-
1
-
-
74049148179
-
3′ tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer
-
Asmann, Y., Klee, E.W., Thompson, E.A., Perez, E., Middha, S., Oberg, A., Therneau, T., Smith, D., Poland, G., Wieben, E., Kocher, J.-P.: 3′ tag digital gene expression profiling of human brain and universal reference RNA using Illumina Genome Analyzer. BMC Genomics 10(1), 531 (2009)
-
(2009)
BMC Genomics
, vol.10
, Issue.1
, pp. 531
-
-
Asmann, Y.1
Klee, E.W.2
Thompson, E.A.3
Perez, E.4
Middha, S.5
Oberg, A.6
Therneau, T.7
Smith, D.8
Poland, G.9
Wieben, E.10
Kocher, J.-P.11
-
2
-
-
77949481052
-
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
-
Bullard, J., Purdom, E., Hansen, K., Dudoit, S.: Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 11(1), 94 (2010)
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
, pp. 94
-
-
Bullard, J.1
Purdom, E.2
Hansen, K.3
Dudoit, S.4
-
3
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
Langmead, B., Trapnell, C., Pop, M., Salzberg, S.: Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biology 10(3), R25 (2009)
-
(2009)
Genome Biology
, vol.10
, Issue.3
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
4
-
-
77949507153
-
RNA-Seq gene expression estimation with read mapping uncertainty
-
Li, B., Ruotti, V., Stewart, R.M., Thomson, J.A., Dewey, C.N.: RNA-Seq gene expression estimation with read mapping uncertainty. Bioinformatics 26(4), 493-500 (2010)
-
(2010)
Bioinformatics
, vol.26
, Issue.4
, pp. 493-500
-
-
Li, B.1
Ruotti, V.2
Stewart, R.M.3
Thomson, J.A.4
Dewey, C.N.5
-
5
-
-
33748491517
-
The Microarray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements
-
MAQC Consortium
-
MAQC Consortium: The Microarray Quality Control (MAQC) project shows inter- and intraplatform reproducibility of gene expression measurements. Nature Biotechnology 24(9), 1151-1161 (2006)
-
(2006)
Nature Biotechnology
, vol.24
, Issue.9
, pp. 1151-1161
-
-
-
6
-
-
78049485688
-
Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data
-
Moulton, V., Singh, M. (eds.) WABI 2010. Springer, Heidelberg
-
Nicolae, M., Mangul, S., Mǎndoiu, I., Zelikovsky, A.: Estimation of Alternative Splicing isoform Frequencies from RNA-Seq Data. In: Moulton, V., Singh, M. (eds.) WABI 2010. LNCS, vol. 6293, pp. 202-214. Springer, Heidelberg (2010)
-
(2010)
LNCS
, vol.6293
, pp. 202-214
-
-
Nicolae, M.1
Mangul, S.2
Mǎndoiu, I.3
Zelikovsky, A.4
-
7
-
-
57149085481
-
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
-
't Hoen, P.A., Ariyurek, Y., Thygesen, H.H., Vreugdenhil, E., Vossen, R.H., de Menezes, R.X., Boer, J.M., van Ommen, G.-J.J., den Dunnen, J.T.: Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms. Nucleic Acids Research 36(21), e141 (2008)
-
(2008)
Nucleic Acids Research
, vol.36
, Issue.21
-
-
'T Hoen, P.A.1
Ariyurek, Y.2
Thygesen, H.H.3
Vreugdenhil, E.4
Vossen, R.H.5
De Menezes, R.X.6
Boer, J.M.7
Van Ommen, G.-J.J.8
Den Dunnen, J.T.9
-
8
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C.,Williams, B.A., Pertea, G., Mortazavi, A., Kwan, G., van Baren, M.J., Salzberg, S.L., Wold, B.J., Pachter, L.: Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nature Biotechnology 28(5), 511-515 (2010)
-
(2010)
Nature Biotechnology
, vol.28
, Issue.5
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
Van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
9
-
-
78650058951
-
Gene expression profiling of human breast tissue samples using SAGE-Seq
-
Wu, Z.J., Meyer, C.A., Choudhury, S., Shipitsin, M., Maruyama, R., Bessarabova, M., Nikolskaya, T., Sukumar, S., Schwartzman, A., Liu, J.S., Polyak, K., Liu, X.S.: Gene expression profiling of human breast tissue samples using SAGE-Seq. Genome Research 20(12), 1730-1739 (2010)
-
(2010)
Genome Research
, vol.20
, Issue.12
, pp. 1730-1739
-
-
Wu, Z.J.1
Meyer, C.A.2
Choudhury, S.3
Shipitsin, M.4
Maruyama, R.5
Bessarabova, M.6
Nikolskaya, T.7
Sukumar, S.8
Schwartzman, A.9
Liu, J.S.10
Polyak, K.11
Liu, X.S.12
-
10
-
-
77649132384
-
Bias correction and Bayesian analysis of aggregate counts in SAGE libraries
-
Zaretzki, R., Gilchrist, M., Briggs, W., Armagan, A.: Bias correction and Bayesian analysis of aggregate counts in SAGE libraries. BMC Bioinformatics 11(1), 72 (2010)
-
(2010)
BMC Bioinformatics
, vol.11
, Issue.1
, pp. 72
-
-
Zaretzki, R.1
Gilchrist, M.2
Briggs, W.3
Armagan, A.4
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