Genetic factors and diet affect long-bone length in the F34 LG,SM advanced intercross

Mammalian Genome

Volumn 22, Issue 3-4, 2011, Pages 178-196

  Norgard, Elizabeth A ^a   Lawson, Heather A ^a   Pletscher, L Susan ^a   Wang, Bing ^a   Brooks, Victoria R ^a   Wolf, Jason B ^b   Cheverud, James M ^a  

^a WASHINGTON UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b University of Bath   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ADVANCED INTERCROSS LINE; AMINO ACID COMPOSITION; ARTICLE; BONE GROWTH; BONE LENGTH; CONTROLLED STUDY; DIET; FEMALE; FEMUR; GENETIC POLYMORPHISM; GROWTH PLATE; HEREDITY; HUMERUS; LONG BONE; MALE; MUSCULOSKELETAL SYSTEM PARAMETERS; NONHUMAN; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM; TIBIA; ULNA; UPREGULATION;

ANIMALS; BONE DEVELOPMENT; CROSSES, GENETIC; DIET; FEMALE; GENOTYPE; HYBRIDIZATION, GENETIC; MALE; MICE; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTEINS; QUANTITATIVE TRAIT LOCI; QUANTITATIVE TRAIT, HERITABLE;

EID: 79955771922     PISSN: 09388990     EISSN: 14321777     Source Type: Journal    
DOI: 10.1007/s00335-010-9311-5     Document Type: Article

References (31)

1. Beavis W (1994) The power and deceit of QTL experiments: Lessons from comparative QTL studies. Proc Corn Sorghum Ind Res Conf 49:250-266
2. Benelli R, Peissel B, Manenti G, Gariboldi M, Vanzetto C et al (2003) Allele-specific patterns of the mouse parathyroid hormonerelated protein: Influences on cell adhesion and migration. Oncogene 22:7711-7715 (Pubitemid 37485530)
3. Bielohuby M, Matsuura M, Herbach N, Kienzle E, Slawik M et al (2009) Short term exposure to low-carbohydrate, high-fat diets induces low bone mineral density and reduces bone formation in rats. J Bone Miner Res 24:275-284
4. Broman K, Sen S (2009) A Guide to QTL mapping with R/qtl. Springer, New York
5. Brunham L, Singaraja R, Pape T, Kejariwal A, Thomas P et al (2005) Accurate prediction of the functional significance of single nucleotide polymorphisms and mutations in the ABCA1 gene. PLoS Genet 1:e83
6. Cheverud JM, Lawson HA, Fawcett GL, Wang B, Pletscher LS et al (2010) Diet-dependent genetic and genomic imprinting effects on obesity in mice. Obesity (Silver Spring). doi:10.1038/ oby.2010.141
7. Darvasi A (1998) Experimental strategies for the genetic dissection of complex traits in animal models. Nat Genet 18:19-24 (Pubitemid 28027873)
8. Darvasi A, Soller M (1995) Advanced intercross lines, an experimental population for fine genetic mapping. Genetics 141: 1199-1207
9. Falconer D, Mackay T (1996) Introduction to quantitative genetics, 4th edn. Pearson Prentice Hall, Harlow
10. Forriol F, Shapiro F (2005) Bone development: Interaction of molecular components and biophysical forces. Clin Orthop Relat Res 432:14-33 (Pubitemid 40316160)
11. Gianni-Barrera R, Gariboldi M, De Cecco L, Manenti G, Dragani T (2006) Specific gene expression profiles distinguish among functional allelic variants of the mouse Pthlh gene in transfected human cancer cells. Oncogene 25:4501-4504 (Pubitemid 44141639)
12. Griffith O, Montgomery S, Bernier B, Chu B, Kasaian K et al (2008) ORegAnno: An open-access community-driven resource for regulatory annotation. Nucleic Acids Res 36:D107-D113 (Pubitemid 351149705)
13. Haley C, Knott S (1992) A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity 69:315-324
14. Hanada K, Gojobori T, Li W-H (2006) Radical amino acid change versus positive selection in the evolution of viral envelope proteins. Gene 385:83-88 (Pubitemid 44828326)
15. Karsenty G (2003) The complexities of skeletal biology. Nature 423:316-318 (Pubitemid 40852704)
16. Kenney-Hunt J, Vaughn T, Pletscher L, Peripato A, Routman E et al (2006) Quantitative trait loci for body size components in mice. Mamm Genome 17:526-537
17. Kronenberg H (2003) Developmental regulation of the growth plate. Nature 423:332-336 (Pubitemid 40852707)
18. Li J, Ji L (2005) Adjusting multiple testing in multilocus analyses using the eigenvalues of a correlation matrix. Heredity 95:221-227 (Pubitemid 43093236)
19. Lin C-Y, Vega VB, Thomsen JS, Zhang T, Kong SL et al (2007) Whole-genome cartography of estrogen receptor alpha binding sites. PLoS Genet 3:e87
20. Manenti G, Peissel B, Gariboldi M, Falvella F, Zaffaroni D et al (2000) A cancer modifier role for parathyroid hormone-related protein. Oncogene 19:5324-5328
21. Mariani F, Martin G (2003) Deciphering skeletal patterning: Clues from the limb. Nature 423:319-325 (Pubitemid 40852705)
22. Montgomery S, Griffith O, Sleumer M, Bergman C, Bilenky M et al (2006) ORegAnno: An open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation. Bioinformatics 22:637-640 (Pubitemid 43372833)
23. Nilsson O, Marino R, Luca FD, Phillip M, Baron J (2005) Endocrine regulation of the growth plate. Horm Res 64:157-165 (Pubitemid 41642759)
24. Norgard E, Roseman C, Fawcett G, Pavlicev M, Morgan C et al (2008) Identification of quantitative trait loci affecting murine long bone length in a two-generation intercross of LG/J and SM/ J mice. J Bone Miner Res 23:887-895 (Pubitemid 351768807)
25. Norgard E, Jarvis J, Roseman C, Maxwell T, Kenney-Hunt J et al (2009) Replication of long-bone length QTL in the F9-F10 LG, SM advanced intercross. Mamm Genome 20:224-235
26. Provot S, Schipani E (2005) Molecular mechanisms of endochondral bone development. Biochem Biophys Res Commun 328: 658-665 (Pubitemid 40208303)
27. Sanger TJ, Norgard EA, Pletscher LS, Bevilacqua M, Brooks VR et al (2010) Developmental and genetic origins of murine long bone length variation. J Exp Zool B Mol Dev Evol. doi:10.1002/ jez.b.21388
28. Siepel A, Bejerano G, Pedersen J, Hinrichs A, Hou M et al (2005) Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes. Genome Res 15:1034-1050 (Pubitemid 41126859)
29. Thomas P, Campbell M, Kejariwal A, Mi H, Karlak B et al (2003) PANTHER: A library of protein families and subfamilies indexed by function. Genome Res 13:2129-2141 (Pubitemid 37161770)
30. Thomas P, Kejariwal A, Guo N, Mi H, Campbell M et al (2006) Applications for protein sequence-function evolution data: MRNA/protein expression analysis and coding SNP scoring tools. Nucleic Acids Res 34:W645-W650 (Pubitemid 44529850)
31. Wederell ED, Bilenky M, Cullum R, Thiessen N, Dagpinar M et al (2008) Global analysis of in vivo Foxa2-binding sites in mouse adult liver using massively parallel sequencing. Nucleic Acids Res 36:4549-4564