Diffusion Tensor Imaging

Methods in Molecular Biology

Volumn 711, Issue , 2011, Pages 127-144

  Jones, Derek K ^a   Leemans, Alexander ^b  

^a CARDIFF UNIVERSITY   (United Kingdom)

^b UNIVERSITY MEDICAL CENTER UTRECHT   (Netherlands)

Author keywords

data quality; Diffusion tensor; MRI; optimal; pulse sequence; sampling schemes

Indexed keywords

ARTICLE; DIFFUSION TENSOR IMAGING; HEART RATE; HUMAN; METHODOLOGY; PHYSIOLOGY; STATIC ELECTRICITY;

DIFFUSION TENSOR IMAGING; HEART RATE; HUMANS; STATIC ELECTRICITY;

EID: 79955670704     PISSN: 10643745     EISSN: 19406029     Source Type: Book Series    
DOI: 10.1007/978-1-61737-992-5_6     Document Type: Chapter

References (42)

1. Basser, P. J., Mattiello, J., LeBihan, D. MR diffusion tensor spectroscopy and imaging. Biophys J 1994;66: 259–267.
2. Pierpaoli, C., Jezzard, P., Basser, P. J., Barnett, A., Di Chiro, G. Diffusion tensor MR imaging of the human brain. Radiology 1996;201:637–648.
3. Stejskal, E. O., Tanner, J. E. Spin diffusion measurements: Spin echoes in the presence of a time-dependent field gradient. J Chem Phys 1965;42:288–292.
4. Moseley, M. E., Cohen, Y. C., Kucharczyk, J., Asgari, H. S., Wendland, M. F., Tsu-ruda, J., Norman, D. Diffusion-weighted MR imaging of anisotropic water diffusion in cat central nervous system. Radiology 1990;176:439–445.
5. Pajevic, S., Pierpaoli, C. Color schemes to represent the orientation of anisotropic tissues from diffusion tensor data: Application to white matter fiber tract mapping in the human brain. Magn Reson Med 1999;42:526–540 (Erratum in: Magn Reson Med 2000 43:921).
6. Mori, S., Crain, B. J., Chacko, V. P., van Zijl, P. C. Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann Neurol 1999;45: 265–269.
7. Jones, D. K., Simmons, A., Williams, S. C., Horsfield, M. A. Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI. Magn Reson Med 1999;42:37–41.
8. Conturo, T. E., Lori, N. F., Cull, T. S., Akbu-dak, E., Snyder, A. Z., Shimony, J. S., McKinstry, R. C., Burton, H., Raichle, M. E. Tracking neuronal fiber pathways in the living human brain. Proc Natl Acad Sci USA 1999;96:10422–10427.
9. Basser, P. J., Pajevic, S., Pierpaoli, C., Duda, J., Aldroubi, A. In vivo fiber tractography using DT-MRI data. Magn Reson Med 2000;44:625–632.
10. Parker, G. J. M., Haroon, H. A. et al. A framework for a streamline-based probabilistic index of connectivity (PICo) using a structural interpretation of MRI diffusion measurements. J Magn Reson Imag 2003;18:242–254.
11. Reese, T. G., Heid, O., Weisskoff, R. M., Wedeen, V. J. Reduction of eddy-current-induced distortion in diffusion MRI using a twice-refocused spin echo. Magn Reson Med 2003;49:177–182.
12. Bammer, R., Auer, M., Keeling, S. L., Augustin, M., Stables, L. A., Prokesch, R. W., Stollberger, R., Moseley, M. E., Fazekas, F. Diffusion tensor imaging using single-shot SENSE-EPI. Magn Reson Med 2002;48:128–136.
13. Hiltunen, J., Hari, R., Jousmäki, V., Müller, K., Sepponen, R., Joensuu, R. Quantification of mechanical vibration during diffusion tensor imaging at 3 T. Neuroimage 2006;32: 93–103.
14. Pruessmann, K. P., Weiger, M., Scheideg-ger, M. B., Boesiger, P. SENSE: Sensitivity encoding for fast MRI. Magn Reson Med 1999;42:952–962.
15. Griswold, M. A., Jakob, P. M., Heidemann, R. M., Nittka, M., Jellus, V., Wang, K., Kiefer, B., Haase, A. Generalized autocalibrating partially parallel acquisitions (GRAPPA). Magn Reson Med 2002;47:1202–1210.
16. Edelstein, W. A., Bottomley, P. A., Pfeifer, L. M. A signal-to-noise calibration procedure for NMR imaging systems. Med Phys 1984;11:180–185.
17. Gudbjartsson, H., Patz, S. The Rician distribution of noisy MRI data. Magn Reson Med 1995;34:910–914.
18. Dietrich, O., Heiland, S., Sartor, K. Noise correction for the exact determination of apparent diffusion coefficients at low SNR. Magn Reson Med 2001;45:448–453.
19. Jones, D. K., Basser, P. J. “Squashing peanuts and smashing pumpkins”: How noise distorts diffusion-weighted MR data. Magn Reson Med 2004;52:979–993.
20. Basser, P. J., Pierpaoli, C. Microstructural and physiological features of tissue elucidated by quantitative-diffusion-tensor MRI. J Magn Reson B 1996;111:209–219.
21. Jones, D. K., Horsfield, M. A., Simmons, A. Optimal strategies for measuring diffusion in anisotropic systems by magnetic resonance imaging. Magn Reson Med 1999;42: 515–525.
22. Jones, D. K. The effect of gradient sampling schemes on measures derived from diffusion tensor MRI: A Monte Carlo study. Magn Reson Med 2004;51:807–815.
23. Conturo, T. E., McKinstry, R. C., Akbu-dak, E., Robinson, B. H. Encoding of anisotropic diffusion with tetrahedral gradients: A general mathematical diffusion formalism and experimental results. Magn Reson Med 1996;35:399–412.
24. Cook, P. A., Symms, M., Boulby, P. A., Alexander, D. C. Optimal acquisition orders of diffusion-weighted MRI measurements. J Magn Reson Imaging 2007;25: 51–58.
25. Dubois, J., Poupon, C., Lethimonnier, F., Le Bihan, D. Optimized diffusion gradient orientation schemes for corrupted clinical DTI data sets. Magma 2006;19: 134–143.
26. Cook, P. A., Bai, Y., Nedjati-Gilani, S., Seu-narine, K. K., Hall, M. G., Parker, G. J., Alexander, D. C. (2006) Camino: Open-Source Diffusion-MRI Reconstruction and Processing, 14th Scientific Meeting of the International Society for Magnetic Resonance in Medicine, Seattle, WA, USA, p. 2759, May 2006.
27. Pierpaoli, C., Basser, P. J. Toward a quantitative assessment of diffusion anisotropy. Magn Reson Med 1996;36:893–906.
28. Turner, R., Le Bihan, D., Maier, J., Vavrek, R., Hedges, L. K., Pekar, J. Echo-planar imaging of intravoxel incoherent motions. Radiology 1990;177:407–414.
29. Skare, S., Andersson, J. L. On the effects of gating in diffusion imaging of the brain using single shot EPI. Magn Reson Imaging 2001;19:1125–1128.
30. Pierpaoli, C., Marenco, S., Rohde, G., Jones, D. K., Barnett, A. S. (2003). Analyzing the contribution of cardiac pulsation to the variability of quantities derived from the diffusion tensor in “Proc. ISMRM 11th Annual Meeting, Toronto” p. 70.
31. Jones, D. K., Pierpaoli, C. (2005) The contribution of cardiac pulsation to variability in tractography results. In “Proc. ISMRM 13th Annual Meeting, Miami”, p. 225.
32. Poncelet, B. P., Wedeen, V. J., Weisskoff, R. M., Cohen, M. S. Brain parenchyma motion: Measurement with cine echo-planar MR imaging. Radiology 1992;185: 645–651.
33. Enzmann, D. R., Pelc, N. J. Brain motion: Measurement with phase-contrast MR imaging. Radiology 1992;185: 653–660.
34. Rohde, G. K., Barnett, A. S., Basser, P. J., Marenco, S., Pierpaoli, C. Comprehensive approach for correction of motion and distortion in diffusion-weighted MRI. Magn Reson Med 2004;51:103–114.
35. Andersson, J. L., Skare, S. A model-based method for retrospective correction of geometric distortions in diffusion-weighted EPI. Neuroimage 2002;16: 177–199.
36. Maes, F., Collignon, A., Vandermeulen, D., Marchal, G., Suetens, P. Multimodality image registration by maximization of mutual information. IEEE Trans Med Imaging 1997;16:187–198.
37. Studholme, C., Constable, R. T., Duncan, J. S. Accurate alignment of functional EPI data to anatomical MRI using a physics-based distortion model. IEEE Trans Med Imaging 2000;19:1115–1127.
38. Leemans, A., Jones, D. K. The B-matrix must be rotated when motion correcting diffusion tensor imaging data. Magn Reson Med 2009;61:1336–1349.
39. Koay, C. G., Chang, L. C., Carew, J. D., Pierpaoli, C., Basser, P. J. A unifying theoretical and algorithmic framework for least squares methods of estimation in diffusion tensor imaging. J Magn Reson 2006;182: 115–125.
40. Bevington, P. R., Robinson, D. K. Data Reduction and Error Analysis for the Physical Sciences, 2nd ed. New York, NY: McGraw-Hill; 1992.
41. Leemans, A., Evans, C. J., Jones, D. K. (2008). Quality assessment through analysis of residuals of diffusion image fitting. In “Proc. ISMRM 16th Annual Meeting, Toronto”. p. 3300.
42. Hasan, K. M., Alexander, A. L., Narayana, P. A. Does fractional anisotropy have better noise immunity characteristics than relative anisotropy in diffusion tensor MRI? An analytical approach. Magn Reson Med 2004;51:413–417.