Comparison of the bacterial communities of wild and captive sponge Clathria prolifera from the Chesapeake Bay

Marine Biotechnology

Volumn 11, Issue 6, 2009, Pages 758-770

  Isaacs, LeLeng To ^a   Kan, Jinjun ^b,c   Nguyen, Linh ^a   Videau, Patrick ^a   Anderson, Matthew A ^b   Wright, Toby L ^a,b   Hill, Russell T ^b  

^a GOUCHER COLLEGE   (United States)

^b UNIVERSITY OF MARYLAND BIOTECHNOLOGY INSTITUTE   (United States)

^c UNIVERSITY OF SOUTHERN CALIFORNIA   (United States)

Author keywords

16S rRNA gene; Aquaculture; Clathria prolifera; Microciona prolifera

Indexed keywords

16S RRNA GENE; ACTINOBACTERIA; AQUACULTURE SYSTEMS; BACTERIAL ASSEMBLAGES; BACTERIAL COMMUNITY; BACTERIAL COMMUNITY COMPOSITION; BACTERIAL COMPOSITION; CHESAPEAKE BAY; CLATHRIA PROLIFERA; DENATURING GRADIENT GEL ELECTROPHORESIS; ENVIRONMENTAL SCIENCE; FLOWTHROUGH; IN-CELL; MICROBIAL COMMUNITIES; MICROCIONA PROLIFERA; MODEL SYSTEM; PROTEOBACTERIA; RECIRCULATIONS; SPECIES DIVERSITY; TEACHING TOOLS;

AQUACULTURE; BACTERIA; BACTERIOLOGY; CELL CULTURE; ELECTROPHORESIS; RNA; WASTEWATER TREATMENT;

AGRICULTURE;

PRIMER DNA; RNA 16S;

BACTERIUM; COMMUNITY COMPOSITION; COMPARATIVE STUDY; ELECTROKINESIS; GEL; MARICULTURE; MICROBIAL COMMUNITY; POPULATION DISTRIBUTION; RNA; SPONGE;

ANIMAL; ARTICLE; BACTERIUM; BIOLOGY; DNA SEQUENCE; GENETICS; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; SPONGE (PORIFERA); UNITED STATES;

ANIMALS; BACTERIA; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; DNA PRIMERS; MARYLAND; MOLECULAR SEQUENCE DATA; PHYLOGENY; PORIFERA; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

CHESAPEAKE BAY; NORTH AMERICA; UNITED STATES;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; CLATHRIA; CYANOBACTERIA; MICROCIONA PROLIFERA; PROTEOBACTERIA; SPIROCHAETALES;

EID: 70449533935     PISSN: 14362228     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10126-009-9192-3     Document Type: Article

References (52)

1. Azam F, Worden AZ (2004) Oceanography: microbes, molecules, and marine ecosystems. Science 303:1622-1624.
2. Bagby RM (1972) Formation and differentiation of the upper pinacoderm in reaggregation masses of the sponge Microciona prolifera (Ellis and Solander). J Exp Zool 180:217-225.
3. Bewley CA, Faulkner DJ (1998) Lithistid sponges: star performers or hosts to the stars. Angew Chem Int Ed 37:2162-2178.
4. Bewley CA, Holland ND, Faulkner DJ (1996) Two classes of metabolites from Theonella swinhoei are localized in distinct populations of bacterial symbionts. Experientia 52:716-722.
5. Capon RJ, Miller M, Rooney F (2000) Clathrins A-C: metabolites from a Southern Australian marine sponge, Clathria species. J Nat Prod 63:821-824.
6. Capon RJ, Miller M, Rooney F (2001) Mirabilin G: a new alkaloid from a southern Australian marine sponge, Clathria species. J Nat Prod 64:643-644.
7. Cragg GM, Newman DJ, Yang SS (2006) Natural product extracts of plant and marine origin having antileukemia potential. The NCI experience. J Nat Prod 69:488-498.
8. Der Marderosian AH (1970) Drugs from the sea-an overview. In: Youngken HW Jr (ed) Drugs from the sea proceedings 1969. Marine Technology Society, Washington, DC.
9. Faulkner DJ, Harper MK, Haygood MG, Salomon CE, Schmidt EW (2000) Symbiotic bacteria in sponges: sources of bioactive substances. In: Fusetani N (ed) Drugs from the sea. Karger, Basel, pp 107-119.
10. Fernandez-Busquets X, Gerosa D, Hess D, Burger MM (1998) Accumulation in marine sponge grafts of the mRNA encoding the main proteins of the cell adhesion system. J Biol Chem 273:29545-29553.
11. Ferris MJ, Muyzer G, Ward DM (1996) Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl Environ Microbiol 62:340-346.
12. Guerardel Y, Czeszak X, Sumanovski LT, Karamanos Y, Popescu O, Strecker G, Misevic GN (2004) Molecular fingerprinting of carbohydrate structure phenotypes of three porifera proteoglycan-like glyconectins. J Biol Chem 279:15591-15603.
13. Hart JB, Lill RE, Hichford SJH, Blunt JW, Munro MHG (2000) The halichondrins: chemistry, biology, supply and delivery. In: Fusetani N (ed) Drugs from the sea. Karger, Basel, pp 134-153.
14. Haygood MG, Schmidt EW, Davidson SK, Faulkner DJ (1999) Microbial symbionts of marine invertebrates: opportunities for microbial biotechnology. J Mol Microbiol Biotechnol 1:33-43.
15. Hentschel U, Hopke J, Horn M, Friedrich AB, Wagner M, Hacker J, Moore BS (2002) Molecular evidence for a uniform microbial community in sponges from different oceans. Appl Environ Microbiol 68:4431-4440.
16. Hentschel U, Fieseler L, Wehrl M, Gernert C, Steinert M, Hacker J, Horn M (2003) Microbial diversity of marine sponges. In: Müller WEG (ed) Sponges (Porifera). Springer, Berlin, pp 59-88.
17. Hill RA (2004a) Marine natural products. Ann Rep Prog Chem Sec B Org Chem 100:169-189.
18. Hill RT (2004b) Microbes from marine sponges: a treasure trove of biodiversity for natural products discovery. In: Bull AT (ed) Microbial diversity and bioprospecting. ASM, Washington, DC, pp 177-190.
19. Hooper JNA, van Soest RWM (eds) (2002) Systema Porifera: a guide to the classification of sponges. Kluwer Academic, New York.
20. Imhoff JF, Stohr R (2003) Sponge-associated bacteria: general overview and special aspects of bacteria associated with Halichondria panicea. Prog Mol Subcell Biol 37:35-57.
21. Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism. Academic, New York, pp 21-132.
22. Kaltenbach JC, Kuhns WJ, Simpson TL, Burger MM (1999) Intense concanavalin A staining and apoptosis of peripheral flagellated cells in larvae of the marine sponge Microciona prolifera: significance in relation to morphogenesis. Biol Bull 197:271-273.
23. Kobayashi J, Ishibashi M (1993) Bioactive metabolites of symbiotic marine microorganisms. Chem Rev 93:8305-8308.
24. Krug PJ (2006) Defense of benthic invertebrates against surface colonization by larvae: a chemical arms race. Prog Mol Subcell Biol 42:1-53.
25. Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York, pp 115-175.
26. Lee YK, Lee J-H, Lee HK (2001) Microbial symbiosis in marine sponges. J Microbiol 39:254-264.
27. Lippson AJ, Lippson RL (1997) Life in the Chesapeake Bay. The Johns Hopkins, Baltimore.
28. Litchfield C, Liaaen-Jensen S (1980) Carotenoids of the marine sponge Microciona prolifera. Comp Biochem Physiol B 66:359-366.
29. Mohamed NM, Enticknap JJ, Lohr JE, McIntosh SM, Hill RT (2008a) Changes in bacterial communities of the marine sponge Mycale laxissima on transfer into aquaculture. Appl Environ Microbiol 74:1209-1222.
30. Mohamed NM, Rao V, Hamann MT, Kelly M, Hill RT (2008b) Monitoring bacterial diversity of the marine sponge Ircinia strobilina upon transfer into aquaculture. Appl Environ Microbiol 74:4133-4143.
31. Müller WEG, Wimmer W, Schatton W, Böhm M, Batel R, Filic Z (1999) Initiation of an aquaculture of sponges for the sustainable production of bioactive metabolites in open systems: example, Geodia cydonium. Mar Biotechnol (NY) 1:569-579.
32. Munro MH, Blunt JW, Dumdei EJ, Hickford SJ, Lill RE, Li S, Battershill CN, Duckworth AR (1999) The discovery and development of marine compounds with pharmaceutical potential. J Biotechnol 70:15-25.
33. Newman DJ, Cragg GM (2004) Marine natural products and related compounds in clinical and advanced preclinical trials. J Nat Prod 67:1216-1238.
34. Newman DJ, Hill RT (2006) New drugs from marine microbes: the tide is turning. J Ind Microbiol Biotech 33:539-544.
35. Piel J (2006) Bacterial symbionts: prospects for the sustainable production of invertebrate-derived pharmaceuticals. Curr Med Chem 13:39-50.
36. Pitcher DG, Saunders NA, Owen RJ (1989) Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8:151-156.
37. Porter KG, Feig YS (1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25:943-948.
38. Proksch P (1994) Defensive roles for secondary metabolites from marine sponges and sponge-feeding nudibranchs. Toxicon 32:639-655.
39. Ruby E, Henderson B, McFall-Ngai M (2004) Microbiology: we get by with a little help from our (Little) friends. Science 303:1305-1307.
40. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425.
41. Schmidt EW, Obraztsova AY, Davidson SK, Faulkner DJ, Haygood MG (2000) Identification of the antifungal peptide-containing symbiont of the marine sponge Theonella swinhoei as a novel δ-proteobacterium, "Candidatus Entotheonella palauensis". Mar Biol 136:969-977.
42. Sliwka HR, Nokleby OW, Liaaen-Jensen S (1987) Animal carotenoids. 31. Structure elucidation of a sponge metabolite via mesylate elimination. Acta Chem Scand B 41:245-252.
43. Taylor MW, Schupp PJ, Dahllof I, Kjelleberg S, Steinberg PD (2004) Host specificity in marine sponge-associated bacteria, and potential implications for marine microbial diversity. Environ Microbiol 6:121-130.
44. Taylor MW, Schupp PJ, de Nys R, Kjelleberg S, Steinberg PD (2005) Biogeography of bacteria associated with the marine sponge Cymbastela concentrica. Environ Microbiol 7:419-433.
45. Taylor MW, Radax R, Steger D, Wagner M (2007) Sponge-associated microorganisms: evolution, ecology, and biotechnological potential. Microbiol Mol Biol Rev 71:295-347.
46. Tepsuporn S, Kaltenbach JC, Kuhns WJ, Burger MM, Fernandez-Busquets X (2003) Apoptosis in Microciona prolifera allografts. Biol Bull 205:199-201.
47. Vacelet J, Donadey C (1977) Electron microscope study of the association between some sponges and bacteria. J Exp Mar Biol Ecol 30:301-314.
48. Webster NS, Hill RT (2001) The culturable microbial community of the Great Barrier Reef sponge Rhopaloeides odorabile is dominated by an α-Proteobacterium. Mar Biol 138:843-851.
49. Webster NS, Wilson KJ, Blackall LL, Hill RT (2001) Phylogenetic diversity of bacteria associated with the marine sponge Rhopaloeides odorabile. Appl Environ Microbiol 67:434-444.
50. Webster NS, Negri AP, Munro MM, Battershill CN (2004) Diverse microbial communities inhabit Antarctic sponges. Environ Microbiol 6:288-300.
51. Wichels A, Würtz S, Döpke H, Schütt C, Gerdts G (2006) Bacterial diversity in the breadcrumb sponge Halichondria panicea (Pallas). FEMS Microb Ecol 56:102-118.
52. Wilkinson CR, Nowak M, Austin B, Colwell RR (1981) Specificity of bacterial symbionts in Mediterranean and Great Barrier Reef sponges. Microb Ecol 7:13-21.