Toward a molecular understanding of cold activity of enzymes from psychrophiles

Extremophiles

Volumn 4, Issue 2, 2000, Pages 83-90

  Russell, Nicholas J ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

Biotechnology; Cold adaptation; Cold active enzymes; Molecular conformation; Protein structure; Psychrophilic bacteria

Indexed keywords

BACTERIA (MICROORGANISMS);

AMYLASE; BACTERIAL PROTEIN; CITRATE SYNTHASE; ENZYME; LACTATE DEHYDROGENASE; MALATE DEHYDROGENASE; TRIOSEPHOSPHATE ISOMERASE;

ADAPTATION; ARCHAEBACTERIUM; BACTERIUM; CHEMISTRY; COLD; ENZYMOLOGY; GENETICS; METABOLISM; METHODOLOGY; MICROBIOLOGY; PROTEIN TERTIARY STRUCTURE; REVIEW;

ADAPTATION, PHYSIOLOGICAL; ALPHA-AMYLASE; ARCHAEA; BACTERIA; BACTERIAL PROTEINS; CITRATE (SI)-SYNTHASE; COLD; ENZYMES; INDUSTRIAL MICROBIOLOGY; L-LACTATE DEHYDROGENASE; MALATE DEHYDROGENASE; PROTEIN STRUCTURE, TERTIARY; TRIOSE-PHOSPHATE ISOMERASE;

EID: 0034170458     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007920050141     Document Type: Short Survey

References (39)

1. Aghajari N, Feller G, Gerday C, Haser R (1996) Crystallization and preliminary X-ray diffraction studies of α-amylase from the antarctic psychrophile Alteromonas haloplanctis A23. Protein Sci 5:2128-2129
2. Aghajari N, Feller G, Gerday C, Haser R (1998) Crystal structures of the psychrophilic α-amylase from Alteromonas haloplanctis in its native form and complexed with an inhibitor. Protein Sci 7:564-572
3. Alvarez M, Zeelen JP, Mainfroid V, Rentier-Delruc F, Martial JA, Wyns L, Wieranga RK, Maes D (1998) Triose-phosphate isomerase (TIM) of the psychrophilic bacterium Vibrio marinus. Kinetic and structural properties. J Biol Chem 273:2199-2206
4. Arpigny JL, Feller G, Gerday C (1993) Cloning, sequence, and structural features of a lipase from the antarctic facultative psychrophile Psychrobacter immobilis B10. Biochim Biophys Acta 1171:331-333
5. Choo D-W, Kurihara T, Susuki T, Soda K, Esaki, N (1998) A cold-adapted lipase of an Alaskan psychrotroph, Pseudomonas sp. strain B11-1: gene cloning and enzyme purification and characterization. Appl Env Microhiol 64:486-491
6. Clarke AR, Evington JRN, Dunn CR, Atkinson T, Holbrook JJ (1986) The molecular pathway by which fructose 1,6-bisphosphate induces the assembly of a bacterial lactate dehydrogenase. Biochim Biophys Acta 870:112-126
7. Davail S, Feller G, Narinx E, Gerday C (1994) Cold adaptation of proteins. Purification, characterization and sequence of the heat-labile subtilisin from the antarctic psychrophile Bacillus TA41. J Biol Chem 269:17448-17453
8. Feller G, Gerday C (1997) Psychrophilic enzymes: molecular basis of cold adaptation. Cell Mol Life Sci 53:836-841
9. Feller G, Thiry M, Gerday C (1991) Nucleotide sequence of the lipase gene lip2 from the antarctic psychrotroph Moraxella TA144 and site-specific mutagenesis of the conserved serine and histidine residues. DNA Cell Biol 10:381-388
10. Feller G, Lonhienne T, Deroanne C, Libioulle C, Van Beeumenn J, Gerday C (1992) Purification, characterization and nucleotide sequence of the thermolabile α-amylase from the antarctic psychrotroph Alteromonas haloplanctis A23. J Biol Chem 267:5217-5221
11. Feller G, Payan F, Theys F, Qian M, Haser R, Gerday C (1994) Stability and structural analysis of α-amylase from the antarctic psychrophile Alteromonus haloplanctis A23. Eur J Biochem 222:441-447
12. Feller G, le Bussy O, Houssier C, Gerday C (1996a) Structural and functional aspects of chloride binding to Alteromonas haloplanctis α-amylase. J Biol Chem 271:23826-23841
13. Feller G, Narinx E, Arpigny JL, Aittaleb M, Baise E, Genicot S, Gerday C (1996b) Enzymes from psychrophilic organisms. FEMS Microbiol Rev 18:189-202
14. Franks F (1995) Protein destabilizalion at low temperatures. Adv Protein Chem 46:105-139
15. Gerday C, Aittaleb M, Arpigny JL, Baise E, Chessa J-P, Garsoux G, Petrescu I, Feller G (1997) Psychrophilic enzymes: a thermodynamic challenge. Biochim Biophys Acta 1342:119-131
16. Gerike U, Danson MJ, Russell NJ, Hough DW (1997) Sequencing and expression of the gene encoding a cold-active citrate synthase from an Antarctic bacterium, strain DS2-3R. Eur J Biochem 248:49-57
17. Gerike U, Russell RJM, Danson MJ, Hough DW, Russell NJ, Taylor GL (1998) Preliminary crystallographic studies of citrate synthase from an Antarctic psychrotolerant bacterium. Acta Crystallogr D54:1012-1013
18. Gounot A-M (1991) Bacterial life at low temperature: physiological aspects and biotechnological implications. J Appl Bacteriol 71:386-397
19. Gutshall KR, Trimbur DE, Kasmir JJ, Brenchley JE (1995) Analysis of a novel gene and β-galactosidase isozyme from a psychrotrophic Arthrobacter isolate. J Bacteriol 177:1981-1988
20. Heimstad ES, Hansen LK, Smalås AO (1995) Comparative molecular dynamics simulation studies of salmon and bovine trypsins in aqueous solution. Protein Eng 8:379-388
21. Ishii A, Susuki M, Sahara I, Takada Y, Sasaki S, Fukunaga N (1993) Genes encoding two isocitrate dehydrogenase isozymes of a psychrophilic bacterium, Vibrio sp. strain ABE-1. J Bacteriol 175:6873-6880
22. Jaenicke R (1991) Protein stability and molecular adaptation to extreme conditions. Eur J Biochem 202:715-728
23. Kim S-Y, Hwang KY, Kim S-H, Sung H-A, Han YS, Cho Y (1999) Structural basis for cold adaptation. Sequence, biochemical properties, and crystal structure of malate dehydrogenase from a psychrophile Aquaspirillium arcticum. J Biol Chem 274:11761-11767
24. Marshall CJ (1997) Cold-adapted enzymes. TIBTECH 15:359-364
25. McKay DB, Jennings MP, Godfrey EA, MacRae IC, Rogers PJ, Beacham IR (1992) Molecular analysis of an esterase-encoding gene from a lipolytic psychrotrophic pseudomonad. J Gen Microbiol 138:701-708
26. Narinx E, Blaise E, Gerday C (1997) Subtilisin from psychrophilic Antarctic bacteria. Characterization and site-directed mutagenesis of residues possibly involved in the adaptation to cold. Protein Eng 10:1271-1279
27. Rentier-Delrue F, Mande SC, Moyens S, Terpstra P, Mainfroid V, Goraj K, Lion M, Hol WG, Martial J (1993) Cloning and overexpression of the triosephosphate isomerase genes from psychrophilic and thermophilic bacteria. Structural comparison of the predicted protein sequence. J Mol Biol 229:85-93
28. Russell NJ (1989) Functions of lipids: structural roles and membrane functions. In: Ratledge C, Wilkinson SC (eds) Microbial lipids, vol 2. Academic Press, London, pp. 279-365
29. Russell NJ (1990) Cold adaptation of microorganisms. Philos Trans R Soc Lond Series B 329:595-611
30. Russell NJ (1998) Molecular adaptations in psychrophilic bacteria: potential for biotechnological applications. Biochem Eng Biotechnol 61:1-21
31. Russell NJ, Hamamoto T (1998) Psychrophiles. In: Horikoshi K, Grant WD (eds) Extremophiles: microbial life in extreme environments. Wiley-Liss, New York
32. Russell RJM, Gerike U, Danson MJ, Hough DW, Taylor GL (1998) Structural adaptations of the cold-active citrate synthase from an Antarctic bacterium. Structure (Lond) 6:351-361
33. Schlatter D, Kriech O, Suter F, Zuber H (1987) The primary structure of the psychrophilic lactate dehydrogenase from Bacillus psychrosaccharolyticus. Biol Chem Hoppe-Seyler 368:1435-1436
34. Smalas AO, Heimstad ES, Hordvik A, Willasen P, Male R (1994) Cold adaptation adaptation of enzymes: structural comparison between salmon and bovine trypsins. Protein Struct Fund Genet 20:149-166
35. Taguchi S, Ozaki A, Momose H (1998) Engineering of a cold-adapted protease by sequential random mutagenesis and a screening system. Appl Environ Microbiol 64:492-495
36. Thomas T, Cavicchioli R (1998) Archaeal cold-adapted proteins: structural and evolutionary analysis of the elongation factor 2 from psychrophilic, mesophilic and thermiphilic methanogens. FEBS Lett 439:281-286
37. Tsigos I, Velonia K, Smonou I, Bouriotis V (1998) Purification and characterization of an alcohol dehydrogenase from the Antarctic psychrophile Moraxella sp. TAE123. Eur J Biochem 254:356-362
38. Vckovski V, Schlatter D, Zuber H (1990) Structure and function of L-lactate dehydrogenase from psychrophilic and thermophilic bacteria. Biol Chem Hoppe-Seyler 371:103-110
39. Wallon G, Lovett ST, Magyar C, Svingor A, Szilagyi A, Zàvodszky P, Ringe D, Petsko GA (1997) Sequence and homology model of 3-isopropylmalate dehydrogenase from the psychrotrophic bacterium Vibrio sp. 15 suggest reasons for the thermal instability. Protein Eng 10:665-672