-
1
-
-
0025879424
-
Complementary DNA sequencing: Expressed sequence tags and human genome project
-
Adams MD, Kelley JM, Gocayne JD, Dubnick M, Polymeropoulos MH, Xiao H, Merril CR, Wu A, Olde B, Moreno RF, et al. 1991. Complementary DNA sequencing: Expressed sequence tags and human genome project. Science 252: 1651-1656.
-
(1991)
Science
, vol.252
, pp. 1651-1656
-
-
Adams, M.D.1
Kelley, J.M.2
Gocayne, J.D.3
Dubnick, M.4
Polymeropoulos, M.H.5
Xiao, H.6
Merril, C.R.7
Wu, A.8
Olde, B.9
Moreno, R.F.10
-
2
-
-
0043009767
-
Differential expression in SAGE: Accounting for normal between-library variation
-
Baggerly KA, Deng L, Morris JS, Aldaz CM. 2003. Differential expression in SAGE: Accounting for normal between-library variation. Bioinformatics 19: 1477-1483
-
(2003)
Bioinformatics
, vol.19
, pp. 1477-1483
-
-
Baggerly, K.A.1
Deng, L.2
Morris, J.S.3
Aldaz, C.M.4
-
3
-
-
13244298225
-
Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates
-
doi: 10.1186/1471-2105-5-144
-
Baggerly KA, Deng L, Morris JS, Aldaz CM. 2004. Overdispersed logistic regression for SAGE: Modelling multiple groups and covariates. BMC Bioinformatics 5: 144. doi: 10.1186/1471-2105-5-144.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 144
-
-
Baggerly, K.A.1
Deng, L.2
Morris, J.S.3
Aldaz, C.M.4
-
4
-
-
52949122883
-
Cell type-specific DNA methylation patterns in the human breast
-
Bloushtain-Qimron N, Yao J, Snyder EL, Shipitsin M, Campbell LL, Mani SA, Hu M, Chen H, Ustyansky V, Antosiewicz JE, et al. 2008. Cell type-specific DNA methylation patterns in the human breast. Proc Natl Acad Sci 105: 14076-14081.
-
(2008)
Proc Natl Acad Sci
, vol.105
, pp. 14076-14081
-
-
Bloushtain-Qimron, N.1
Yao, J.2
Snyder, E.L.3
Shipitsin, M.4
Campbell, L.L.5
Mani, S.A.6
Hu, M.7
Chen, H.8
Ustyansky, V.9
Antosiewicz, J.E.10
-
5
-
-
3142555412
-
Clustering analysis of SAGE data using a Poisson approach
-
doi: 10.1186/gb-2004-5-7-51
-
Cai L, Huang H, Blackshaw S, Liu JS, Cepko C, Wong WH. 2004. Clustering analysis of SAGE data using a Poisson approach. Genome Biol 5: R51. doi: 10.1186/gb-2004-5-7-51.
-
(2004)
Genome Biol
, vol.5
-
-
Cai, L.1
Huang, H.2
Blackshaw, S.3
Liu, J.S.4
Cepko, C.5
Wong, W.H.6
-
6
-
-
62549108159
-
ABC transporters, drug resistance, and cancer stem cells
-
Dean M. 2009. ABC transporters, drug resistance, and cancer stem cells. J Mammary Gland Biol Neoplasia 14: 3-9.
-
(2009)
J Mammary Gland Biol Neoplasia
, vol.14
, pp. 3-9
-
-
Dean, M.1
-
7
-
-
0001735517
-
On the mathematical foundations of theoretical statistics
-
Fisher RA. 1922. On the mathematical foundations of theoretical statistics. Philos Trans R Soc Lond 222: 309-368.
-
(1922)
Philos Trans R Soc Lond
, vol.222
, pp. 309-368
-
-
Fisher, R.A.1
-
8
-
-
84953486351
-
Good-Turing frequency estimation without tears
-
Gale WA, Sampson G. 1995. Good-Turing frequency estimation without tears. J Quant Ling 2: 217-237.
-
(1995)
J Quant Ling
, vol.2
, pp. 217-237
-
-
Gale, W.A.1
Sampson, G.2
-
9
-
-
0000803388
-
The population frequencies of species and the estimation of population parameters
-
Good IJ. 1953. The population frequencies of species and the estimation of population parameters. Biometrika 40: 237-264.
-
(1953)
Biometrika
, vol.40
, pp. 237-264
-
-
Good, I.J.1
-
10
-
-
57849105533
-
The antisense transcriptomes of human cells
-
He Y, Vogelstein B, Velculescu VE, Papadopoulos N, Kinzler KW. 2008. The antisense transcriptomes of human cells. Science 322: 1855-1857.
-
(2008)
Science
, vol.322
, pp. 1855-1857
-
-
He, Y.1
Vogelstein, B.2
Velculescu, V.E.3
Papadopoulos, N.4
Kinzler, K.W.5
-
11
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber W, von Heydebreck A, Sültmann H, Poustka A, Vingron M. 2002. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18: S96-S104.
-
(2002)
Bioinformatics
, vol.18
-
-
Huber, W.1
Von Heydebreck, A.2
Sültmann, H.3
Poustka, A.4
Vingron, M.5
-
12
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, Scherf U, Speed TP. 2003. Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
Scherf, U.6
Speed, T.P.7
-
13
-
-
53749083993
-
SeqMap: Mapping massive amount of oligonucleotides to the genome
-
Jiang H, Wong WH. 2008. SeqMap: Mapping massive amount of oligonucleotides to the genome. Bioinformatics 24: 2395-2396.
-
(2008)
Bioinformatics
, vol.24
, pp. 2395-2396
-
-
Jiang, H.1
Wong, W.H.2
-
14
-
-
33747587864
-
Model-based analysis of tiling-arrays for ChIP-chip
-
Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. 2006. Model-based analysis of tiling-arrays for ChIP-chip. Proc Natl Acad Sci 103: 12457-12462.
-
(2006)
Proc Natl Acad Sci
, vol.103
, pp. 12457-12462
-
-
Johnson, W.E.1
Li, W.2
Meyer, C.A.3
Gottardo, R.4
Carroll, J.S.5
Brown, M.6
Liu, X.S.7
-
15
-
-
34250159524
-
Genome-wide mapping of in vivo protein-DNA interactions
-
Johnson DS, Mortazavi A, Myers RM, Wold B. 2007. Genome-wide mapping of in vivo protein-DNA interactions. Science 316: 1497-1502.
-
(2007)
Science
, vol.316
, pp. 1497-1502
-
-
Johnson, D.S.1
Mortazavi, A.2
Myers, R.M.3
Wold, B.4
-
16
-
-
57449100870
-
Design and analysis of ChIP-seq experiments for DNA-binding proteins
-
Kharchenko PV, Tolstorukov MY, Park PJ. 2008. Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat Biotechnol 26: 1351-1359.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1351-1359
-
-
Kharchenko, P.V.1
Tolstorukov, M.Y.2
Park, P.J.3
-
17
-
-
33644662506
-
Overexpression of Gprotein-coupled receptors in cancer cells: Involvement in tumor progression
-
Li S, Huang S, Peng SB. 2005. Overexpression of Gprotein-coupled receptors in cancer cells: Involvement in tumor progression. Int J Oncol 27: 1329-1339.
-
(2005)
Int J Oncol
, vol.27
, pp. 1329-1339
-
-
Li, S.1
Huang, S.2
Peng, S.B.3
-
18
-
-
25444469952
-
Identifying differential expression in multiple SAGE libraries: An overdispersed log-linear model approach
-
doi: 10.1186/1471-2105-6-165
-
Lu J, Tomfohr JK, Kepler TB. 2005. Identifying differential expression in multiple SAGE libraries: An overdispersed log-linear model approach. BMC Bioinformatics 6: 165. doi: 10.1186/1471-2105-6-165.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 165
-
-
Lu, J.1
Tomfohr, J.K.2
Kepler, T.B.3
-
19
-
-
1942453481
-
The commonness, and rarity, of species
-
Wiley-Blackwell, Hoboken, NJ
-
Magurran AE. 2003. The commonness, and rarity, of species. In Measuring biological diveristy, p. 18, Wiley-Blackwell, Hoboken, NJ.
-
(2003)
Measuring Biological Diveristy
, pp. 18
-
-
Magurran, A.E.1
-
20
-
-
70349636603
-
Next-generation tag sequencing for cancer gene expression profiling
-
Morrissy AS, Morin RD, Delaney A, Zeng T, McDonald H, Jones S, Zhao Y, Hirst M, Marra MA. 2009. Next-generation tag sequencing for cancer gene expression profiling. Genome Res 19: 1825-1835.
-
(2009)
Genome Res
, vol.19
, pp. 1825-1835
-
-
Morrissy, A.S.1
Morin, R.D.2
Delaney, A.3
Zeng, T.4
McDonald, H.5
Jones, S.6
Zhao, Y.7
Hirst, M.8
Marra, M.A.9
-
21
-
-
56449114856
-
Genome-wide functional synergy between amplified and mutated genes in human breast cancer
-
Nikolsky Y, Sviridov E, Yao J, Dosymbekov D, Ustyansky V, Kaznacheev V, Dezso Z, Mulvey L, Macconaill LE, Winckler W, et al. 2008. Genome-wide functional synergy between amplified and mutated genes in human breast cancer. Cancer Res 68: 9532-9540.
-
(2008)
Cancer Res
, vol.68
, pp. 9532-9540
-
-
Nikolsky, Y.1
Sviridov, E.2
Yao, J.3
Dosymbekov, D.4
Ustyansky, V.5
Kaznacheev, V.6
Dezso, Z.7
Mulvey, L.8
Macconaill, L.E.9
Winckler, W.10
-
22
-
-
70349576321
-
Functional analysis of OMICs data and small molecule compounds in an integrated "knowledge-based" platform
-
Nikolsky Y, Kirillov E, Zuev R, Rakhmatulin E, Nikolskaya T. 2009. Functional analysis of OMICs data and small molecule compounds in an integrated "knowledge-based" platform. Methods Mol Biol 563: 177-196.
-
(2009)
Methods Mol Biol
, vol.563
, pp. 177-196
-
-
Nikolsky, Y.1
Kirillov, E.2
Zuev, R.3
Rakhmatulin, E.4
Nikolskaya, T.5
-
23
-
-
0142084741
-
Always Good Turing: Asymptotically optimal probability estimation
-
Orlitsky A, Santhanam NP, Zhang J. 2003. Always Good Turing: Asymptotically optimal probability estimation. Science 302: 427-431.
-
(2003)
Science
, vol.302
, pp. 427-431
-
-
Orlitsky, A.1
Santhanam, N.P.2
Zhang, J.3
-
24
-
-
0035367507
-
Gene discovery using the serial analysis of gene expression technique: Implications for cancer research
-
Polyak K, Riggins GJ. 2001. Gene discovery using the serial analysis of gene expression technique: Implications for cancer research. J Clin Oncol 19: 2948-2958.
-
(2001)
J Clin Oncol
, vol.19
, pp. 2948-2958
-
-
Polyak, K.1
Riggins, G.J.2
-
26
-
-
36448981743
-
Moderated statistical tests for assessing differences in tag abundance
-
Robinson MD, Smyth GK. 2007. Moderated statistical tests for assessing differences in tag abundance. Bioinformatics 23: 2881-2887.
-
(2007)
Bioinformatics
, vol.23
, pp. 2881-2887
-
-
Robinson, M.D.1
Smyth, G.K.2
-
27
-
-
0028806048
-
Quantitative monitoring of gene expression patterns with a complementary DNA microarray
-
Schena M, Shalon D, Davis RW, Brown PO. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
28
-
-
53649106195
-
Next-generation DNA sequencing
-
Shendure J, Ji H. 2008. Next-generation DNA sequencing. Nat Biotechnol 26: 1135-1145.
-
(2008)
Nat Biotechnol
, vol.26
, pp. 1135-1145
-
-
Shendure, J.1
Ji, H.2
-
29
-
-
33847419142
-
Molecular definition of breast tumor heterogeneity
-
Shipitsin M, Campbell LL, Argani P, Weremowicz S, Bloushtain-Qimron N, Yao J, Nikolskaya T, Serebryiskaya T, Beroukhim R, Hu M, et al. 2007. Molecular definition of breast tumor heterogeneity. Cancer Cell 11: 259-273.
-
(2007)
Cancer Cell
, vol.11
, pp. 259-273
-
-
Shipitsin, M.1
Campbell, L.L.2
Argani, P.3
Weremowicz, S.4
Bloushtain-Qimron, N.5
Yao, J.6
Nikolskaya, T.7
Serebryiskaya, T.8
Beroukhim, R.9
Hu, M.10
-
30
-
-
33344464667
-
Measurement of diversity
-
Simpson EH. 1949. Measurement of diversity. Nature 163: 688.
-
(1949)
Nature
, vol.163
, pp. 688
-
-
Simpson, E.H.1
-
31
-
-
35748962754
-
Model-based analysis of two-color arrays (MA2C)
-
doi: 10.1186/gb-2007-8-8-r178
-
Song JS, Johnson WE, Zhu X, Zhang X, Li W, Manrai AK, Liu JS, Chen R, Liu XS. 2007. Model-based analysis of two-color arrays (MA2C). Genome Biol 8: R178. doi: 10.1186/gb-2007-8-8-r178.
-
(2007)
Genome Biol
, vol.8
-
-
Song, J.S.1
Johnson, W.E.2
Zhu, X.3
Zhang, X.4
Li, W.5
Manrai, A.K.6
Liu, J.S.7
Chen, R.8
Liu, X.S.9
-
32
-
-
0042424602
-
Statistical significance for genome-wide studies
-
Storey JD, Tibshirani R. 2003. Statistical significance for genome-wide studies. Proc Natl Acad Sci 100: 9440-9445.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
33
-
-
0035942271
-
Significance analysis of microarrays applied to the ionizing radiation response
-
Tusher VG, Tibshirani R, Chu G. 2001. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci 98: 5116-5121.
-
(2001)
Proc Natl Acad Sci
, vol.98
, pp. 5116-5121
-
-
Tusher, V.G.1
Tibshirani, R.2
Chu, G.3
-
36
-
-
0020871358
-
Diversity, diversity indices and tropical cockroaches
-
Wolda H. 1983. Diversity, diversity indices and tropical cockroaches. Oecologia 58: 290-298.
-
(1983)
Oecologia
, vol.58
, pp. 290-298
-
-
Wolda, H.1
-
37
-
-
0036319960
-
Design issues for cDNA microarray experiments
-
Yang YH, Speed T. 2002. Design issues for cDNA microarray experiments. Nat Rev Genet 3: 579-588.
-
(2002)
Nat Rev Genet
, vol.3
, pp. 579-588
-
-
Yang, Y.H.1
Speed, T.2
-
38
-
-
40749153465
-
A systems biology approach to drug discovery
-
Zhu J, Zhang B, Schadt EE. 2008. A systems biology approach to drug discovery. Adv Genet 60: 603-635.
-
(2008)
Adv Genet
, vol.60
, pp. 603-635
-
-
Zhu, J.1
Zhang, B.2
Schadt, E.E.3
|