Methylobacterium marchantiae sp. nov., a pinkpigmented, facultatively methylotrophic bacterium isolated from the thallus of a liverwort

International Journal of Systematic and Evolutionary Microbiology

Volumn 61, Issue 4, 2011, Pages 870-876

  Schauer, S ^a   Kampfer P ^b   Wellner, S ^b   Sproer C ^c   Kutschera, U ^a  

^a UNIVERSITY OF KASSEL   (Germany)

^b JUSTUS LIEBIG UNIVERSITY   (Germany)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; FATTY ACID; RNA 16S;

ARTICLE; BACTERIAL CELL; BACTERIAL MEMBRANE; BACTERIAL STRAIN; BACTERIUM ISOLATION; FIMBRIA; GENE SEQUENCE; LIVERWORT; METHYLOBACTERIACEAE; METHYLOBACTERIUM; METHYLOBACTERIUM ADHAESIVUM; METHYLOBACTERIUM FUJISAWAENSE; METHYLOBACTERIUM JEOTGALI; METHYLOBACTERIUM MARCHANTIAE; METHYLOBACTERIUM RADIOTOLERANS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; THALLUS;

BACTERIAL TYPING TECHNIQUES; CLUSTER ANALYSIS; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FIMBRIAE, BACTERIAL; HEPATOPHYTA; LOCOMOTION; METHYLOBACTERIUM; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); MARCHANTIA POLYMORPHA; MARCHANTIOPSIDA; METHYLOBACTERIUM; METHYLOBACTERIUM ADHAESIVUM; METHYLOBACTERIUM FUJISAWAENSE; NEGIBACTERIA;

EID: 79955433513     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.021915-0     Document Type: Article

References (45)

1. Austin, B. & Goodfellow, M. (1979). Pseudomonas mesophilica, a new species of pink bacteria isolated from leaf surfaces. Int J Syst Bacteriol 29, 373-378.
2. Burdon, K. L. (1946). Fatty material in bacteria and fungi revealed by staining dried, fixed slide preparations. J Bacteriol 52, 665-678.
3. Cashion, P., Holder-Franklin, M. A., McCully, J. & Franklin, M. (1977). A rapid method for the base ratio determination of bacterial DNA. Anal Biochem 81, 461-466.
4. Choi, J. H., Kim, J. H., Daniel, M. & Lebeault, J. M. (1989). Optimization of growth medium and poly-b-hydroxybutyric acid production from methanol in Methylobacterium organophilum. Kor J Appl Microbiol Bioeng 17, 392-396.
5. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
6. Delmotte, N., Knief, C., Chaffron, S., Innerebner, G., Roschitzki, B., Schlapbach, R., von Mering, C. & Vorholt, J. A. (2009). Community proteogenomics reveals insights into the physiology of phyllosphere bacteria. Proc Natl Acad Sci U S A 106, 16428-16433.
7. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
8. Green, P. N. (2006). Methylobacterium. In The Prokaryotes. A Handbook on the Biology of Bacteria, 3rd edn, vol. 5, pp. 257-265. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
9. Green, P. N. & Bousfield, I. J. (1982). A taxonomic study of some Gram-negative facultatively methylotrophic bacteria. J Gen Microbiol 128, 623-638.
10. Green, P. N. & Bousfield, I. J. (1983). Emendation of Methylobacterium Patt, Cole, and Hanson 1976; Methylobacterium rhodinum (Heumann 1962) comb. nov. corrig.; Methylobacterium radiotolerans (Ito and Iizuka 1971) comb. nov., corrig.; and Methylobacterium mesophilicum (Austin and Goodfellow 1979) comb. nov. Int J Syst Bacteriol 33, 875-877.
11. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95-98.
12. Heimbrook, M. E., Wang, W. L. & Campbell, G. (1989). Staining bacterial flagella easily. J Clin Microbiol 27, 2612-2615.
13. Holland, M. A. (1997). Methylobacterium and plants. Rec Res Dev Plant Physiol 1, 207-213.
14. Hornschuh, M., Grotha, R. & Kutschera, U. (2002). Epiphytic bacteria associated with the bryophyte Funaria hygrometrica: effects of Methylobacterium strains on protonema development. Plant Biol 4, 682-687.
15. Hornschuh, M., Grotha, R. & Kutschera, U. (2006). Moss-associated methylobacteria as phytosymbionts: an experimental study. Naturwissenschaften 93, 480-486.
16. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
17. Hüve, K., Christ,M. M., Kleist, E., Uerlings, R., Niinemets,Ü., Walter, A. & Wildt, J. (2007). Simultaneous growth and emission measurements demonstrate an interactive control of methanol release by leaf expansion and stomata. J Exp Bot 58, 1783-1793.
18. Idris, R. A., Kuffner, M., Bodrossy, L., Puschenreiter, M., Monchy, S., Wenzel, W. W. & Sessitsch, A. (2006). Characterization of Ni-tolerant methylobacteria associated with the hyperaccumulating plant Thlaspi goesingense and description of Methylobacterium goesingense sp. nov. Syst Appl Microbiol 29, 634-644.
19. Ivanova, E. G., Doronina, N. V., Shepeliakovskaia, A. O., Laman, A. G., Brovko, F. A. & Trotsenko, Iu. A. (2000). [Facultative and obligate aerobic methylobacteria synthesize cytokinins]. Mikrobiologiia 69, 764-769 (in Russian).
20. Ivanova, E. G., Doronina, N. V. & Trotsenko, Iu. A. (2001). [Aerobic methylobacteria are capable of synthesizing auxins]. Mikrobiologiia 70, 452-458 (in Russian).
21. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
22. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
23. Kato, Y., Asahara, M., Goto, K., Kasai, H. & Yokota, A. (2008). Methylobacterium persicinum sp. nov., Methylobacterium komagatae sp. nov., Methylobacterium brachiatum sp. nov., Methylobacterium tardum sp. nov. and Methylobacterium gregans sp. nov., isolated from freshwater. Int J Syst Evol Microbiol 58, 1134-1141.
24. Koenig, R. L., Morris, R. O. & Polacco, J. C. (2002). tRNA is the source of low-level trans-zeatin production in Methylobacterium spp. J Bacteriol 184, 1832-1842.
25. Kutschera, U. (2007). Plant-associated methylobacteria as co-evolved phytosymbionts: a hypothesis. Plant Signal Behav 2, 74-78.
26. Kutschera, U. & Koopmann, V. (2005). Growth in liverworts of the Marchantiales is promoted by epiphytic methylobacteria. Naturwissenschaften 92, 347-349.
27. Kutschera, U., Thomas, J. & Hornschuh, M. (2007). Cluster formation in liverwort-associated methylobacteria and its implications. Naturwissenschaften 94, 687-692.
28. Lee, S. W., Oh, H. W., Lee, K. H. & Ahn, T. Y. (2009). Methylobacterium dankookense sp. nov., isolated from drinking water. J Microbiol 47, 716-720.
29. Lindow, S. E. & Brandl, M. T. (2003). Microbiology of the phyllosphere. Appl Environ Microbiol 69, 1875-1883.
30. Madhaiyan, M., Poonguzhali, S., Kwon, S. W. & Sa, T. M. (2009). Methylobacterium phyllosphaerae sp. nov., a pink-pigmented, facultative methylotroph from the phyllosphere of rice. Int J Syst Evol Microbiol 59, 22-27.
31. McDonald, I. R., Kenna, E. M. & Murrell, J. C. (1995). Detection of methanotrophic bacteria in environmental samples with the PCR. Appl Environ Microbiol 61, 116-121
32. Nemecek-Marshall, M., MacDonald, R. C., Franzen, J. J., Wojciechowski, C. L. & Fall, R. (1995). Methanol emission from leaves. Enzymatic detection of gas-phase methanol and relation of methanol fluxes to stomatal conductance and leaf development. Plant Physiol 108, 1359-1368.
33. Ottow, J. C. G. (1975). Ecology, physiology, and genetics of fimbriae and pili. Annu Rev Microbiol 29, 79-108.
34. Patt, T. E., Cole, G. C., Bland, J. & Hanson, R. S. (1974). Isolation and characterization of bacteria that grow on methane and organic compounds as sole sources of carbon and energy. J Bacteriol 120, 955-964.
35. Patt, T. E., Cole, G. C. & Hanson, R. S. (1976). Methylobacterium, a new genus of facultatively methylotrophic bacteria. Int J Syst Bacteriol 26, 226-229.
36. Pitcher, D. G., Saunders, N. A. & Owen, R. J. (1989). Rapid extraction of bacterial genomic DNA with guanidium thiocyanate. Lett Appl Microbiol 8, 151-156.
37. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
38. Sato, K. (1978). Bacteriochlorophyll formation by facultative methylotrophs, Protaminobacter ruber and Pseudomonas AM 1. FEBS Lett 85, 207-210.
39. Schauer, S. & Kutschera, U. (2008). Methylotrophic bacteria on the surfaces of field-grown sunflower plants: a biogeographic perspective. Theory Biosci 127, 23-29.
40. Sy, A., Giraud, E., Jourand, P., Garcia, N., Willems, A., de Lajudie, P., Prin, Y., Neyra, M., Gillis, M. &other authors (2001). Methylotrophic Methylobacterium bacteria nodulate and fix nitrogen in symbiosis with legumes. J Bacteriol 183, 214-220.
41. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599.
42. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22, 4673-4680.
43. Weon, H.-Y., Kim, B.-Y., Joa, J.-H., Son, J.-A., Song, M.-H., Kwon, S.-W., Go, S.-J. & Yoon, S.-H. (2008). Methylobacterium iners sp. nov. and Methylobacterium aerolatum sp. nov., isolated from air samples in Korea. Int J Syst Evol Microbiol 58, 93-96.
44. Yurkov, V. V. & Beatty, J. T. (1998). Aerobic anoxygenic phototrophic bacteria. Microbiol Mol Biol Rev 62, 695-724.
45. Ziemke, F., Höfle, M. G., Lalucat, J. & Rosselló-Mora, R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48, 179-186.