A framework on surface-based connectivity quantification for the human brain

Journal of Neuroscience Methods

Volumn 197, Issue 2, 2011, Pages 324-332

  Huang, Hao ^a,b   Prince, Jerry L ^b   Mishra, Virendra ^a   Carass, Aaron ^b   Landman, Bennett ^b   Park, Denise C ^c   Tamminga, Carol ^a   King, Richard ^d   Miller, Michael I ^b   van Zijl, Peter C M ^b,e   Mori, Susumu ^b,e  

^a UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^b JOHNS HOPKINS UNIVERSITY   (United States)

^c UNIVERSITY OF TEXAS AT DALLAS   (United States)

^d UNIVERSITY OF TEXAS SOUTHWESTERN MEDICAL CENTER   (United States)

^e KENNEDY KRIEGER INSTITUTE   (United States)

Author keywords

Connectivity; Cortical surface; DTI; Quantification; Tractography

Indexed keywords

ADULT; ARCUATE FASCICULUS; ARTICLE; BRAIN CORTEX; BRAIN FUNCTION; FEMALE; HUMAN; HUMAN EXPERIMENT; MALE; NORMAL HUMAN; PRIORITY JOURNAL; UNCINATE FASCICULUS;

ADULT; ARCUATE NUCLEUS; BRAIN MAPPING; CEREBRAL CORTEX; DIFFUSION TENSOR IMAGING; FEMALE; HUMANS; MALE; MODELS, NEUROLOGICAL; NERVE NET; SCHIZOPHRENIA; SURFACE PROPERTIES;

EID: 79955034355     PISSN: 01650270     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jneumeth.2011.02.017     Document Type: Article

References (37)

1. Basser P.J., Pajevic S., Pierpaoli C., Duda J., Aldroubi A. In vivo fiber tractography using DT-MRI data. Magn Reson Med 2000, 44:625-632.
2. Behrens T.E.J., Woolrich M.W., Jenkinson M., Johansen-Berg H., Nunes R.G., Clare S., et al. Characterization and propagation of uncertainty in diffusion-weighted MR imaging. Magn Reson Med 2003, 50:1077-1088.
3. Behrens T.E.J., Johansen-Berg H., Woolrich M.W., Smith S.M., Wheeler-Kingshott C.A.M., Boulby P.A., et al. Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nat Neurosci 2003, 6:750-757.
4. Behrens T.E.J., Johansen-Berg H., Jbabdi S., Rushworth M.F.S., Woolrich M.W. Probabilistic diffusion tractography with multiple fibre orientations: What can we gain?. Neuroimage 2007, 34:144-155.
5. Catani M., Howard R.J., Pajevic S., Jones D.K. Virtual in vivo interactive dissection of white matter fasciculi in the human brain. Neuroimage 2002, 17:77-94.
6. Catani M., ffytche D.H. The rises and falls of disconnection syndromes. Brain 2005, 128:2224-2239.
7. Conturo T.E., Lori N.F., Cull T.S., Akbudak E., Snyder A.Z., Shimony J.S., et al. Tracking neuronal fiber pathways in the living human brain. Proc Natl Acad Sci USA 1999, 96:10422-10427.
8. Desikan R.S., Segonne F., Fischl B., Quinn B.T., Dickerson B.C., Blacker D., et al. An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage 2006, 31:968-980.
9. Dice L.R. Measures of the amount of ecologic association between species. Ecology 1945, 26:297-302.
10. Douaud G., Smith S., Jenkinson M., Behrens T., Johansen-Berg H., Vickers J., et al. Anatomically related grey and white matter abnormalities in adolescent-onset schizophrenia. Brain 2007, 130:2375-2386.
11. Fischl B., van der Kouwe A., Destrieux C., Halgren E., Segonne F., Salat D.H., et al. Automatically parcellating the human cerebral cortex. Cereb Cortex 2004, 14:11-22.
12. Gong G., He Y., Concha L., Lebel C., Gross D.W., Evans A.C., et al. Mapping anatomical connectivity patterns of human cerebral cortex using in vivo diffusion tensor imaging tractography. Cereb Cortex 2009, 19:524-536.
13. Hagmann P., Cammoun L., Gigandet X., Meuli R., Honey C.J., Wedeen V.J., et al. Mapping the structural core of human cerebral cortex. PLoS Biol 2008, 6:e159.
14. Han X., Pham D.L., Tosun D., Rettmann M.E., Xu C., Prince J.L. CRUISE: cortical reconstruction using implicit surface evolution. Neuroimage 2004, 23:997-1012.
15. Hua K., Oishi K., Zhang J., Wakana S., Yoshioka T., Zhang W., et al. Mapping of functional areas in the human cortex based on connectivity through association tracts. Cereb Cortex 2009, 19:1889-1895.
16. Huang H., Zhang J., Jiang H., Wakana S., Poetscher L., Miller M.I., et al. DTI tractography based parcellation of white matter: application to the mid-sagittal morphology of corpus callosum. Neuroimage 2005, 26:195-205.
17. Huang H., Ceritoglu C., Li X., Qiu A., Miller M.I., van Zijl P.C.M., et al. Correction of B0 susceptibility induced distortion in diffusion-weighted images using large-deformation diffeomorphic metric mapping. Magn Reson Imaging 2008, 26:1294-1302.
18. Huang H., Prince J.L., Carass A., Landman B., van Zijl P.C., Mori S. Probabilistic corticocortical connectivity maps of human brain based on DTI tractography and cortical parcellation. Proceedings of ISMRM 2009.
19. Jones D.K., Horsfield M.A., Simmons A. Optimal strategies for measuring diffusin in anisotropic systems by magnetic resonance imaging. Magn Reson Med 1999, 42:515-525.
20. Jones D.K., Simmons A., Williams S.C., Horsfield M.A. Non-invasive assessment of axonal fiber connectivity in the human brain via diffusion tensor MRI. Magn Reson Med 1999, 42:37-41.
21. Mesulam M. Imaging connectivity in the human cerebral cortex: the next frontier?. Ann Neurol 2005, 57:5-7.
22. Mesulam M. Representation, inference, and transcendent encoding in neurocognitive networks of the human brain. Ann Neurol 2008, 64:367-378.
23. Miller M.I., Trouve A., Younes L. On the metrics and euler-lagrange equations of computational anatomy. Annu Rev Biomed Eng 2002, 4:375-405.
24. Mishra V.R., Fan X., Huang H. Systematic assessment of effects of noise and resolution on metrics of DTI tractography. Proceedings of ISMRM 2010.
25. Mori S., Crain B.J., Chacko V.P., van Zijl P.C. Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann Neurol 1999, 45:265-269.
26. Mori S., Kaufmann W.E., Davatzikos C., Stieltjes B., Amodei L., Fredericksen K., et al. Imaging coritcal association tracts in human brain. Magn Reson Med 2002, 47:215-223.
27. Phillips O.R., Nuechterlein K.H., Clark K.A., Hamilton L.S., Asarnow R.F., Hageman N.S., et al. Fiber tractography reveals disruption of temporal lobe white matter tracts in schizophrenia. Schizophr Res 2009, 107:30-38.
28. Rosenberger G., Kubicki M., Nestor P.G., Connor E., Bushell G.B., Markant D., et al. Age-related deficits in fronto-temporal connections in schizophrenia: a diffusion tensor imaging study. Schizophr Res 2008, 102:181-188.
29. Schmahmann J.D., Pandya D.N. Fiber pathways of the brain 2006, Oxford Univ. Press, USA.
30. Shen D., Davatzikos C. HAMMER: hierarchical attribute matching mechanism for elastic registration. IEEE Trans Med Imaging 2002, 21:1421-1439.
31. Szeszko P.R., Ardekani B.A., Ashtari M., Kumra S., Robinson D.G., Sevy S., et al. White matter abnormalities in first-episode schizophrenia or schizoaffective disorders: a diffusion tensor imaging study. Am J Psychiatry 2005, 162:602-605.
32. Tuch D.S., Reese T.G., Wiegell M.R., Wedeen V.J. Diffusion MRI of complex neural architecture. Neuron 2003, 40:885-895.
33. Wakana S., Jiang H., Nagae-Poetscher L.M., van Zijl P.C.M., Mori S. Fiber tract-based atlas of human white matter anatomy. Radiology 2004, 230:77-87.
34. Wakana S., Caprihan A., Panzenboeck M.M., Fallon J.H., Perry M., Gollub R.L., et al. Reproducibility of quantitative tractography methods applied to cerebral white matter. Neuroimage 2007, 36:630-644.
35. Wan J., Carass A., Prince J.L. Automated reliable labeling of the cortical surface. Proc. Int'l Symp Biomed Imag (ISBI) 2008, 440-443.
36. Wedeen V.J., Hagmann P., Tseng W.Y., Reese T.G., Weisskoff R.M. Mapping complex tissue architecture with diffusion spectrum magnetic resonance imaging. Magn Reson Med 2005, 54:1377-1386.
37. Woods R.P., Grafton S.T., Holmes C.J., Cherry S.R., Mazziotta J.C. Automated image registration: I. General methods and intrasubject, intramodality validation. J Comput Assist Tomogr 1998, 22:139-152.