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Volumn 6674 LNBI, Issue , 2011, Pages 172-183

The deep coalescence consensus tree problem is Pareto on clusters

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL PROCESS; EFFICIENT ALGORITHM; GENE TREE; OPTIMAL SOLUTIONS; PHYLOGENETICS; POPULATION SIZES; SIMULATION EXPERIMENTS;

EID: 79955817740     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-21260-4_19     Document Type: Conference Paper
Times cited : (5)

References (22)
  • 1
    • 75149135738 scopus 로고    scopus 로고
    • Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
    • Bansal, M., Burleigh, J.G., Eulenstein, O.: Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models. BMC Bioinformatics 11(Suppl 1), S42 (2010)
    • (2010) BMC Bioinformatics , vol.11 , Issue.SUPPL. 1
    • Bansal, M.1    Burleigh, J.G.2    Eulenstein, O.3
  • 3
    • 1642519173 scopus 로고    scopus 로고
    • A classification of consensus methods for phylogenies
    • AMS, Providence
    • Bryant, D.: A classification of consensus methods for phylogenies. In: BioConsensus, DIMACS, pp. 163-184. AMS, Providence (2003)
    • (2003) BioConsensus, DIMACS , pp. 163-184
    • Bryant, D.1
  • 5
    • 0000365320 scopus 로고
    • Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences
    • Goodman, M., Czelusniak, J., Moore, G.W., Romero-Herrera, A.E., Matsuda, G.: Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Systematic Zoology 28(2), 132-163 (1979)
    • (1979) Systematic Zoology , vol.28 , Issue.2 , pp. 132-163
    • Goodman, M.1    Czelusniak, J.2    Moore, G.W.3    Romero-Herrera, A.E.4    Matsuda, G.5
  • 6
    • 0030253222 scopus 로고    scopus 로고
    • Reconstruction of ancient molecular phylogeny
    • Guigo, R., Muchnik, I., Smith, T.F.: Reconstruction of ancient molecular phylogeny. Mol. Phylogenet. Evol. 6(2), 189-213 (1996)
    • (1996) Mol. Phylogenet. Evol. , vol.6 , Issue.2 , pp. 189-213
    • Guigo, R.1    Muchnik, I.2    Smith, T.F.3
  • 7
    • 77249086587 scopus 로고    scopus 로고
    • Bayesian inference of species trees from multilocus data
    • Heled, J., Drummond, A.J.: Bayesian inference of species trees from multilocus data. Molecular Biology and Evolution 27(3), 570-580 (2010)
    • (2010) Molecular Biology and Evolution , vol.27 , Issue.3 , pp. 570-580
    • Heled, J.1    Drummond, A.J.2
  • 8
    • 70450233546 scopus 로고    scopus 로고
    • Estimating species trees: Methods of phylogenetic analysis when there is incongruence across genes
    • Knowles, L.L.: Estimating species trees: Methods of phylogenetic analysis when there is incongruence across genes. Systematic Biology 58(5), 463-467 (2009)
    • (2009) Systematic Biology , vol.58 , Issue.5 , pp. 463-467
    • Knowles, L.L.1
  • 9
    • 63549118031 scopus 로고    scopus 로고
    • STEM: Species tree estimation using maximum likelihood for gene trees under coalescence
    • Kubatko, L.S., Carstens, B.C., Knowles, L.L.: STEM: species tree estimation using maximum likelihood for gene trees under coalescence. Bioinformatics 25(7), 971-973 (2009)
    • (2009) Bioinformatics , vol.25 , Issue.7 , pp. 971-973
    • Kubatko, L.S.1    Carstens, B.C.2    Knowles, L.L.3
  • 10
    • 54949090066 scopus 로고    scopus 로고
    • BEST: Bayesian estimation of species trees under the coalescent model
    • Liu, L.: BEST: bayesian estimation of species trees under the coalescent model. Bioinformatics 24(21), 2542-2543 (2008)
    • (2008) Bioinformatics , vol.24 , Issue.21 , pp. 2542-2543
    • Liu, L.1
  • 11
    • 0031504952 scopus 로고    scopus 로고
    • Gene trees in species trees
    • Maddison, W.P.: Gene trees in species trees. Systematic Biology 46(3), 523-536 (1997)
    • (1997) Systematic Biology , vol.46 , Issue.3 , pp. 523-536
    • Maddison, W.P.1
  • 12
    • 33644606488 scopus 로고    scopus 로고
    • Inferring phylogeny despite incomplete lineage sorting
    • Maddison, W.P., Knowles, L.L.: Inferring phylogeny despite incomplete lineage sorting. Systematic Biology 55(1), 21-30 (2006)
    • (2006) Systematic Biology , vol.55 , Issue.1 , pp. 21-30
    • Maddison, W.P.1    Knowles, L.L.2
  • 14
    • 33750437728 scopus 로고    scopus 로고
    • Widespread discordance of gene trees with species tree in drosophila: Evidence for incomplete lineage sorting
    • Pollard, D.A., Iyer, V.N., Moses, A.M., Eisen, M.B.: Widespread discordance of gene trees with species tree in drosophila: Evidence for incomplete lineage sorting. PLoS Genet. 2(10), e173 (2006)
    • (2006) PLoS Genet. , vol.2 , Issue.10
    • Pollard, D.A.1    Iyer, V.N.2    Moses, A.M.3    Eisen, M.B.4
  • 15
    • 0242365676 scopus 로고    scopus 로고
    • Genome-scale approaches to resolving incongruence in molecular phylogenies
    • Rokas, A., Williams, B.L., King, N., Carroll, S.B.: Genome-scale approaches to resolving incongruence in molecular phylogenies. Nature 425(6960), 798-804 (2003)
    • (2003) Nature , vol.425 , Issue.6960 , pp. 798-804
    • Rokas, A.1    Williams, B.L.2    King, N.3    Carroll, S.B.4
  • 16
    • 0037314098 scopus 로고    scopus 로고
    • r8s: Inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock
    • Sanderson, M.J.: r8s: inferring absolute rates of molecular evolution and divergence times in the absence of a molecular clock. Bioinformatics 19(2), 301-302 (2003)
    • (2003) Bioinformatics , vol.19 , Issue.2 , pp. 301-302
    • Sanderson, M.J.1
  • 17
    • 0031296691 scopus 로고    scopus 로고
    • Inferring species trees from gene trees: A phylogenetic analysis of the elapidae (Serpentes) based on the amino acid sequences of venom proteins
    • Slowinski, J.B., Knight, A., Rooney, A.P.: Inferring species trees from gene trees: A phylogenetic analysis of the elapidae (Serpentes) based on the amino acid sequences of venom proteins. Molecular Phylogenetics and Evolution 8(3), 349-362 (1997)
    • (1997) Molecular Phylogenetics and Evolution , vol.8 , Issue.3 , pp. 349-362
    • Slowinski, J.B.1    Knight, A.2    Rooney, A.P.3
  • 18
    • 70349658769 scopus 로고    scopus 로고
    • Species tree inference by minimizing deep coalescences
    • Than, C., Nakhleh, L.: Species tree inference by minimizing deep coalescences. PLoS Computational Biology 5(9), e1000501 (2009)
    • (2009) PLoS Computational Biology , vol.5 , Issue.9
    • Than, C.1    Nakhleh, L.2
  • 19
    • 78651298101 scopus 로고    scopus 로고
    • Consistency properties of species tree inference by minimizing deep coalescences
    • Than, C.V., Rosenberg, N.A.: Consistency properties of species tree inference by minimizing deep coalescences. Journal of Computational Biology 18(1), 1-15 (2011)
    • (2011) Journal of Computational Biology , vol.18 , Issue.1 , pp. 1-15
    • Than, C.V.1    Rosenberg, N.A.2
  • 20
    • 34447284787 scopus 로고    scopus 로고
    • Properties of supertree methods in the consensus setting
    • Wilkinson, M., Cotton, J.A., Lapointe, F., Pisani, D.: Properties of supertree methods in the consensus setting. Systematic Biology 56(2), 330-337 (2007)
    • (2007) Systematic Biology , vol.56 , Issue.2 , pp. 330-337
    • Wilkinson, M.1    Cotton, J.A.2    Lapointe, F.3    Pisani, D.4
  • 22
    • 80052886059 scopus 로고    scopus 로고
    • From gene trees to species trees II: Species tree inference in the deep coalescence model
    • forthcoming
    • Zhang, L.: From gene trees to species trees II: Species tree inference in the deep coalescence model. IEEE/ACMTrans. Comput. Biol. Bioinformatics (forthcoming, 2011)
    • (2011) IEEE/ACMTrans. Comput. Biol. Bioinformatics
    • Zhang, L.1


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