The effects of linkage disequilibrium in large scale SNP datasets for MDR

BioData Mining

Volumn 4, Issue 1, 2011, Pages

  Grady, Benjamin J ^a   Torstenson, Eric S ^a   Ritchie, Marylyn D ^a  

^a VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ALGORITHM; ARTICLE; COMPUTER PROGRAM; DATA ANALYSIS; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE STRUCTURE; GENETIC ASSOCIATION; HUMAN; MULTIFACTOR DIMENSIONALITY REDUCTION; PRIORITY JOURNAL; SENSITIVITY ANALYSIS; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 79955564727     PISSN: None     EISSN: 17560381     Source Type: Journal    
DOI: 10.1186/1756-0381-4-11     Document Type: Article

References (12)

1. Linkage disequilibrium - understanding the evolutionary past and mapping the medical future. M Slatkin, Nat Rev Genet 2008 9 477 485 18427557 (Pubitemid 351693977)
2. Association study designs for complex diseases. LR Cardon JI Bell, Nat Rev Genet 2001 2 91 99 11253062 (Pubitemid 33674000)
3. Multifactor-dimensionality reduction reveals high-order interactions among estrogen-metabolism genes in sporadic breast cancer. MD Ritchie LW Hahn N Roodi LR Bailey WD Dupont FF Parl JH Moore, Am J Hum Genet 2001 69 138 147 10.1086/321276 11404819 (Pubitemid 32614026)
4. Epistatic interactions between loci of one-carbon metabolism modulate susceptibility to breast cancer. SM Naushad A Pavani RR Digumarti SR Gottumukkala VK Kutala, Mol Biol Rep 2010
5. ABCB1 and GST polymorphisms associated with TP53 status in breast cancer. SH Nordgard MD Ritchie SD Jensrud AA Motsinger GI Alnaes G Lemmon M Berg S Geisler JH Moore PE Lonning AL Borresen-Dale VN Kristensen, Pharmacogenet Genomics 2007 17 127 136 10.1097/FPC.0b013e328011abaa 17301692
6. Xenobiotic metabolizing and transporter genes: gene-gene interactions in schizophrenia and related disorders. P Gasso S Mas S Alvarez G Trias M Bioque C Oliveira M Bernardo A Lafuente, Pharmacogenomics 2010 11 1725 1731 10.2217/pgs.10.158 21142916
7. Interactions among related genes of renin-angiotensin system associated with type 2 diabetes. JK Yang JB Zhou Z Xin L Zhao M Yu JP Feng H Yang YH Ma, Diabetes Care 2010 33 2271 2273 10.2337/dc10-0349 20592051
8. Power of multifactor dimensionality reduction for detecting gene-gene interactions in the presence of genotyping error, missing data, phenocopy, and genetic heterogeneity. MD Ritchie LW Hahn JH Moore, Genet Epidemiol 2003 24 150 157 10.1002/gepi.10218 12548676 (Pubitemid 36158211)
9. Conquering the Needle-in-a-Haystack: How Correlated Input Variables Beneficially Alter the Fitness Landscape for Neural Networks. SD Turner MD Ritchie WS Bush, Lect Notes Comput Sci 2009 5483 80 91 10.1007/978-3-642-01184- 9-8 19578549
10. Data simulation software for whole-genome association and other studies in human genetics. S Dudek AA Motsinger D Velez SM Williams MD Ritchie, Pac Symp Biocomput 2006 11 499 510
11. Generating Linkage Disequilibrium Patterns in Data Simulations Using genomeSIMLA. TL Edwards WS Bush SD Turner SM Dudek ES Torstenson M Schmidt E Martin MD Ritchie, Lecture Notes in Computer Science 2008 4793 24 35
12. A flexible growth function for empirical use. FJ Richards, J Exp Bot 1959 10 290 300 10.1093/jxb/10.2.290