Introgressive hybridization of redband trout in the upper McCloud River watershed

Transactions of the American Fisheries Society

Volumn 139, Issue 1, 2010, Pages 201-213

  Simmons, Rachel E ^a   Lavretsky, Phil ^a   May, Bernie ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CONSERVATION GENETICS; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; HYBRIDIZATION; INBREEDING; INTROGRESSION; MIGRATION; MOLECULAR ANALYSIS; PHYLOGENETICS; POLYMORPHISM; SALMONID; SPECIES CONSERVATION; SUBSPECIES; WATERSHED;

CALIFORNIA; MCCLOUD BASIN; UNITED STATES;

ONCORHYNCHUS MYKISS; SALMONIDAE;

EID: 79955083769     PISSN: 00028487     EISSN: 15488659     Source Type: Journal    
DOI: 10.1577/T08-245.1     Document Type: Article

References (64)

1. Allendorf, F. W. 2003. Introduction: population biology, evolution, and control of invasive species. Conservation Biology 17:24-30.
2. Allendorf, F. W., R. F. Leary, N. P. Hitt, K. L. Knudsen, L. L. Lundquist, and P. Spruell. 2004. Intercrosses and the U.S. Endangered Species Act: should hybridized populations be included as westslope cutthroat trout? Conservation Biology 18:1203-1213.
3. Allendorf, F. W., R. F. Leary, P. Spruell, and J. K. Wenburg. 2001. The problems with hybrids: setting conservation guidelines. Trends in Ecology and Evolution 16(11):613-622.
4. Aparicio, E., E. García-Berthou, R. M. Araguas, P. Martínez, and J. L. García-Marín. 2005. Body pigmentation pattern to assess introgression by hatchery stocks in native Salmo trutta from Mediterranean streams. Journal of Fish Biology 67:931-949.
5. Bacon, M., P. Brouha, M. Rode, and C. Staley. 1980. Redband trout (Salmo sp.): USFS Shasta-Trinity National Forest, California, comprehensive habitat management plan. U.S. Forest Service, Redding, California.
6. Bagley, M. J., and G. A. E. Gall. 1998. Mitochondrial and nuclear DNA sequence variability among populations of rainbow trout (Oncorhynchus mykiss). Molecular Ecology 7(8):945-961.
7. Barilani, M., S. Deregnaucourte, S. Gallego, L. Galli, N. Mucci, R. Piomboc, M. Puigcerverd, S. Rimondi, J. D. Rodríguez-Teijeiro, S. Spanòc, and E. Randi. 2005. Detecting hybridization in wild (Coturnix c. coturnix) and domesticated (Coturnix c. japonica) quail populations. Biological Conservation 126:445-455.
8. Behnke, R. J. 1992. Native trout of western North America. American Fisheries Society, Monograph 6, Bethesda, Maryland.
9. Behnke, R. J. 2002. Trout and salmon of North America. Free Press, New York.
10. Berg, W. J. 1987. Evolutionary genetics of rainbow trout. Doctoral dissertation. University of California, Davis.
11. Busack, C. A., and G. A. E. Gall. 1980. Ancestry of artificially propagated California rainbow trout strains. California Fish and Game 66(1):17-24.
12. CDFG (California Department of Fish and Game). 2008. California Department of Fish and Game catchable trout planting schedule for region 1-northern. Available: www.dfg.ca.gov/. (October 2008).
13. Campton, D. E., and L. R. Kaeding. 2005. Westslope cutthroat trout, hybridization, and the U.S. Endangered Species Act. Conservation Biology 19:1323-1325.
14. Campton, D. E., and F. M. Utter. 1985. Natural hybridization between steelhead trout (Salmo gairdneri) and coastal cutthroat trout (Salmo clarki clarki) in two Puget Sound streams. Canadian Journal of Fisheries and Aquatic Sciences 42:110-119.
15. Cegelski, C. C., L. P. Waits, and N. J. Anderson. 2003. Assessing population structure and gene flow in Montana wolverines (Gulo gulo) using assignment-based approaches. Molecular Ecology 12(11):2907-2918.
16. Choisy, M., P. Franck, and J. M. Cornuet. 2004. Estimating admixture proportions with microsatellites: comparison of methods based on simulated data. Molecular Ecology 13(4):955-968.
17. Cordes, J. F., M. Stephens, M. A. Blumberg, and B. May. 2006. Identifying introgressive hybridization in native populations of California golden trout based on molecular markers. Transactions of the American Fisheries Society 135:110-128.
18. Dowling, T. E., and M. R. Childs. 1992. Impact of hybridization on a threatened trout of the southwestern United States. Conservation Biology 6:355-364.
19. Elliott, J., and R. W. Layton. 2004. Lahontan cutthroat trout species management plan for the upper Humboldt River drainage basin. Nevada Department of Wildlife, Reno.
20. Evanno, G., S. Regnaut, and J. Goudet. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14:2611-2620.
21. Gall, G. A. E., and B. May. 1997. Trout of the Kern River basin: a genetic analysis of Little Kern River and Golden Trout Creek populations. Report to the California Department of Fish and Game, Threatened Trout Committee, Sacramento.
22. Gold, J. R. 1977. Systematics of western North American trout (Salmo), with notes on the redband trout of Sheepheaven Creek, California. Canadian Journal of Zoology 55(11):1858-1873.
23. Gunnell, K., M. K. Tada, F. A. Hawthorne, E. R. Keeley, and M. B. Ptacek. 2008. Geographic patterns of introgressive hybridization between native Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri) and introduced rainbow trout (O. mykiss) in the South Fork of the Snake River watershed, Idaho. Conservation Genetics 9:49-64.
24. Hartl, D. L., and A. G. Clark. 1997. Principles of population genetics, 3rd edition. Sinauer Associates, Sunderland, Massachusetts.
25. Hedrick, P. W. 1995. Gene flow and genetic restoration: the Florida panther as a case study. Conservation Biology 9:996-1007.
26. Jakobsson, M., and N. A. Rosenberg. 2007. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23(14):1801-1806.
27. Jensen, A. B., K. A. Palmer, J. J. Boomsma, and B. V. Pedersen. 2005. Varying degrees of Apis mellifera ligustica introgression in protected populations of the black honeybee, Apis mellifera mellifera, in northwest Europe. Molecular Ecology 14:93-106.
28. Matala, A. P., S. Marx, and T. G. Wise. 2008. A genetically distinct wild redband trout (>Oncorhynchus mykiss gairdneri) population in Crane Prairie Reservoir, Oregon, persists despite extensive stocking of hatchery rainbow trout (O. m. irideus). Conservation Genetics 9:1643-1652.
29. Morin, P. A., G. Luikart, and R. K. Wayne. and the SNP workshop group. 2004. SNPs in ecology, evolution, and conservation. Trends in Ecology and Evolution 19(4):208-216.
30. Moyle, P. B. 1996. Status of aquatic habitat types, volume I. Assessments and scientific basis for management options. Sierra Nevada Ecosystem Project, Final report to Congress, Center for Water and Wildlife Resources, University of California, Davis.
31. Moyle, P. B., R. M. Yoshiyama, J. E. Williams, and E. D. Wikramanayake. 1995. Fish species of special concern in California, 2nd edition. Prepared for the California Department of Fish and Game, Rancho Cordova.
32. Muhlfeld, C. C., S. T. Kalinowski, T. E. McMahon, M. L. Taper, S. Painter, R. F. Leary, and F. W. Allendorf. 2009. Hybridization rapidly reduces fitness of a native trout in the wild. Biology Letters 5(3):328-331.
33. Nielsen, J. L., K. D. Crow, and M. C. Fountain. 1999. Microsatellite diversity and conservation of a relic trout population: McCloud River redband trout. Molecular Ecology 8(Supplement 1):S129-S142.
34. O'Brien, S. J., and E. Mayr. 1991. Bureaucratic mischief: recognizing endangered species and subspecies. Science 251:1187-1190.
35. Ostberg, C. O., S. L. Slatton, and R. J. Rodriguez. 2004. Spatial partitioning and asymmetric hybridization among sympatric coastal steelhead trout (Oncorhynchus mykiss irideus), coastal cutthroat trout (O. clarki clarki), and interspecific hybrids. Molecular Ecology 13:2773-2788.
36. Porath, M. T., and J. L. Nielsen. 2003. Evidence of sexually dimorphic introgression in Pinaleno Mountain Apache trout. North American Journal of Fisheries Management 23:172-180.
37. Pritchard, J. K., M. Stephens, and P. Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155(3):945-959.
38. Pritchard, V. L., K. Jones, and D. E. Cowley. 2007. Estimation of introgression in cutthroat trout populations using microsatellites. Conservation Genetics 8:1311-1329.
39. Randi, E., and V. Lucchini. 2002. Detecting rare introgression of domestic dog genes into wild wolf (Canis lupus) populations by Bayesian admixture analyses of microsatellite variation. Conservation Genetics 3:31-45.
40. Randi, E., V. Lucchini, M. F. Christensen, N. Mucci, S. M. Funk, G. Dolf, and V. Loeschcke. 2001. Mitochondrial DNA variability in Italian and East European wolves: detecting the consequences of small population size and hybridization. Conservation Biology 14(2):464-473.
41. Raymond, M., and F. Rousset. 1995. GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86(3):248-249.
42. Rosenberg, N. A. 2004. Distruct: a program for the graphical display of population structure. Molecular Ecology Notes 4:137-138.
43. Rosenberg, N. A., M. L. Lei, R. Ward, and J. K. Pritchard. 2003. Informativeness of genetic markers for inference of ancestry. American Journal of Human Genetics 73:1402-1422.
44. Rubidge, E. M., and E. B. Taylor. 2004. Hybrid zone structure and the potential role of selection in hybridizing populations of native westslope cutthroat trout (Oncorhynchus clarki lewisi) and introduced rainbow trout (O. mykiss). Molecular Ecology 13:3735-3749.
45. Sacks, B. N., B. R. Mitchell, C. L. Williams, and H. B. Ernest. 2005. Coyote movements and social structure along a cryptic population genetic subdivision. Molecular Ecology 14:1241-1249.
46. Sanz, N., R. M. Araguas, R. Fernández, M. Vera, and J. García-Marín. 2009. Efficiency of markers and methods for detecting hybrids and introgression in stocked populations. Conservation Genetics 10:225-236.
47. Sanz, N., M. Cortey, C. Pia, and J. L. García-Marín. 2005. Hatchery introgression blurs ancient hybridization between brown trout (Salmo trutta) lineages as indicated by complementary allozymes and mtDNA markers. Biological Conservation 130(2):278-289.
48. Seiler, S. M., and E. R. Keeley. 2007. Morphological and swimming stamina differences between Yellowstone cutthroat trout (Oncorhynchus clarkii bouvieri), rainbow trout (Oncorhynchus mykiss), and their hybrids. Canadian Journal of Fisheries and Aquatic Sciences 64:127-135.
49. Shriver, M. D., M. W. Smith, L. Jin, A. Marcini, J. M. Akey, R. Deka, and R. E. Ferrell. 1997. Ethnic affiliation estimation by use of population-specific DNA markers. American Journal of Human Genetics 60(4):957-64.
50. Smith, M. W., and coauthors. 2001. Markers for mapping by admixture linkage disequilibrium in African American and Hispanic populations. American Journal of Human Genetics 69(5):1080-1094.
51. Sprowles, A. E., M. R. Stephens, N. W. Clipperton, and B. P. May. 2006. Fishing for SNPs: a targeted-locus approach for single nucleotide polymorphism discovery in rainbow trout. Transactions of the American Fisheries Society 135:1698-1721.
52. Stephens, M. R. 2007. Systematics, genetics, and conservation of golden trout. University of California, Davis.
53. Stephens, M. R., N. W. Clipperton, and B. May. 2009. Subspecies-informative SNP assays for evaluating introgression between native golden trout and introduced rainbow trout. Molecular Ecology Resources 9:339-343.
54. Stream Wise. 2001. Tate Creek-McCloud district stream assessment. Report prepared for the U.S. Forest Service, Vallejo, California.
55. Susnik, S., P. Berrebi, P. Dovc, M. M. Hansen, and A. Snoj. 2004. Genetic introgression between wild and stocked salmonids and the prospects for using molecular markers in population rehabilitation: the case of the Adriatic grayling (Thymallus thymallus L. 1785). Heredity 93:273-282.
56. USFWS (U.S. Fish and Wildlife Service). 1994. Endangered and threatened wildlife and plants: animal candidate review for listing as endangered or threatened species. Federal Register 219:(15 November 1994):58982.
57. USFWS (U.S. Fish and Wildlife Service). 1996. Proposed policy on the treatment of intercrosses and intercross progeny (the issue of "hybridization"): proposed rule. Federal Register 61:(7 February 1996):4710-4713.
58. USFWS (U.S. Fish and Wildlife Service). 2000. Endangered and threatened wildlife and plants: notice of reclassification of nine candidate taxa. Federal Register 65(204):(20 March 2000):63044-63045.
59. Wales, J. H. 1939. General report on investigation of the McCloud River drainage in 1938. California Fish and Game 25:272-309.
60. Wang, J. 2003. Maximum likelihood estimation of admixture proportions from genetic data. Genetics 164:747-765.
61. Wirtz, P. 1999. Mother species-father species: unidirectional hybridization in animals with female choice. Animal Behaviour 58:1-12.
62. Wolf, D. E., N. Takebayashi, and L. H. Rieseberg. 2001. Predicting the risk of extinction through hybridization. Conservation Biology 15(4):1039-1053.
63. Yang, N., H. Li, L. Criswell, M. Gregersen, R. Alarcon-Riquelme, R. Kittles, R. Shigeta, G. Silva, P. Patel, J. Belmont, and M. Seldin. 2005. Examination of ancestry and ethnic affiliation using highly informative diallelic DNA markers: application to diverse and admixed populations and implications for clinical epidemiology and forensic medicine. Human Genetics 118(3-4): 382-392.
64. Young, W. P., C. O. Ostberg, P. Keim, and G. H. Thorgaard. 2001. Genetic characterization of hybridization and introgression between anadromous rainbow trout (Oncorhynchus mykiss irideus) and coastal cutthroat trout (O. clarki clarki). Molecular Ecology 10(4):921-930.