-
1
-
-
44649150510
-
Recent insights in islet amyloid polypeptide-induced membrane disruption and its role in beta-cell death in type 2 diabetes mellitus
-
Khemtémourian, L.; Killian, J. A.; Höppener, J. W. M.; Engel, M. F. M. Recent insights in islet amyloid polypeptide-induced membrane disruption and its role in beta-cell death in type 2 diabetes mellitus Exp. Diabetes Res. 2008, 2008, 1-9
-
(2008)
Exp. Diabetes Res.
, vol.2008
, pp. 1-9
-
-
Khemtémourian, L.1
Killian, J.A.2
Höppener, J.W.M.3
Engel, M.F.M.4
-
2
-
-
0035969513
-
Islet amyloid and type 2 diabetes: From molecular misfolding to islet pathophysiology
-
DOI 10.1016/S0925-4439(01)00078-3, PII S0925443901000783
-
Jaikaran, E. T. A. S.; Clark, A. Islet amyloid and type 2 diabetes: from molecular misfolding to islet pathophysiology Biochim. Biophys. Acta 2001, 1537, 179-203 (Pubitemid 33139801)
-
(2001)
Biochimica et Biophysica Acta - Molecular Basis of Disease
, vol.1537
, Issue.3
, pp. 179-203
-
-
Jaikaran, E.T.A.S.1
Clark, A.2
-
3
-
-
44649119876
-
Human Islet Amyloid Polypeptide Transgenic Mice: In Vivo and Ex Vivo Models for the Role of hIAPP in Type 2 Diabetes Mellitus
-
Höppener, J. W. M.; Jacobs, H. M.; Wierup, N.; Sotthewes, G.; Sprong, M.; de Vos, P.; Berger, R.; Sundler, F.; Ahrén, B. Human Islet Amyloid Polypeptide Transgenic Mice: In Vivo and Ex Vivo Models for the Role of hIAPP in Type 2 Diabetes Mellitus Exp. Diabetes Res. 2008, 2008, 1-8
-
(2008)
Exp. Diabetes Res.
, vol.2008
, pp. 1-8
-
-
Höppener, J.W.M.1
Jacobs, H.M.2
Wierup, N.3
Sotthewes, G.4
Sprong, M.5
De Vos, P.6
Berger, R.7
Sundler, F.8
Ahrén, B.9
-
4
-
-
62349103113
-
Amyloid deposition in transplanted human pancreatic islets: A conceivable cause of their long-term failure
-
Andersson, A.; Bohman, S.; Borg, L. A. H.; Paulsson, J. F.; Schultz, S. W.; Westermark, G. T.; Westermark, P. Amyloid deposition in transplanted human pancreatic islets: a conceivable cause of their long-term failure Exp. Diabetes Res, 2008, 2008, 1-8
-
(2008)
Exp. Diabetes Res
, vol.2008
, pp. 1-8
-
-
Andersson, A.1
Bohman, S.2
Borg, L.A.H.3
Paulsson, J.F.4
Schultz, S.W.5
Westermark, G.T.6
Westermark, P.7
-
5
-
-
43549100675
-
Islet amyloid in type 2 diabetes, and the toxic oligomer hypothesis
-
DOI 10.1210/er.2007-0037
-
Haataja, L.; Gurlo, T.; Huang, C. J.; Butler, P. C. Islet Amyloid in Type 2 Diabetes, and the Toxic Oligomer Hypothesis Endocr. Rev 2008, 29, 303-316 (Pubitemid 351679701)
-
(2008)
Endocrine Reviews
, vol.29
, Issue.3
, pp. 303-316
-
-
Haataja, L.1
Gurlo, T.2
Huang, C.J.3
Butler, P.C.4
-
6
-
-
0034723150
-
Identification of a penta- and hexapeptide of islet amyloid polypeptide (IAPP) with amyloidogenic and cytotoxic properties
-
Tenidis, K.; Waldner, M.; Bernhagen, J.; Fischle, W.; Bergmann, M.; Weber, M.; Merkle, M.-L.; Voelter, W.; Brunner, H.; Kapurniotu, A. Identification of a penta- and hexapeptide of islet amyloid polypeptide (IAPP) with amyloidogenic and cytotoxic properties J. Mol. Biol. 2000, 295, 1055-1071
-
(2000)
J. Mol. Biol.
, vol.295
, pp. 1055-1071
-
-
Tenidis, K.1
Waldner, M.2
Bernhagen, J.3
Fischle, W.4
Bergmann, M.5
Weber, M.6
Merkle, M.-L.7
Voelter, W.8
Brunner, H.9
Kapurniotu, A.10
-
7
-
-
67749097800
-
Induction of negative curvature as a mechanism of cell toxicity by amyloidogenic peptides: The case of islet amyloid polypeptide
-
Smith, P. E. S.; Jeffrey, R. B.; Ayyalusamy, R. Induction of negative curvature as a mechanism of cell toxicity by amyloidogenic peptides: the case of islet amyloid polypeptide J. Am. Chem. Soc. 2009, 131, 4470-4478
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 4470-4478
-
-
Smith, P.E.S.1
Jeffrey, R.B.2
Ayyalusamy, R.3
-
8
-
-
77955312210
-
Amyloidogenic protein-membrane interactions: Mechanistic insight from model systems
-
Butterfield, S. M.; Lashuel, H. A. Amyloidogenic protein-membrane interactions: mechanistic insight from model systems Angew. Chem., Int. Ed. 2010, 49, 5628-5654
-
(2010)
Angew. Chem., Int. Ed.
, vol.49
, pp. 5628-5654
-
-
Butterfield, S.M.1
Lashuel, H.A.2
-
9
-
-
36749033116
-
Peptide conformation and supramolecular organization in amylin fibrils: Constraints from solid-state NMR
-
DOI 10.1021/bi701427q
-
Luca, S.; Yau, W.-M.; Leapman, R.; Tycko, R. Peptide conformation and supramolecular organization in amylin fibrils: constraints from solid-state NMR Biochemistry 2007, 46, 13505-13522 (Pubitemid 350209947)
-
(2007)
Biochemistry
, vol.46
, Issue.47
, pp. 13505-13522
-
-
Luca, S.1
Yau, W.-M.2
Leapman, R.3
Tycko, R.4
-
10
-
-
0033856165
-
Amyloid fibril formation from full-length and fragments of amylin
-
Goldsbury, C.; Goldie, K.; Pellaud, J.; Seelig, J.; Frey, P.; Muller, S. A.; Kistler, J.; Cooper, G. J. S.; Aebi, U. Amyloid fibril formation from full-length and fragments of amylin J. Struct. Biol. 2000, 130, 352-362
-
(2000)
J. Struct. Biol.
, vol.130
, pp. 352-362
-
-
Goldsbury, C.1
Goldie, K.2
Pellaud, J.3
Seelig, J.4
Frey, P.5
Muller, S.A.6
Kistler, J.7
Cooper, G.J.S.8
Aebi, U.9
-
11
-
-
16244376187
-
The parallel superpleated beta-structure as a model for amyloid fibrils of human amylin
-
DOI 10.1016/j.jmb.2005.02.029
-
Kajava, A. V.; Aebi, U.; Steven, A. C. The Parallel Superpleated Beta-structure as a Model for Amyloid Fibrils of Human Amylin J. Mol. Biol. 2005, 348, 247-252 (Pubitemid 40462093)
-
(2005)
Journal of Molecular Biology
, vol.348
, Issue.2
, pp. 247-252
-
-
Kajava, A.V.1
Aebi, U.2
Steven, A.C.3
-
12
-
-
67650022868
-
Atomic structures of IAPP (amylin) fusions suggest a mechanism for fibrillation and the role of insulin in the process
-
Wiltzius, J. J. W.; Sievers, S. A.; Sawaya, M. R.; Eisenberg, D. Atomic structures of IAPP (amylin) fusions suggest a mechanism for fibrillation and the role of insulin in the process Protein Sci. 2009, 18, 1521-1530
-
(2009)
Protein Sci.
, vol.18
, pp. 1521-1530
-
-
Wiltzius, J.J.W.1
Sievers, S.A.2
Sawaya, M.R.3
Eisenberg, D.4
-
13
-
-
77950825396
-
Molecular structures of quiescently grown and brain-derived polymorphic fibrils of the Alzheimer amyloid abeta9?40 peptide: A comparison to agitated fibrils
-
Wu, C.; Bowers, M. T.; Shea, J.-E. Molecular structures of quiescently grown and brain-derived polymorphic fibrils of the Alzheimer amyloid abeta9?40 peptide: a comparison to agitated fibrils PLoS Comput. Biol. 2010, 6, e1000693
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. 1000693
-
-
Wu, C.1
Bowers, M.T.2
Shea, J.-E.3
-
14
-
-
78651268241
-
Structural polymorphism of human islet amyloid polypeptide (hIAPP) oligomers highlights the importance of interfacial residue interactions
-
Zhao, J.; Yu, X.; Liang, G.; Zheng, J. Structural polymorphism of human islet amyloid polypeptide (hIAPP) oligomers highlights the importance of interfacial residue interactions Biomacromolecules 2011, 12, 210-220
-
(2011)
Biomacromolecules
, vol.12
, pp. 210-220
-
-
Zhao, J.1
Yu, X.2
Liang, G.3
Zheng, J.4
-
15
-
-
77954892793
-
Polymorphism in Alzheimer Abeta amyloid organization reflects conformational selection in a rugged energy landscape
-
Miller, Y.; Ma, B.; Nussinov, R. Polymorphism in Alzheimer Abeta amyloid organization reflects conformational selection in a rugged energy landscape Chem. Rev. 2010, 110, 4820-4838
-
(2010)
Chem. Rev.
, vol.110
, pp. 4820-4838
-
-
Miller, Y.1
Ma, B.2
Nussinov, R.3
-
16
-
-
57449091884
-
Molecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils
-
Paravastu, A. K.; Leapman, R. D.; Yau, W.-M.; Tycko, R. Molecular structural basis for polymorphism in Alzheimer's beta-amyloid fibrils Proc. Natl. Acad. Sci. U.S.A. 2008, 105, 18349-18354
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 18349-18354
-
-
Paravastu, A.K.1
Leapman, R.D.2
Yau, W.-M.3
Tycko, R.4
-
17
-
-
77951975748
-
Structural conversion of neurotoxic amyloid-[beta]1?42 oligomers to fibrils
-
Ahmed, M.; Davis, J.; Aucoin, D.; Sato, T.; Ahuja, S.; Aimoto, S.; Elliott, J. I.; Van Nostrand, W. E.; Smith, S. O. Structural conversion of neurotoxic amyloid-[beta]1?42 oligomers to fibrils Nat. Struct. Mol. Biol. 2010, 17, 561-567
-
(2010)
Nat. Struct. Mol. Biol.
, vol.17
, pp. 561-567
-
-
Ahmed, M.1
Davis, J.2
Aucoin, D.3
Sato, T.4
Ahuja, S.5
Aimoto, S.6
Elliott, J.I.7
Van Nostrand, W.E.8
Smith, S.O.9
-
18
-
-
75649151677
-
Molecular modeling of two distinct triangular oligomers in amyloid beta-protein
-
Zheng, J.; Yu, X.; Wang, J.; Yang, J.-C.; Wang, Q. Molecular modeling of two distinct triangular oligomers in amyloid beta-protein J. Phys. Chem. B 2010, 114, 463-470
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 463-470
-
-
Zheng, J.1
Yu, X.2
Wang, J.3
Yang, J.-C.4
Wang, Q.5
-
19
-
-
42649088020
-
40 elongation and lateral association
-
DOI 10.2741/2980
-
Zheng, J.; Ma, B.; Chang, Y.; Nussinov, R. Molecular dynamics simulations of alzheimer's peptide A[beta]40 elongation and lateral association Front. Biosci. 2008, 13, 3919-3930 (Pubitemid 351594670)
-
(2008)
Frontiers in Bioscience
, vol.13
, Issue.10
, pp. 3919-3930
-
-
Zheng, J.1
Ma, B.2
Chang, Y.3
Nussinov, R.4
-
20
-
-
46749113483
-
Annular structures as intermediates in fibril formation of alzheimer A[beta]17-42
-
Zheng, J.; Jang, H.; Ma, B.; Nussinov, R. Annular structures as intermediates in fibril formation of alzheimer A[beta]17-42 J. Phys. Chem. B 2008, 112, 6856-6865
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 6856-6865
-
-
Zheng, J.1
Jang, H.2
Ma, B.3
Nussinov, R.4
-
21
-
-
77955187036
-
Structural determination of A[beta]25-35 micelles by molecular dynamics simulations
-
Yu, X.; Wang, Q.; Zheng, J. Structural determination of A[beta]25-35 micelles by molecular dynamics simulations Biophys. J. 2010, 99, 666-674
-
(2010)
Biophys. J.
, vol.99
, pp. 666-674
-
-
Yu, X.1
Wang, Q.2
Zheng, J.3
-
22
-
-
25844456992
-
Elongation of ordered peptide aggregate of an amyloidogenic hexapeptide NFGAIL observed in molecular dynamics simulations with explicit solvent
-
DOI 10.1021/ja050767x
-
Wu, C.; Lei, H.; Duan, Y. Elongation of ordered peptide aggregate of an amyloidogenic hexapeptide NFGAIL observed in molecular dynamics simulations with explicit solvent J. Am. Chem. Soc. 2005, 127, 13530-13537 (Pubitemid 41401204)
-
(2005)
Journal of the American Chemical Society
, vol.127
, Issue.39
, pp. 13530-13537
-
-
Wu, C.1
Lei, H.2
Duan, Y.3
-
23
-
-
0025366838
-
Islet amyloid polypeptide: Pinpointing amino acid residues linked to amyloid fibril formation
-
Westermark, P.; Engström, U.; Johnson, K. H.; Westermark, G. T.; Betsholtz, C. Islet amyloid polypeptide: pinpointing amino acid residues linked to amyloid fibril formation Proc. Natl. Acad. Sci. U.S.A. 1990, 87, 5036-5040
-
(1990)
Proc. Natl. Acad. Sci. U.S.A.
, vol.87
, pp. 5036-5040
-
-
Westermark, P.1
Engström, U.2
Johnson, K.H.3
Westermark, G.T.4
Betsholtz, C.5
-
24
-
-
50049095633
-
Atomic structure of the cross-beta spine of islet amyloid polypeptide (amylin)
-
Wiltzius, J. J. W.; Sievers, S. A.; Sawaya, M. R.; Cascio, D.; Popov, D.; Riekel, C.; Eisenberg, D. Atomic structure of the cross-beta spine of islet amyloid polypeptide (amylin) Protein Sci. 2008, 17, 1467-1474
-
(2008)
Protein Sci.
, vol.17
, pp. 1467-1474
-
-
Wiltzius, J.J.W.1
Sievers, S.A.2
Sawaya, M.R.3
Cascio, D.4
Popov, D.5
Riekel, C.6
Eisenberg, D.7
-
25
-
-
67349243781
-
Amyloid inhibitors enhance survival of cultured human islets
-
Potter, K. J.; Scrocchi, L. A.; Warnock, G. L.; Ao, Z.; Younker, M. A.; Rosenberg, L.; Lipsett, M.; Verchere, C. B.; Fraser, P. E. Amyloid inhibitors enhance survival of cultured human islets Biochim. Biophys. Acta 2009, 1790, 566-574
-
(2009)
Biochim. Biophys. Acta
, vol.1790
, pp. 566-574
-
-
Potter, K.J.1
Scrocchi, L.A.2
Warnock, G.L.3
Ao, Z.4
Younker, M.A.5
Rosenberg, L.6
Lipsett, M.7
Verchere, C.B.8
Fraser, P.E.9
-
26
-
-
0037341842
-
Identification of minimal peptide sequences in the (8-20) domain of human islet amyloid polypeptide involved in fibrillogenesis
-
DOI 10.1016/S1047-8477(02)00630-5
-
Scrocchi, L. A.; Ha, K.; Chen, Y.; Wu, L.; Wang, F.; Fraser, P. E. Identification of minimal peptide sequences in the (8?20) domain of human islet amyloid polypeptide involved in fibrillogenesis J. Struct. Biol. 2003, 141, 218-227 (Pubitemid 36332014)
-
(2003)
Journal of Structural Biology
, vol.141
, Issue.3
, pp. 218-227
-
-
Scrocchi, L.A.1
Ha, K.2
Chen, Y.3
Wu, L.4
Wang, F.5
Fraser, P.E.6
-
27
-
-
1542686314
-
Peptide sequence and amyloid formation: Molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs
-
DOI 10.1016/j.str.2004.02.002, PII S0969212604000449
-
Zanuy, D.; Porat, Y.; Gazit, E.; Nussinov, R. Peptide sequence and amyloid formation: molecular simulations and experimental study of a human islet amyloid polypeptide fragment and its analogs Structure 2004, 12, 439-455 (Pubitemid 38353065)
-
(2004)
Structure
, vol.12
, Issue.3
, pp. 439-455
-
-
Zanuy, D.1
Porat, Y.2
Gazit, E.3
Nussinov, R.4
-
28
-
-
0141956090
-
Generalized born model with a simple smoothing function
-
Im, W.; Lee, M. S.; Brooks, C. L., III Generalized born model with a simple smoothing function J. Comput. Chem. 2003, 24, 1691-1702
-
(2003)
J. Comput. Chem.
, vol.24
, pp. 1691-1702
-
-
Im, W.1
Lee, M.S.2
Iii, L.B.C.3
-
29
-
-
33751170680
-
Consensus features in amyloid fibrils: Sheet-sheet recognition via a (polar or nonpolar) zipper structure
-
Zheng, J.; Ma, B.; Nussinov, R. Consensus features in amyloid fibrils: sheet-sheet recognition via a (polar or nonpolar) zipper structure Phys. Biol. 2006, 3, P1-P4
-
(2006)
Phys. Biol.
, vol.3
-
-
Zheng, J.1
Ma, B.2
Nussinov, R.3
-
30
-
-
33744807442
-
Sequence and Structure Analysis of Parallel β Helices: Implication for Constructing Amyloid Structural Models
-
DOI 10.1016/j.str.2006.03.015, PII S0969212606002164
-
Tsai, H.-H.; Gunasekaran, K.; Nussinov, R. Sequence and structure analysis of parallel [beta] helices: implication for constructing amyloid structural models Structure 2006, 14, 1059-1072 (Pubitemid 43831659)
-
(2006)
Structure
, vol.14
, Issue.6
, pp. 1059-1072
-
-
Tsai, H.-H.1
Gunasekaran, K.2
Nussinov, R.3
-
31
-
-
0042415783
-
NAMD2: Greater scalability for parallel molecular dynamics
-
Kale, L.; Skeel, R.; Bhandarkar, M.; Brunner, R.; Gursoy, A.; Krawetz, N.; Phillips, J.; Shinozaki, A.; Varadarajan, K.; Schulten, K. NAMD2: greater scalability for parallel molecular dynamics J. Comput. Phys. 1999, 151, 283-312
-
(1999)
J. Comput. Phys.
, vol.151
, pp. 283-312
-
-
Kale, L.1
Skeel, R.2
Bhandarkar, M.3
Brunner, R.4
Gursoy, A.5
Krawetz, N.6
Phillips, J.7
Shinozaki, A.8
Varadarajan, K.9
Schulten, K.10
-
32
-
-
0041784950
-
All-atom empirical potential for molecular modeling and dynamics studies of proteins
-
MacKerell, A. D.; Bashford, D.; Bellott, M.; Dunbrack, R. L.; Evanseck, J. D.; Field, M. J.; Fischer, S.; Gao, J.; Guo, H.; Ha, S.; Joseph-McCarthy, D.; Kuchnir, L.; Kuczera, K.; Lau, F. T. K.; Mattos, C.; Michnick, S.; Ngo, T.; Nguyen, D. T.; Prodhom, B.; Reiher, W. E.; Roux, B.; Schlenkrich, M.; Smith, J. C.; Stote, R.; Straub, J.; Watanabe, M.; Wiorkiewicz-Kuczera, J.; Yin, D.; Karplus, M. All-atom empirical potential for molecular modeling and dynamics studies of proteins J. Phys. Chem. B 1998, 102, 3586-3616 (Pubitemid 128576688)
-
(1998)
Journal of Physical Chemistry B
, vol.102
, Issue.18
, pp. 3586-3616
-
-
MacKerell Jr., A.D.1
Bashford, D.2
Bellott, M.3
Dunbrack Jr., R.L.4
Evanseck, J.D.5
Field, M.J.6
Fischer, S.7
Gao, J.8
Guo, H.9
Ha, S.10
Joseph-McCarthy, D.11
Kuchnir, L.12
Kuczera, K.13
Lau, F.T.K.14
Mattos, C.15
Michnick, S.16
Ngo, T.17
Nguyen, D.T.18
Prodhom, B.19
Reiher III, W.E.20
Roux, B.21
Schlenkrich, M.22
Smith, J.C.23
Stote, R.24
Straub, J.25
Watanabe, M.26
Wiorkiewicz-Kuczera, J.27
Yin, D.28
Karplus, M.29
more..
-
33
-
-
0029878720
-
VMD - Visual molecular dynamics
-
Humphrey, W.; Dalke, A.; Schulten, K. VMD-visual molecular dynamics J. Mol. Graphics 1996, 14, 33-38
-
(1996)
J. Mol. Graphics
, vol.14
, pp. 33-38
-
-
Humphrey, W.1
Dalke, A.2
Schulten, K.3
-
34
-
-
30744433878
-
Experimental constraints on quaternary structure in Alzheimer's β-amyloid fibrils
-
DOI 10.1021/bi051952q
-
Petkova, A. T.; Yau, W. M.; Tycko, R. Experimental constraints on quaternary structure in alzheimer's beta-amyloid fibrils Biochemistry 2006, 45, 498-512 (Pubitemid 43100415)
-
(2006)
Biochemistry
, vol.45
, Issue.2
, pp. 498-512
-
-
Petkova, A.T.1
Yau, W.-M.2
Tycko, R.3
-
35
-
-
33750826280
-
General structural motifs of amyloid protofilaments
-
DOI 10.1073/pnas.0607815103
-
Ferguson, N.; Becker, J.; Tidow, H.; Tremmel, S.; Sharpe, T. D.; Krause, G.; Flinders, J.; Petrovich, M.; Berriman, J.; Oschkinat, H.; Fersht, A. R. General structural motifs of amyloid protofilaments Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 16248-16253 (Pubitemid 44715182)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.44
, pp. 16248-16253
-
-
Ferguson, N.1
Becker, J.2
Tidow, H.3
Tremmel, S.4
Sharpe, T.D.5
Krause, G.6
Flinders, J.7
Petrovich, M.8
Berriman, J.9
Oschkinat, H.10
Fersht, A.R.11
-
36
-
-
39749090561
-
2-microglobulin amyloid fragment organization and morphology and its comparison to Aβ suggests that amyloid aggregation pathways are sequence specific
-
DOI 10.1021/bi7019194
-
Zheng, J.; Jang, H.; Nussinov, R. [beta]2-microglobulin amyloid fragment organization and morphology and its comparison to A-[beta] suggests that amyloid aggregation pathways are sequence-specific Biochemistry 2008, 47, 2497-2509 (Pubitemid 351304555)
-
(2008)
Biochemistry
, vol.47
, Issue.8
, pp. 2497-2509
-
-
Zheng, J.1
Jang, H.2
Nussinov, R.3
-
37
-
-
22144448838
-
The role of Phe in the formation of well-ordered oligomers of amyloidogenic hexapeptide (NFGAIL) observed in molecular dynamics simulations with explicit solvent
-
DOI 10.1529/biophysj.104.055574
-
Wu, C.; Lei, H.; Duan, Y. The role of Phe in the formation of well-ordered oligomers of amyloidogenic hexapeptide (NFGAIL) observed in molecular dynamics simulations with explicit solvent Biophys. J. 2005, 88, 2897-2906 (Pubitemid 40976154)
-
(2005)
Biophysical Journal
, vol.88
, Issue.4
, pp. 2897-2906
-
-
Wu, C.1
Lei, H.2
Duan, Y.3
-
38
-
-
0038274079
-
The sequence dependence of fiber organization. A comparative molecular dynamics study of the islet amyloid polypeptide segments 22-27 and 22-29
-
DOI 10.1016/S0022-2836(03)00491-1
-
Zanuy, D.; Nussinov, R. The sequence dependence of fiber organization. a comparative molecular dynamics study of the islet amyloid polypeptide segments 22-27 and 22-29 J. Mol. Biol. 2003, 329, 565-584 (Pubitemid 36593212)
-
(2003)
Journal of Molecular Biology
, vol.329
, Issue.3
, pp. 565-584
-
-
Zanuy, D.1
Nussinov, R.2
-
40
-
-
70449584579
-
2D IR provides evidence for mobile water molecules in β-amyloid fibrils
-
Kim, Y. S.; Liu, L.; Axelsen, P. H.; Hochstrasser, R. M. 2D IR provides evidence for mobile water molecules in β-amyloid fibrils Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 17751-17756
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 17751-17756
-
-
Kim, Y.S.1
Liu, L.2
Axelsen, P.H.3
Hochstrasser, R.M.4
-
41
-
-
50249168222
-
Role of water in mediating the assembly of Alzheimer amyloid-beta Abeta16-22 protofilaments
-
Krone, M. G.; Hua, L.; Soto, P.; Zhou, R.; Berne, B. J.; Shea, J.-E. Role of water in mediating the assembly of Alzheimer amyloid-beta Abeta16-22 protofilaments J. Am. Chem. Soc. 2008, 130, 11066-11072
-
(2008)
J. Am. Chem. Soc.
, vol.130
, pp. 11066-11072
-
-
Krone, M.G.1
Hua, L.2
Soto, P.3
Zhou, R.4
Berne, B.J.5
Shea, J.-E.6
-
42
-
-
78650750083
-
Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires
-
Reddy, G.; Straub, J. E.; Thirumalai, D. Dry amyloid fibril assembly in a yeast prion peptide is mediated by long-lived structures containing water wires Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 21459-21464
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 21459-21464
-
-
Reddy, G.1
Straub, J.E.2
Thirumalai, D.3
-
43
-
-
0031170857
-
Polymorphic fibrillar assembly of human amylin
-
DOI 10.1006/jsbi.1997.3858
-
Goldsbury, C. S.; Cooper, G. J. S.; Goldie, K. N.; Muller, S. A.; Saafi, E. L.; Gruijters, W. T. M.; Misur, M. P.; Engel, A.; Aebi, U.; Kistler, J. Polymorphic fibrillar assembly of human amylin J. Struct. Biol. 1997, 119, 17-27 (Pubitemid 27294718)
-
(1997)
Journal of Structural Biology
, vol.119
, Issue.1
, pp. 17-27
-
-
Goldsbury, C.S.1
Cooper, G.J.S.2
Goldie, K.N.3
Muller, S.A.4
Saafi, E.L.5
Gruijters, W.T.M.6
Misur, M.P.7
Engel, A.8
Aebi, U.9
Kistler, J.10
-
44
-
-
34249290108
-
Atomic structures of amyloid cross-β spines reveal varied steric zippers
-
DOI 10.1038/nature05695, PII NATURE05695
-
Sawaya, M. R.; Sambashivan, S.; Nelson, R.; Ivanova, M. I.; Sievers, S. A.; Apostol, M. I.; Thompson, M. J.; Balbirnie, M.; Wiltzius, J. J. W.; McFarlane, H. T.; Madsen, A. O.; Riekel, C.; Eisenberg, D. Atomic structures of amyloid cross-[beta] spines reveal varied steric zippers Nature 2007, 447, 453-457 (Pubitemid 46816731)
-
(2007)
Nature
, vol.447
, Issue.7143
, pp. 453-457
-
-
Sawaya, M.R.1
Sambashivan, S.2
Nelson, R.3
Ivanova, M.I.4
Sievers, S.A.5
Apostol, M.I.6
Thompson, M.J.7
Balbirnie, M.8
Wiltzius, J.J.W.9
McFarlane, H.T.10
Madsen, A.O.11
Riekel, C.12
Eisenberg, D.13
-
45
-
-
65149095089
-
Assembly dynamics of two-beta sheets revealed by molecular dynamics simulations
-
Xu, W.; Ping, J.; Li, W.; Mu, Y. Assembly dynamics of two-beta sheets revealed by molecular dynamics simulations J. Chem. Phys. 2009, 130, 164709
-
(2009)
J. Chem. Phys.
, vol.130
, pp. 164709
-
-
Xu, W.1
Ping, J.2
Li, W.3
Mu, Y.4
-
46
-
-
79952258282
-
The unique alzheimer's β-amyloid triangular fibril has a cavity along the fibril axis under physiological conditions
-
Miller, Y.; Ma, B.; Nussinov, R. The unique alzheimer's β-amyloid triangular fibril has a cavity along the fibril axis under physiological conditions J. Am. Chem. Soc. 2011, 133, 2742-2748
-
(2011)
J. Am. Chem. Soc.
, vol.133
, pp. 2742-2748
-
-
Miller, Y.1
Ma, B.2
Nussinov, R.3
-
47
-
-
33748579277
-
Structure by design: from single proteins and their building blocks to nanostructures
-
DOI 10.1016/j.tibtech.2006.08.004, PII S0167779906002083
-
Tsai, C.-J.; Zheng, J.; Aleman, C.; Nussinov, R. Structure by design: from single proteins and their building blocks to nanostructures Trends Biotechnol. 2006, 24, 449-454 (Pubitemid 44374783)
-
(2006)
Trends in Biotechnology
, vol.24
, Issue.10
, pp. 449-454
-
-
Tsai, C.-J.1
Zheng, J.2
Aleman, C.3
Nussinov, R.4
-
48
-
-
34249870395
-
Principles of nanostructure design with protein building blocks
-
DOI 10.1002/prot.21413
-
Tsai, C.-J.; Zheng, J.; Zanuy, D.; Haspel, N.; Wolfson, H.; Aleman, C.; Nussinov, R. Principles of nanostructure design with protein building blocks Proteins: Struct., Funct., Bioinf. 2007, 68, 1-12 (Pubitemid 46871576)
-
(2007)
Proteins: Structure, Function and Genetics
, vol.68
, Issue.1
, pp. 1-12
-
-
Tsai, C.-J.1
Zheng, J.2
Zanuy, D.3
Haspel, N.4
Wolfson, H.5
Aleman, C.6
Nussinov, R.7
-
49
-
-
1842425710
-
Human amylin oligomer growth and fibril elongation define two distinct phases in amyloid formation
-
DOI 10.1074/jbc.M312452200
-
Green, J. D.; Goldsbury, C.; Kistler, J.; Cooper, G. J. S.; Aebi, U. Human amylin oligomer growth and fibril elongation define two distinct phases in amyloid formation J. Biol. Chem. 2004, 279, 12206-12212 (Pubitemid 38445785)
-
(2004)
Journal of Biological Chemistry
, vol.279
, Issue.13
, pp. 12206-12212
-
-
Green, J.D.1
Goldsbury, C.2
Kistler, J.3
Cooper, G.J.S.4
Aebi, U.5
-
50
-
-
0347284249
-
Structural characterisation of islet amyloid polypeptide fibrils
-
DOI 10.1016/j.jmb.2003.11.048
-
Makin, S. O.; Serpell, L. C. Structural characterisation of islet amyloid polypeptide fibrils J. Mol. Biol. 2004, 335, 1279-1288 (Pubitemid 38077245)
-
(2004)
Journal of Molecular Biology
, vol.335
, Issue.5
, pp. 1279-1288
-
-
Makin, O.S.1
Serpell, L.C.2
-
51
-
-
61949248657
-
Effect of dehydration on the aggregation kinetics of two amyloid peptides
-
Mukherjee, S.; Chowdhury, P.; Gai, F. Effect of dehydration on the aggregation kinetics of two amyloid peptides J. Phys. Chem. B 2009, 113, 531-535
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 531-535
-
-
Mukherjee, S.1
Chowdhury, P.2
Gai, F.3
-
52
-
-
63249103989
-
Annular protofibrils are a structurally and functionally distinct type of amyloid oligomer
-
Kayed, R.; Pensalfini, A.; Margol, L.; Sokolov, Y.; Sarsoza, F.; Head, E.; Hall, J.; Glabe, C. Annular protofibrils are a structurally and functionally distinct type of amyloid oligomer J. Biol. Chem. 2009, 284, 4230-4237
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 4230-4237
-
-
Kayed, R.1
Pensalfini, A.2
Margol, L.3
Sokolov, Y.4
Sarsoza, F.5
Head, E.6
Hall, J.7
Glabe, C.8
-
53
-
-
43049131763
-
A[beta]-globulomers are formed independently of the fibril pathway
-
Gellermann, G. P.; Byrnes, H.; Striebinger, A.; Ullrich, K.; Mueller, R.; Hillen, H.; Barghorn, S. A[beta]-globulomers are formed independently of the fibril pathway Neurobiol. Dis. 2008, 30, 212-220
-
(2008)
Neurobiol. Dis.
, vol.30
, pp. 212-220
-
-
Gellermann, G.P.1
Byrnes, H.2
Striebinger, A.3
Ullrich, K.4
Mueller, R.5
Hillen, H.6
Barghorn, S.7
-
54
-
-
66149140617
-
Seeded growth of beta-amyloid fibrils from Alzheimer's brain-derived fibrils produces a distinct fibril structure
-
Paravastu, A. K.; Qahwash, I.; Leapman, R. D.; Meredith, S. C.; Tycko, R. Seeded growth of beta-amyloid fibrils from Alzheimer's brain-derived fibrils produces a distinct fibril structure Proc. Natl. Acad. Sci. U.S.A. 2009, 106, 7443-7448
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 7443-7448
-
-
Paravastu, A.K.1
Qahwash, I.2
Leapman, R.D.3
Meredith, S.C.4
Tycko, R.5
-
55
-
-
76149118090
-
Solution Structures of Rat Amylin Peptide: Simulation, Theory, and Experiment
-
Reddy, A. S.; Wang, L.; Lin, Y.-S.; Ling, Y.; Chopra, M.; Zanni, M. T.; Skinner, J. L.; De Pablo, J. J. Solution Structures of Rat Amylin Peptide: Simulation, Theory, and Experiment Biophys. J. 2010, 98, 443-451
-
(2010)
Biophys. J.
, vol.98
, pp. 443-451
-
-
Reddy, A.S.1
Wang, L.2
Lin, Y.-S.3
Ling, Y.4
Chopra, M.5
Zanni, M.T.6
Skinner, J.L.7
De Pablo, J.J.8
-
56
-
-
33845334180
-
2- microglobulin fragment probed by solid-state NMR
-
DOI 10.1073/pnas.0607180103
-
Iwata, K.; Fujiwara, T.; Matsuki, Y.; Akutsu, H.; Takahashi, S.; Naiki, H.; Goto, Y. 3D structure of amyloid protofilaments of beta2-microglobulin fragment probed by solid-state NMR Proc. Natl. Acad. Sci. U.S.A. 2006, 103, 18119-18124 (Pubitemid 44871622)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.48
, pp. 18119-18124
-
-
Iwata, K.1
Fujiwara, T.2
Matsuki, Y.3
Akutsu, H.4
Takahashi, S.5
Naiki, H.6
Goto, Y.7
-
57
-
-
73249115986
-
Human islet amyloid polypeptide monomers form ordered β-hairpins: A possible direct amyloidogenic precursor
-
Dupuis, N. F.; Wu, C.; Shea, J.-E.; Bowers, M. T. Human islet amyloid polypeptide monomers form ordered β-hairpins: a possible direct amyloidogenic precursor J. Am. Chem. Soc. 2009, 131, 18283-18292
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 18283-18292
-
-
Dupuis, N.F.1
Wu, C.2
Shea, J.-E.3
Bowers, M.T.4
-
58
-
-
77958454277
-
Stable and metastable states of human amylin in solution
-
Reddy, A. S.; Wang, L.; Singh, S.; Ling, Y. L.; Buchanan, L.; Zanni, M. T.; Skinner, J. L.; de Pablo, J. J. Stable and metastable states of human amylin in solution Biophys. J. 2010, 99, 2208-2216
-
(2010)
Biophys. J.
, vol.99
, pp. 2208-2216
-
-
Reddy, A.S.1
Wang, L.2
Singh, S.3
Ling, Y.L.4
Buchanan, L.5
Zanni, M.T.6
Skinner, J.L.7
De Pablo, J.J.8
-
59
-
-
68949108322
-
Sequence and crowding effects in the aggregation of a 10-residue fragment derived from islet amyloid polypeptide
-
Rivera, E.; Straub, J.; Thirumalai, D. Sequence and crowding effects in the aggregation of a 10-residue fragment derived from islet amyloid polypeptide Biophys. J. 2009, 96, 4552-4560
-
(2009)
Biophys. J.
, vol.96
, pp. 4552-4560
-
-
Rivera, E.1
Straub, J.2
Thirumalai, D.3
-
60
-
-
77952682789
-
Effect of the disulfide bond on the monomeric structure of human amylin studied by combined Hamiltonian and temperature replica exchange molecular dynamics simulations
-
Laghaei, R.; Mousseau, N.; Wei, G. Effect of the disulfide bond on the monomeric structure of human amylin studied by combined Hamiltonian and temperature replica exchange molecular dynamics simulations J. Phys. Chem. B 2010, 114, 7071-7077
-
(2010)
J. Phys. Chem. B
, vol.114
, pp. 7071-7077
-
-
Laghaei, R.1
Mousseau, N.2
Wei, G.3
-
61
-
-
34848929022
-
Structural reorganisation and potential toxicity of oligomeric species formed during the assembly of amyloid fibrils
-
Cheon, M.; Chang, I.; Mohanty, S.; Luheshi, L. M.; Dobson, C. M.; Vendruscolo, M.; Favrin, G. Structural reorganisation and potential toxicity of oligomeric species formed during the assembly of amyloid fibrils PLoS Comput. Biol. 2007, 3, e173
-
(2007)
PLoS Comput. Biol.
, vol.3
, pp. 173
-
-
Cheon, M.1
Chang, I.2
Mohanty, S.3
Luheshi, L.M.4
Dobson, C.M.5
Vendruscolo, M.6
Favrin, G.7
-
62
-
-
57149102288
-
A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates
-
Auer, S.; Meersman, F.; Dobson, C. M.; Vendruscolo, M. A generic mechanism of emergence of amyloid protofilaments from disordered oligomeric aggregates PLoS Comput. Biol. 2008, 4, e1000222
-
(2008)
PLoS Comput. Biol.
, vol.4
, pp. 1000222
-
-
Auer, S.1
Meersman, F.2
Dobson, C.M.3
Vendruscolo, M.4
|