Structural effects of radiation damage and its potential for phasing

Acta Crystallographica Section D: Biological Crystallography

Volumn 60, Issue 6, 2004, Pages 1085-1093

  Banumathi, Sankaran ^a   Zwart, Petrus H ^b   Ramagopal, Udupi A ^a,c   Dauter, Miroslawa ^b   Dauter, Zbigniew ^a  

^a BROOKHAVEN NATIONAL LABORATORY   (United States)

^b SAIC FREDERICK INC   (United States)

^c ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ASPARTIC ACID; GLUTAMIC ACID; SULFUR; THAUMATIN PROTEIN, PLANT; VEGETABLE PROTEIN;

ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; METHODOLOGY; PROTEIN CONFORMATION; RADIATION RESPONSE; STATISTICAL MODEL; THEORETICAL MODEL; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

ASPARTIC ACID; CRYSTALLOGRAPHY, X-RAY; GLUTAMIC ACID; MODELS, MOLECULAR; MODELS, STATISTICAL; MODELS, THEORETICAL; PLANT PROTEINS; PROTEIN CONFORMATION; RADIATION EFFECTS; SULFUR; X-RAY DIFFRACTION;

EID: 16644367850     PISSN: 09074449     EISSN: None     Source Type: Journal    
DOI: 10.1107/S0907444904007917     Document Type: Article

References (40)

1. Abrahams, S. C. & Marsh, P. (1987). Acta Cryst. A43, 265-269.
2. Arndt, U. W. & Wonacott, A. J. (1977). The Rotation Method in Crystallography. Amsterdam: North Holland.
3. Blake, C. C. F. & Phillips, D. C. (1962). Biological Effects of Ionizing Radiation at the Molecular Level, pp. 183-191. Vienna: IAEA.
4. Brünger, A. (1992). Nature (London), 355, 472-474.
5. Burmeister, W. P. (2000). Acta Cryst. D56, 328-341.
6. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
7. Cowtan, K. (2002). J. Appl. Cryst. 35, 655-663.
8. Dauter, Z. (1999). Acta Cryst. D55, 1703-1717.
9. Diederichs, K., McSweeney, S. & Ravelli, R. G. B. (2003). Acta Cryst. D59, 903-909.
10. Dudewicz, E. J. & Mishra, S. N. (1988). Modern Mathematical Statistics. New York: Wiley.
11. Foadi, J., Woolfson, M. M., Dodson, E. J., Wilson, K. S., Jia-Xing, Y. & Chao-De, Z. (2000). Acta Cryst. D56, 1137-1147.
12. Garman, E. (2003). Curr. Opin. Struct. Biol. 13, 545-551.
13. Garman, E. & Nave, C. (2002). J. Synchrotron. Rad. 9, 327-328.
14. Gonzalez, A. & Nave, C. (1994). Acta Cryst. D50, 874-877.
15. Henderson, R. (1990). Proc. R. Soc. London Ser. B, 241, 6-8.
16. Hendrickson, W. A. (1976). J. Mol. Biol. 106, 889-S93.
17. Hope, H. (1988). Acta Cryst. B44, 22-26.
18. Ko, T.-P., Day, J., Greenwood, A. & McPherson, A. (1994). Acta Cryst. D50, 813-825.
19. La Fortelle, E. de & Bricogne, G. (1997). Methods Enzymol. 276, 472-494.
20. Leiros, H. K., McSweeney, S. M. & Smalås, A. O. (2001). Acta Cryst. D57, 488-497.
21. Müller, R., Weckert, E., Zellner, J. & Drakopoulos, M. (2002). J. Synchrotron Rad. 9, 368-374.
22. Murray, J., Garman, E. & Ravelli, R. B. G. (2004). Submitted.
23. Murshudov, G. N., Vagin, A. A., Lebedev, A., Wilson, K. S. & Dodson, E. J. (1999). Acta Cryst. D55, 247-255.
24. O'Neill, P., Stevens, D. L. & Garman, E. F. (2002). J. Synchrotron Rad. 9, 329-332.
25. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 307-326.
26. Perrakis, A., Morris, R. & Lamzin, V. S. (1999). Nature Struct. Biol. 6, 458-463.
27. Ramagopal, U. A., Dauter, M. & Dauter, Z. (2003). Acta Cryst. D59, 1020-1027.
28. Ravelli, R. B. G. & McSweeney, S. M. (2000). Structure, 8, 315-328.
29. Ravelli, R. B. G., Schrøder-Leiros, H. K., Pan, B., Caffrey, M. & McSweeney, S. (2003). Structure, 11, 217-224.
30. Ravelli, R. B. G., Theveneau, P., McSweeney, S. & Caffrey, M. (2002). J. Synchrotron Rad. 9, 355-360.
31. Schneider, T. R. & Sheldrick, G. M. (2002). Acta Cryst. D58, 1772-1779.
32. Sheldrick, G. M. (2001). XPREP program, v. 6.13. Bruker-Nonius Inc., Madison, Wisconsin, USA.
33. Sheldrick, G. M. & Schneider, T. R. (1997). Methods Enzymol. 277, 319-343.
34. Sliz, P., Harrison, S. C. & Rosenbaum, G. (2003). Structure, 11, 13-19.
35. Teng, T.-Y. (1990). J. Appl. Cryst. 23, 387-391.
36. Wang, B.-C. (1985). Methods Enzymol. 115, 90-112.
37. Weik, M., Kryger, G., Schreurs, A. M. M., Bouma, B., Silman, I., Sussman, J. L., Gros, P. & Kroon, J. (2001). Acta Cryst. D57, 566-573.
38. Weik, M., Ravelli, R. B. G., Kryger, G., McSweeney, S., Raves, M. L., Harel, M., Gros, P., Silman, I., Kroon, J. & Sussman, J. L. (2000). Proc. Natl Acad. Sci. USA, 97, 623-628.
39. Weisstein, E. W. (1999). Least-Squares Fitting - Polynomial, http:// mathworld.wolfram.com/LeastSquaresFittingPolynomial.html.
40. Yonath, A. et al. (1998). Acta Cryst. A54, 945-955.