Gene atlasing of digestive and reproductive tissues in Schistosoma mansoni

PLoS Neglected Tropical Diseases

Volumn 5, Issue 4, 2011, Pages

  Nawaratna, Sujeevi S K ^a,b   McManus, Donald P ^a   Moertel, Luke ^a   Gobert, Geoffrey N ^a,b   Jones, Malcolm K ^a,b  

^a QIMR BERGHOFER MEDICAL RESEARCH INSTITUTE   (Australia)

^b UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DIGESTIVE SYSTEM; DNA MICROARRAY; GASTRODERMIS; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENE LOCATION; GENITAL SYSTEM; LASER MICRODISSECTION MICROSCOPY; LASER MICROSCOPY; NONHUMAN; NUCLEOTIDE SEQUENCE; OVARY; SCHISTOSOMA MANSONI; TESTIS; TRANSCRIPTOMICS; UPREGULATION; VITELLINE MEMBRANE; ANIMAL; FEMALE; GASTROINTESTINAL TRACT; GENE EXPRESSION REGULATION; GENETICS; MALE; METABOLISM;

ANIMALS; FEMALE; GASTROINTESTINAL TRACT; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENITALIA; MALE; SCHISTOSOMA MANSONI;

EID: 79955866214     PISSN: 19352727     EISSN: 19352735     Source Type: Journal    
DOI: 10.1371/journal.pntd.0001043     Document Type: Article

References (53)

1. Berriman M, Haas BJ, LoVerde PT, Wilson RA, Dillon GP, et al. (2009) The genome of the blood fluke Schistosoma mansoni. Nature 460: 352-358.
2. Schistosoma japonicum Genome Sequencing and Functional Analysis Consortium (2009) The Schistosoma japonicum genome reveals features of host-parasite interplay. Nature 460: 345-351.
3. Han ZG, Brindley PJ, Wang SY, Chen Z, (2009) Schistosoma genomics: new perspectives on schistosome biology and host-parasite interaction. Annu Rev Genomics Hum Genet 10: 211-240.
4. Wilson RA, Ashton PD, Braschi S, Dillon GP, Berriman M, et al. (2007) 'Oming in on schistosomes: prospects and limitations for post-genomics. Trends Parasitol 23: 14-20.
5. Hu W, Yan Q, Shen DK, Liu F, Zhu ZD, et al. (2003) Evolutionary and biomedical implications of a Schistosoma japonicum complementary DNA resource. Nat Genet 35: 139-147.
6. Verjovski-Almeida S, DeMarco R, Martins EA, Guimaraes PE, Ojopi EP, et al. (2003) Transcriptome analysis of the acoelomate human parasite Schistosoma mansoni. Nat Genet 35: 148-157.
7. Gobert GN, Moertel L, Brindley PJ, McManus DP, (2009) Developmental gene expression profiles of the human pathogen Schistosoma japonicum. BMC Genomics 10: 128.
8. Mulvenna J, Moertel L, Jones MK, Nawaratna S, Lovas EM, et al. (2009) Exposed proteins of the Schistosoma japonicum tegument. Int J Parasitol 40: 543-554.
9. Gobert GN, (2010) Applications for profiling the schistosome transcriptome. Trends Parasitol 26: 434-439.
10. Jones MK, Higgins T, Stenzel DJ, Gobert GN, (2007) Towards tissue specific transcriptomics and expression pattern analysis in schistosomes using laser microdissection microscopy. Exp Parasitol 117: 259-266.
11. Gobert GN, McManus DP, Nawaratna S, Moertel L, Mulvenna J, et al. (2009) Tissue specific profiling of females of Schistosoma japonicum by integrated laser microdissection microscopy and microarray analysis. PLoS Negl Trop Dis 3: e469.
12. Dillon GP, Illes JC, Isaacs HV, Wilson RA, (2007) Patterns of gene expression in schistosomes: localization by whole mount in situ hybridization. Parasitology 134: 1589-1597.
13. Jones MK, Randall LM, McManus DP, Engwerda CR, (2004) Laser microdissection microscopy in parasitology: microscopes meet thermocyclers. Trends Parasitol 20: 502-506.
14. Verjovski-Almeida S, Venancio TM, Oliveira KC, Almeida GT, DeMarco R, (2007) Use of a 44k oligoarray to explore the transcriptome of Schistosoma mansoni adult worms. Exp Parasitol 117: 236-245.
15. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41: 95-98.
16. Gobert GN, Tran MH, Moertel L, Mulvenna J, Jones MK, et al. (2010) Transcriptional Changes in Schistosoma mansoni during early schistosomula development and in the presence of erythrocytes. PLoS Negl Trop Dis 4: e600.
17. Patterson TA, Lobenhofer EK, Fulmer-Smentek SB, Collins PJ, Chu TM, et al. (2006) Performance comparison of one-color and two-color platforms within the MicroArray Quality Control (MAQC) project. Nat Biotechnol 24: 1140-1150.
18. Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
19. Moertel L, Gobert GN, McManus DP, (2008) Comparative real-time PCR and enzyme analysis of selected gender-associated molecules in Schistosoma japonicum. Parasitology 135: 575-583.
20. Morey JS, Ryan JC, Van Dolah FM, (2006) Microarray validation: factors influencing correlation between oligonucleotide microarrays and real-time PCR. Biol Proced Online 8: 175-193.
21. Bos DH, Mayfield C, Minchella DJ, (2009) Analysis of regulatory protease sequences identified through bioinformatic data mining of the Schistosoma mansoni genome. BMC Genomics 10: 488.
22. Delcroix M, Sajid M, Caffrey CR, Lim KC, Dvorak J, et al. (2006) A multienzyme network functions in intestinal protein digestion by a platyhelminth parasite. J Biol Chem 281: 39316-39329.
23. Brindley PJ, Kalinna BH, Wong JY, Bogitsh BJ, King LT, et al. (2001) Proteolysis of human hemoglobin by schistosome cathepsin D. Mol Biochem Parasitol 112: 103-112.
24. Caffrey CR, McKerrow JH, Salter JP, Sajid M, (2004) Blood 'n' guts: an update on schistosome digestive peptidases. Trends Parasitol 20: 241-248.
25. Halton DW, (1997) Nutritional adaptations to parasitism within the platyhelminthes. Int J Parasitol 27: 693-704.
26. Cass CL, Johnson JR, Califf LL, Xu T, Hernandez HJ, et al. (2007) Proteomic analysis of Schistosoma mansoni egg secretions. Mol Biochem Parasitol 155: 84-93.
27. Infante RE, Wang ML, Radhakrishnan A, Kwon HJ, Brown MS, et al. (2008) NPC2 facilitates bidirectional transfer of cholesterol between NPC1 and lipid bilayers, a step in cholesterol egress from lysosomes. Proc Natl Acad Sci U S A 105: 15287-15292.
28. Storch J, Xu Z, (2009) Niemann-Pick C2 (NPC2) and intracellular cholesterol trafficking. Biochim Biophys Acta 1791: 671-678.
29. Wu LL, Zhou XF, (2009) Huntingtin associated protein 1 and its functions. Cell Adh Migr 3: 71-76.
30. Albertti LA, Macedo AM, Chiari E, Andrews NW, Andrade LO, (2010) Role of host lysosomal associated membrane protein (LAMP) in Trypanosoma cruzi invasion and intracellular development. Microbes Infect 12: 784-789.
31. Howe CL, Granger BL, Hull M, Green SA, Gabel CA, et al. (1988) Derived protein sequence, oligosaccharides, and membrane insertion of the 120-kDa lysosomal membrane glycoprotein (lgp120): identification of a highly conserved family of lysosomal membrane glycoproteins. Proc Natl Acad Sci U S A 85: 7577-7581.
32. Zhang Z, Chang H, Li Y, Zhang T, Zou J, et al. (2010) MicroRNAs: potential regulators involved in human anencephaly. Int J Biochem Cell Biol 42: 367-374.
33. Zhang H, Tompkins K, Garrigues J, Snead ML, Gibson CW, et al. (2010) Full length amelogenin binds to cell surface LAMP-1 on tooth root/periodontium associated cells. Arch Oral Biol 55: 417-425.
34. Thomson SA, Baldwin WS, Wang YH, Kwon G, Leblanc GA, (2009) Annotation, phylogenetics, and expression of the nuclear receptors in Daphnia pulex. BMC Genomics 10: 500.
35. King-Jones K, Charles JP, Lam G, Thummel CS, (2005) The ecdysone-induced DHR4 orphan nuclear receptor coordinates growth and maturation in Drosophila. Cell 121: 773-784.
36. Primakoff P, Myles DG, (2000) The ADAM gene family: surface proteins with adhesion and protease activity. Trends Genet 16: 83-87.
37. Almeida EA, Huovila AP, Sutherland AE, Stephens LE, Calarco PG, et al. (1995) Mouse egg integrin alpha 6 beta 1 functions as a sperm receptor. Cell 81: 1095-1104.
38. Krueger DA, Warner EA, Dowd DR, (2000) Involvement of thyrotroph embryonic factor in calcium-mediated regulation of gene expression. J Biol Chem 275: 14524-14531.
39. Vermeulen K, Van Bockstaele DR, Berneman ZN, (2003) The cell cycle: a review of regulation, deregulation and therapeutic targets in cancer. Cell Prolif 36: 131-149.
40. Edwards DR, Handsley MM, Pennington CJ, (2008) The ADAM metalloproteinases. Mol Aspects Med 29: 258-289.
41. Loverde PT, Osman A, Hinck A, (2007) Schistosoma mansoni: TGF-beta signaling pathways. Exp Parasitol 117: 304-317.
42. LoVerde PT, Andrade LF, Oliveira G, (2009) Signal transduction regulates schistosome reproductive biology. Curr Opin Microbiol 12: 422-428.
43. Beckmann S, Quack T, Burmeister C, Buro C, Long T, et al. (2010) Schistosoma mansoni: signal transduction processes during the development of the reproductive organs. Parasitology 137: 497-520.
44. Albertin G, Malendowicz LK, Macchi C, Markowska A, Nussdorfer GG, (2000) Cerebellin stimulates the secretory activity of the rat adrenal gland: in vitro and in vivo studies. Neuropeptides 34: 7-11.
45. Martinez-Salgado C, Benckendorff AG, Chiang LY, Wang R, Milenkovic N, et al. (2007) Stomatin and sensory neuron mechanotransduction. J Neurophysiol 98: 3802-3808.
46. Chalmers IW, McArdle AJ, Coulson RM, Wagner MA, Schmid R, et al. (2008) Developmentally regulated expression, alternative splicing and distinct sub-groupings in members of the Schistosoma mansoni venom allergen-like (SmVAL) gene family. BMC Genomics 9: 89.
47. DeMarco R, Mathieson W, Manuel SJ, Dillon GP, Curwen RS, et al. (2010) Protein variation in blood-dwelling schistosome worms generated by differential splicing of micro-exon gene transcripts. Genome Res 20: 1112-1121.
48. Munn EA, Smith TS, Smith H, James FM, Smith FC, et al. (1997) Vaccination against Haemonchus contortus with denatured forms of the protective antigen H11. Parasite Immunol 19: 243-248.
49. Knox DP, Redmond DL, Newlands GF, Skuce PJ, Pettit D, et al. (2003) The nature and prospects for gut membrane proteins as vaccine candidates for Haemonchus contortus and other ruminant trichostrongyloids. Int J Parasitol 33: 1129-1137.
50. Newton SE, Munn EA, (1999) The development of vaccines against gastrointestinal nematode parasites, particularly Haemonchus contortus. Parasitol Today 15: 116-122.
51. Willadsen P, Bird P, Cobon GS, Hungerford J, (1995) Commercialisation of a recombinant vaccine against Boophilus microplus. Parasitology 110 (Suppl): S43-50.
52. Morris GP, (1968) Fine structure of the gut epithelium of Schistosoma mansoni. Experientia 24: 480-482.
53. Toh SQ, Glanfield A, Gobert GN, Jones MK, (2010) Heme and blood-feeding parasites: friends or foes? Parasit Vectors 3: 108.