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Volumn 6674 LNBI, Issue , 2011, Pages 392-403

Accurate estimation of gene expression levels from DGE sequencing data

Author keywords

[No Author keywords available]

Indexed keywords

ACCURATE ESTIMATION; ALTERNATIVE SPLICING; DIGESTION TIME; ESTIMATION ALGORITHM; ESTIMATION METHODS; EXPECTATION-MAXIMIZATION ALGORITHMS; EXPERIMENTAL PARAMETERS; EXPRESSION LEVELS; GENE EXPRESSION LEVELS; ISOFORMS; OPEN SOURCES; PROTOCOL PARAMETERS; SEQUENCING ERRORS; SIMULATION STUDIES; TRANSCRIPTOMES;

EID: 79955820367     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-21260-4_37     Document Type: Conference Paper
Times cited : (3)

References (10)
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    • Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
    • Bullard, J., Purdom, E., Hansen, K., Dudoit, S.: Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 11(1), 94 (2010)
    • (2010) BMC Bioinformatics , vol.11 , Issue.1 , pp. 94
    • Bullard, J.1    Purdom, E.2    Hansen, K.3    Dudoit, S.4
  • 3
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead, B., Trapnell, C., Pop, M., Salzberg, S.: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10(3), R25 (2009)
    • (2009) Genome Biology , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.4
  • 4
    • 77949507153 scopus 로고    scopus 로고
    • RNA-Seq gene expression estimation with read mapping uncertainty
    • Li, B., Ruotti, V., Stewart, R.M., Thomson, J.A., Dewey, C.N.: RNA-Seq gene expression estimation with read mapping uncertainty. Bioinformatics 26(4), 493-500 (2010)
    • (2010) Bioinformatics , vol.26 , Issue.4 , pp. 493-500
    • Li, B.1    Ruotti, V.2    Stewart, R.M.3    Thomson, J.A.4    Dewey, C.N.5
  • 5
    • 33748491517 scopus 로고    scopus 로고
    • The Microarray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
    • MAQC Consortium
    • MAQC Consortium: The Microarray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nature Biotechnology 24(9), 1151-1161 (2006)
    • (2006) Nature Biotechnology , vol.24 , Issue.9 , pp. 1151-1161
  • 6
    • 78049485688 scopus 로고    scopus 로고
    • Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data
    • Moulton, V., Singh, M. (eds.) WABI 2010. Springer, Heidelberg
    • Nicolae, M., Mangul, S., Mǎndoiu, I., Zelikovsky, A.: Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data. In: Moulton, V., Singh, M. (eds.) WABI 2010. LNCS, vol. 6293, pp. 202-214. Springer, Heidelberg (2010)
    • (2010) LNCS , vol.6293 , pp. 202-214
    • Nicolae, M.1    Mangul, S.2    Mǎndoiu, I.3    Zelikovsky, A.4
  • 10
    • 77649132384 scopus 로고    scopus 로고
    • Bias correction and Bayesian analysis of aggregate counts in SAGE libraries
    • Zaretzki, R., Gilchrist, M., Briggs, W., Armagan, A.: Bias correction and Bayesian analysis of aggregate counts in SAGE libraries. BMC Bioinformatics 11(1), 72 (2010)
    • (2010) BMC Bioinformatics , vol.11 , Issue.1 , pp. 72
    • Zaretzki, R.1    Gilchrist, M.2    Briggs, W.3    Armagan, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.