang Z., Khanin R., Rajewsky N. Widespread changes in protein synthesis induced by microRNAs. Nature 2008, 455:58-63.
-
(2008)
Nature
, vol.455
, pp. 58-63
-
-
Selbach, M.1
Schwanhausser, B.2
Thierfelder, N.3
Fang, Z.4
Khanin, R.5
Rajewsky, N.6
-
33
-
-
38049148026
-
DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis
-
Sherman B.T., Huang da W., Tan Q., Guo Y., Bour S., Liu D., Stephens R., Baseler M.W., Lane H.C., Lempicki R.A. DAVID Knowledgebase: a gene-centered database integrating heterogeneous gene annotation resources to facilitate high-throughput gene functional analysis. BMC Bioinform. 2007, 8:426.
-
(2007)
BMC Bioinform.
, vol.8
, pp. 426
-
-
Sherman, B.T.1
Huang da, W.2
Tan, Q.3
Guo, Y.4
Bour, S.5
Liu, D.6
Stephens, R.7
Baseler, M.W.8
Lane, H.C.9
Lempicki, R.A.10
-
34
-
-
79952199285
-
Is there a link between dysregulated miRNA expression and disease?
-
Thai T.H., Christiansen P.A., Tsokos G.C. Is there a link between dysregulated miRNA expression and disease?. Discov Med 2010, 10:184-194.
-
(2010)
Discov Med
, vol.10
, pp. 184-194
-
-
Thai, T.H.1
Christiansen, P.A.2
Tsokos, G.C.3
-
36
-
-
58149085504
-
MicroRNA control in the immune system: basic principles
-
Xiao C., Rajewsky K. MicroRNA control in the immune system: basic principles. Cell 2009, 136:26-36.
-
(2009)
Cell
, vol.136
, pp. 26-36
-
-
Xiao, C.1
Rajewsky, K.2
-
37
-
-
43049134831
-
MicroRNomics: a newly emerging approach for disease biology
-
Zhang C. MicroRNomics: a newly emerging approach for disease biology. Physiol. Genomics 2008, 33:139-147.
-
(2008)
Physiol. Genomics
, vol.33
, pp. 139-147
-
-
Zhang, C.1
|