Identification of MicroRNA target genes in vivo

Molecular Biotechnology

Volumn 47, Issue 3, 2011, Pages 200-204

  Zheng, Wei ^a   Zou, Hua Wei ^a   Tan, Yong Gang ^a   Cai, Wei Song ^a  

^a CHINA MEDICAL UNIVERSITY   (China)

Author keywords

Biotin; Hsa miR155; MicroRNA; Target isolation

Indexed keywords

BIOTIN; CELL FATES; ENDONUCLEASES; HSA-MIR155; IN-SILICO; IN-VITRO; IN-VIVO; INTRONIC SEQUENCES; MAGNETIC BEADS; MICRORNA; MICRORNAS; NON-CODING RNAS; TARGET GENES; TUMOR DEVELOPMENT;

ANIMALS; COENZYMES;

GENE EXPRESSION;

BIOTIN; DICER; DROSHA; ENDONUCLEASE; MESSENGER RNA; MICRORNA; STREPTAVIDIN; UNCLASSIFIED DRUG;

ARTICLE; CELL FATE; CONTROLLED STUDY; GENE EXPRESSION; GENE IDENTIFICATION; GENE TARGETING; HUMAN; HUMAN CELL; RNA SYNTHESIS; BIOLOGICAL MODEL; BIOTINYLATION; GENETIC TRANSFECTION; GENETICS; METABOLISM; SYNTHESIS; TUMOR CELL LINE;

ANIMALIA;

BIOTINYLATION; CELL LINE, TUMOR; HUMANS; MICRORNAS; MODELS, BIOLOGICAL; RNA, MESSENGER; TRANSFECTION;

EID: 79955864233     PISSN: 10736085     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12033-010-9329-7     Document Type: Article

References (30)

1. Garzon, R., Calin, G. A., & Croce, C. M. (2009). MicroRNAs in cancer. Annual Review of Medicine, 60, 167-179.
2. Cai, X., Hagedorn, C. H., & Cullen, B. R. (2004). Human microRNAs are processed from capped, polyadenylated transcripts that can also function as mRNAs. RNA, 10, 1957-1966. (Pubitemid 39557833)
3. Denli, A. M., Tops, B. B., Plasterk, R. H., Ketting, R. F., & Hannon, G. J. (2004). Processing of primary microRNAs by the Microprocessor complex. Nature, 432, 231-235. (Pubitemid 39545854)
4. Gregory, R. I., Yan, K. P., Amuthan, G., Chendrimada, T., Doratotaj, B., Cooch, N., et al. (2004). The Microprocessor complex mediates the genesis of microRNAs. Nature, 432, 235-240. (Pubitemid 39545855)
5. Lee, Y., Ahn, C., Han, J., Choi, H., Kim, J., Yim, J., et al. (2003). The nuclear RNase III Drosha initiates microRNA processing. Nature, 425, 415-419. (Pubitemid 37187272)
6. Han, J., Lee, Y., Yeom, K. H., Nam, J. W., Heo, I., Rhee, J. K., et al. (2006). Molecular basis for the recognition of primary microRNAs by the Drosha-DGCR8 complex. Cell, 125, 887-901. (Pubitemid 43810154)
7. Lund, E., Guttinger, S., Calado, A., Dahlberg, J. E., & Kutay, U. (2004). Nuclear export of microRNA precursors. Science, 303, 95-98. (Pubitemid 38055779)
8. Hutvagner, G., McLachlan, J., Pasquinelli, A. E., Balint, E., Tuschl, T., & Zamore, P. D. (2001). A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA. Science, 293, 834-838. (Pubitemid 32743968)
9. Salzman, D. W., Shubert-Coleman, J., & Furneaux, H. (2007). P68 RNA helicase unwinds the human let-7 microRNA precursor duplex and is required for let-7-directed silencing of gene expression. Journal of Biological Chemistry, 282, 32773-32779. (Pubitemid 350159271)
10. Khvorova, A., Reynolds, A., & Jayasena, S. D. (2003). Functional siRNAs and miRNAs exhibit strand bias. Cell, 115, 209-216. (Pubitemid 37329584)
11. Schwarz, D. S., Hutvagner, G., Du, T., Xu, Z., Aronin, N., & Zamore, P. D. (2003). Asymmetry in the assembly of the RNAi enzyme complex. Cell, 115, 199-208. (Pubitemid 37329583)
12. Sen, G. L., & Blau, H. M. (2005). Argonaute 2/RISC resides in sites of mammalian mRNA decay known as cytoplasmic bodies. Nature Cell Biology, 7, 633-636. (Pubitemid 40796987)
13. Orom, U. A., Nielsen, F. C., & Lund, A. H. (2008). MicroRNA- 10a binds the 50UTR of ribosomal protein mRNAs and enhances their translation. Molecular Cell, 30, 460-471. (Pubitemid 351672378)
14. Khraiwesh, B., Arif, M. A., Seumel, G. I., Ossowski, S., Weigel, D., Reski, R., et al. (2010). Transcriptional control of gene expression by microRNAs. Cell, 140, 111-122.
15. Stadler, B. M., & Ruohola-Baker, H. (2008). Small RNAs: Keeping stem cells in line. Cell, 132, 563-566. (Pubitemid 351255612)
16. Enright, A. J., John, B., Gaul, U., Tuschl, T., Sander, C., & Marks, D. S. (2003). MicroRNA targets in Drosophila. Genome Biology, 5, R1.
17. Lewis, B. P., Shih, I. H., Jones-Rhoades, M. W., Bartel, D. P., & Burge, C. B. (2003). Prediction of mammalian microRNA targets. Cell, 115, 787-798. (Pubitemid 38058492)
18. Rehmsmeier, M., Steffen, P., Hochsmann, M., & Giegerich, R. (2004). Fast and effective prediction of microRNA/target duplexes. RNA, 10, 1507-1517. (Pubitemid 39288185)
19. Krek, A., Grun, D., Poy, M. N., Wolf, R., Rosenberg, L., Epstein, E. J., et al. (2005). Combinatorial microRNA target predictions. Nature Genetics, 37, 495-500. (Pubitemid 40617277)
20. Burgler, C., & Macdonald, P. M. (2005). Prediction and verification of microRNA targets by MovingTargets, a highly adaptable prediction method. BMC Genomics, 6, 88.
21. Ambros, V., Bartel, B., Bartel, D. P., Burge, C. B., Carrington, J. C., Chen, X., et al. (2003). A uniform system for microRNA annotation. RNA, 9, 277-279. (Pubitemid 36246165)
22. Karginov, F. V., Conaco, C., Xuan, Z., Schmidt, B. H., Parker, J. S., Mandel, G., et al. (2007). A biochemical approach to identifying microRNA targets. Proceedings of the National Academy of Sciences of the United States of America, 104, 19291-19296.
23. Tan, L. P., Seinen, E., Duns, G., de Jong, D., Sibon, O. C., Poppema, S., et al. (2009). A high throughput experimental approach to identify miRNA targets in human cells. Nucleic Acids Research, 37, e137.
24. Orom, U. A., & Lund, A. H. (2007). Isolation of microRNA targets using biotinylated synthetic microRNAs. Methods, 43, 162-165. (Pubitemid 47419361)
25. Hsu, R. J., Yang, H. J., & Tsai, H. J. (2009). Labeled microRNA pull-down assay system: An experimental approach for highthroughput identification of microRNA-target mRNAs. Nucleic Acids Research, 37, e77.
26. Nonne, N., Ameyar-Zazoua, M., Souidi, M., & Harel-Bellan, A. (2010). Tandem affinity purification of miRNA target mRNAs (TAP-Tar). Nucleic Acids Research, 38, e20.
27. Faraoni, I., Antonetti, F. R., Cardone, J., & Bonmassar, E. (2009). miR-155 gene: A typical multifunctional microRNA. Biochimica et Biophysica Acta, 1792, 497-505.
28. Ma, J. B., Ye, K., & Patel, D. J. (2004). Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain. Nature, 429, 318-322. (Pubitemid 38684819)
29. Parker, J. S., Roe, S. M., & Barford, D. (2005). Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex. Nature, 434, 663-666. (Pubitemid 40488560)
30. Wang, Y., Juranek, S., Li, H., Sheng, G., Tuschl, T., & Patel, D. J. (2008). Structure of an argonaute silencing complex with a seedcontaining guide DNA and target RNA duplex. Nature, 456, 921-926.