Assessment of radiation damage behaviour in a large collection of empirically optimized datasets highlights the importance of unmeasured complicating effects

Journal of Synchrotron Radiation

Volumn 18, Issue 3, 2011, Pages 387-397

  Krojer, Tobias ^a   Von Delft, Frank ^a  

^a UNIVERSITY OF OXFORD   (United Kingdom)

Author keywords

beamline software; data collection; datasets; radiation damage; strategy

Indexed keywords

AUTOMATIC PREDICTION; BEAM LINES; BEAM SIZE; CRYSTAL VOLUME; DATA COLLECTION; DATASETS; FLUX DENSITY DISTRIBUTION; MICROFOCUS BEAMS; REAL TIME; STRATEGY; TWO-DIMENSIONAL IMAGES;

DAMAGE DETECTION; DIFFRACTION; OPTIMIZATION; RADIATION DAMAGE;

DATA ACQUISITION;

PROTEIN;

ARTICLE; EMPIRICAL RESEARCH; RADIATION EXPOSURE; X RAY CRYSTALLOGRAPHY;

CRYSTALLOGRAPHY, X-RAY; EMPIRICAL RESEARCH; PROTEINS;

EID: 79955557178     PISSN: 09090495     EISSN: 16005775     Source Type: Journal    
DOI: 10.1107/S0909049511008235     Document Type: Article

References (43)

1. Aishima, J., Owen, R. L., Axford, D., Shepherd, E.,Winter, G., Levik, K., Gibbons, P., Ashton, A. & Evans, G. (2010). Acta Cryst. D66, 1032-1035.
2. Arnott, S. & Wonacott, A. J. (1966). Polymer, 7, 157-166.
3. Banumathi, S., Zwart, P. H., Ramagopal, U. A., Dauter, M. & Dauter, Z. (2004). Acta Cryst. D60, 1085-1093.
4. Beteva, A. et al. (2006). Acta Cryst. D62, 1162-1169.
5. BIOXHIT (2010). High Precision Kappa-Goniometer with Fully Motorized Goniometer Head, http://icarus.embl-hamburg. de/bioxhit / highPrecisionKappaGoniometerWithFullyMotorised GoniometerHead.jsp.
6. Blake, C. & Phillips, D. (1962). Biological Effects of Ionizing Radiation at the Molecular Level, pp. 183-191. International Atomic Energy Agency.
7. Borek, D., Cymborowski, M., Machius, M., Minor, W. & Otwinowski, Z. (2010). Acta Cryst. D66, 426-436.
8. Borek, D., Ginell, S. L., Cymborowski, M., Minor, W. & Otwinowski, Z. (2007). J. Synchrotron Rad. 14, 24-33.
9. Bourenkov, G. P., Bogomolov, A. & Popov, A. N. (2006). The 4th International Workshop on X-ray Damage to Biological Crystalline Samples, SPring-8, Japan.
10. Bourenkov, G. P. & Popov, A. N. (2006). Acta Cryst. D62, 58-64.
11. Bourenkov, G. P. & Popov, A. N. (2010). Acta Cryst. D66, 409-419.
12. Bowler, M. W., Guijarro, M., Petitdemange, S., Baker, I., Svensson, O., Burghammer, M., Mueller-Dieckmann, C., Gordon, E. J., Flot, D., McSweeney, S. M. & Leonard, G. A. (2010). Acta Cryst. D66, 855-864.
13. Brockhauser, S., Di Michiel, M., McGeehan, J. E., McCarthy, A. A. & Ravelli, R. B. G. (2008). J. Appl. Cryst. 41, 1057-1066.
14. Burmeister, W. P. (2000). Acta Cryst. D56, 328-341.
15. Diederichs, K. (2006). Acta Cryst. D62, 96-101.
16. Diederichs, K. (2010). Acta Cryst. D66, 733-740.
17. Duke, E. M. H., Evans, G., Flaig, R., Hall, D. R., Latchem, M., McAuley, K. E., Sandy, D. J., Sorensen, T. L., Waterman, D. & Johnson, L. N. (2010). AIP Conf. Proc. 1234, 165-168.
18. Evans, G., Alianelli, L., Burt, M., Wagner, A. & Sawhney, K. J. S. (2007). AIP Conf. Proc. 879, 836-839.
19. Evans, P. (2006). Acta Cryst. D62, 72-82.
20. Flot, D., Gordon, E. J., Hall, D. R., Leonard, G. A., McCarthy, A., McCarthy, J., McSweeney, S., Mitchell, E., Nurizzo, D., Ravelli, R. G. B. & Shepard, W. (2006). Acta Cryst. D62, 65-71.
21. Garman, E. F. & Nave, C. (2009). J. Synchrotron Rad. 16, 129-132.
22. Garman, E. F. & Schneider, T. R. (1997). J. Appl. Cryst. 30, 211-237.
23. Gileadi, O., Knapp, S., Lee, W. H., Marsden, B. D., Müller, S., Niesen, F. H., Kavanagh, K. L., Ball, L. J., von Delft, F., Doyle, D. A., Oppermann, U. C. & Sundström, M. (2007). J. Struct. Funct. Genomics, 8, 107-119.
24. González, A., Moorhead, P., McPhillips, S. E., Song, J., Sharp, K., Taylor, J. R., Adams, P. D., Sauter, N. K. & Soltis, S. M. (2008). J. Appl. Cryst. 41, 176-184.
25. Hendrickson, W. A. (1976). J. Mol. Biol. 106, 889-893.
26. Holton, J. (2005). Annual Meeting of the American Crystallographic Association, Orlando, FL, USA. Abstract W0308.
27. Holton, J. M. (2009). J. Synchrotron Rad. 16, 133-142.
28. Howells, M., Beetz, T., Chapman, H., Cui, C., Holton, J., Jacobsen, C., Kirz, J., Lima, E., Marchesini, S., Miao, H., Sayre, D., Shapiro, D., Spence, J. & Starodub, D. (2009). J. Electron Spectrosc. Relat. Phenom. 170, 4-12.
29. Incardona, M.-F., Bourenkov, G. P., Levik, K., Pieritz, R. A., Popov, A. N. & Svensson, O. (2009). J. Synchrotron Rad. 16, 872-879.
30. Kabsch, W. (2010). Acta Cryst. D66, 125-132.
31. Kmetko, J., Husseini, N. S., Naides, M., Kalinin, Y. & Thorne, R. E. (2006). Acta Cryst. D62, 1030-1038.
32. Leslie, A. G. W. (2006). Acta Cryst. D62, 48-57.
33. McCoy, A. J., Grosse-Kunstleve, R. W., Adams, P. D., Winn, M. D., Storoni, L. C. & Read, R. J. (2007). J. Appl. Cryst. 40, 658-674.
34. Meents, A., Gutmann, S., Wagner, A. & Schulze-Briese, C. (2010). Proc. Natl. Acad. Sci. 107, 1094-1099.
35. Murray, J.W., Garman, E. F. & Ravelli, R. B. G. (2004). J. Appl. Cryst. 37, 513-522.
36. Nave, C. & Hill, M. A. (2005). J. Synchrotron Rad. 12, 299-303.
37. Otwinowski, Z., Borek, D., Majewski, W. & Minor, W. (2003). Acta Cryst. A59, 228-234.
38. Owen, R. L., Rudiño-Piñera, E. & Garman, E. F. (2006). Proc. Natl. Acad. Sci. 103, 4912-4917.
39. Ravelli, R. B. & McSweeney, S. M. (2000). Structure, 8, 315-328.
40. Sauter, N. K., Grosse-Kunstleve, R.W. & Adams, P. D. (2004). J. Appl. Cryst. 37, 399-409.
41. Teng, T.-Y. (1990). J. Appl. Cryst. 23, 387-391.
42. Warkentin, M. & Thorne, R. E. (2010). Acta Cryst. D66, 1092-1100.
43. Weik, M., Ravelli, R. B. G., Kryger, G., McSweeney, S., Raves, M. L., Harel, M., Gros, P., Silman, I., Kroon, J. & Sussman, J. L. (2000). Proc. Natl. Acad. Sci. 97, 623-628.