메뉴 건너뛰기




Volumn 408, Issue 4, 2011, Pages 670-683

Small-angle X-ray scattering study of a rex family repressor: Conformational response to NADH and NAD+ binding in solution

Author keywords

adaptation; redox poise; redox sensing; transcriptional regulation

Indexed keywords

DNA; REDUCED NICOTINAMIDE ADENINE DINUCLEOTIDE; REX PROTEIN;

EID: 79955031175     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2011.02.050     Document Type: Article
Times cited : (18)

References (25)
  • 1
    • 11144250804 scopus 로고    scopus 로고
    • Tuberculosis - Metabolism and respiration in the absence of growth
    • DOI 10.1038/nrmicro1065
    • Boshoff H.I., and Barry C.E. Tuberculosis - metabolism and respiration in the absence of growth Nat. Rev. Microbiol. 3 2005 70 80 (Pubitemid 40028470)
    • (2005) Nature Reviews Microbiology , vol.3 , Issue.1 , pp. 70-80
    • Boshoff, H.I.M.1    Barry III, C.E.2
  • 2
    • 0344851717 scopus 로고    scopus 로고
    • Oxygen Regulates Invasiveness and Virulence of Group B Streptococcus
    • DOI 10.1128/IAI.71.12.6707-6711.2003
    • Johri A.K., Padilla J., Malin G., and Paoletti L.C. Oxygen regulates invasiveness and virulence of group B Streptococcus Infect. Immun. 71 2003 6707 6711 (Pubitemid 37475297)
    • (2003) Infection and Immunity , vol.71 , Issue.12 , pp. 6707-6711
    • Johri, A.K.1    Padilla, J.2    Malin, G.3    Paoletti, L.C.4
  • 3
    • 9444239308 scopus 로고    scopus 로고
    • Bacterial redox sensors
    • DOI 10.1038/nrmicro1022
    • Green J., and Paget M.S. Bacterial redox sensors Nat. Rev. Microbiol. 2 2004 954 966 (Pubitemid 39562534)
    • (2004) Nature Reviews Microbiology , vol.2 , Issue.12 , pp. 954-966
    • Green, J.1    Paget, M.S.2
  • 4
    • 0141737064 scopus 로고    scopus 로고
    • + redox poise in Streptomyces coelicolor A3(2)
    • DOI 10.1093/emboj/cdg453
    • + redox poise in Streptomyces coelicolor A3(2) EMBO J. 22 2003 4856 4865 (Pubitemid 37162921)
    • (2003) EMBO Journal , vol.22 , Issue.18 , pp. 4856-4865
    • Brekasis, D.1    Paget, M.S.B.2
  • 5
    • 77952821682 scopus 로고    scopus 로고
    • A redox sensing mechanism by a Rex-family repressor is involved in the regulation of anaerobic gene expression in Stapylococcus aureus
    • Pagels M., Fuchs S., Pané-Farré S., Kohler C., Menschner L., and Hecker M. A redox sensing mechanism by a Rex-family repressor is involved in the regulation of anaerobic gene expression in Stapylococcus aureus Mol. Microbiol. 76 2010 1142 1161
    • (2010) Mol. Microbiol. , vol.76 , pp. 1142-1161
    • Pagels, M.1    Fuchs, S.2    Pané-Farré, S.3    Kohler, C.4    Menschner, L.5    Hecker, M.6
  • 6
    • 0014748513 scopus 로고
    • Fluorimetric technique for monitoring changes in the level of reduced nicotinaminde nucleotides in continuous cultures of microorganisms
    • Harrison D.E., and Chance B. Fluorimetric technique for monitoring changes in the level of reduced nicotinaminde nucleotides in continuous cultures of microorganisms Appl. Microbiol. 19 1970 446 450
    • (1970) Appl. Microbiol. , vol.19 , pp. 446-450
    • Harrison, D.E.1    Chance, B.2
  • 7
    • 27144540194 scopus 로고    scopus 로고
    • Coordinated patterns of cytochrome bd and lactate dehydrogenase expression in Bacillus subtilis
    • DOI 10.1099/mic.0.28124-0
    • Larsson J.T., Rogstam A., and von Wachenfeldt C. Coordinated patterns of cytochrome bd and lactate dehydrogenase expression in Bacillus subtilis Microbiology 151 2005 3323 3335 (Pubitemid 41488915)
    • (2005) Microbiology , vol.151 , Issue.10 , pp. 3323-3335
    • Larsson, J.T.1    Rogstam, A.2    Von Wachenfeldt, C.3
  • 8
    • 0032415869 scopus 로고    scopus 로고
    • Cytochrome bd biosynthesis in Bacillus subtilis: Characterization of the cydABCD operon
    • Winstedt L., Yoshida K., Fujita Y., and von Wachenfeldt C. Cytochrome bd biosynthesis in Bacillus subtilis: Characterization of the cydABCD operon J. Bacteriol. 180 1998 6571 6580 (Pubitemid 29006071)
    • (1998) Journal of Bacteriology , vol.180 , Issue.24 , pp. 6571-6580
    • Winstedt, L.1    Yoshida, K.-I.2    Fujita, Y.3    Von Wachenfeldt, C.4
  • 9
    • 0015834475 scopus 로고
    • Comparison of super-secondary structures in proteins
    • Rao S., and Rossmann M. Comparison of super-secondary structures in proteins J. Mol. Biol. 76 1973 241 256
    • (1973) J. Mol. Biol. , vol.76 , pp. 241-256
    • Rao, S.1    Rossmann, M.2
  • 10
    • 11844285686 scopus 로고    scopus 로고
    • X-ray structure of a Rex-family repressor/NADH complex insights into the mechanism of redox sensing
    • DOI 10.1016/j.str.2004.10.012, PII S0969212604003867
    • Sickmier E.A., Brekasis D., Paranawithana S., Bonanno J.B., Paget M.S., Burley S.K., and Kielkopf C.L. X-ray structure of a rex-family repressor/NADH complex insights into the mechanism of redox sensing Structure 13 2005 43 54 (Pubitemid 40092473)
    • (2005) Structure , vol.13 , Issue.1 , pp. 43-54
    • Sickmier, E.A.1    Brekasis, D.2    Paranawithana, S.3    Bonanno, J.B.4    Paget, M.S.B.5    Burley, S.K.6    Kielkopf, C.L.7
  • 11
    • 33846202958 scopus 로고    scopus 로고
    • Crystal structure of TTHA1657 (AT-Rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 A° resolution
    • DOI 10.1002/prot.21222
    • Nakamura A., Sosa A., Komori H., Kita A., and Miki K. Crystal structure of TTHA1657 (AT-rich DNA-binding protein; p25) from Thermus thermophilus HB8 at 2.16 Å resolution Proteins: Struct. Funct. Bioinformatics 66 2007 755 759 (Pubitemid 46106780)
    • (2007) Proteins: Structure, Function and Genetics , vol.66 , Issue.3 , pp. 755-759
    • Nakamura, A.1    Sosa, A.2    Komori, H.3    Kita, A.4    Miki, K.5
  • 12
    • 47249112605 scopus 로고    scopus 로고
    • Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex
    • DOI 10.1111/j.1365-2958.2008.06295.x
    • Wang E., Bauer M.C., Rogstam A., Linse S., Logan D.T., and von Wachenfeldt C. Structure and functional properties of the Bacillus subtilis transcriptional repressor Rex Mol. Microbiol. 69 2008 466 478 (Pubitemid 351988017)
    • (2008) Molecular Microbiology , vol.69 , Issue.2 , pp. 466-478
    • Wang, E.1    Bauer, M.C.2    Rogstam, A.3    Linse, S.4    Logan, D.T.5    Von Wachenfeldt, C.6
  • 14
    • 62649139615 scopus 로고    scopus 로고
    • DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering
    • Franke D., and Svergun D.I. DAMMIF, a program for rapid ab-initio shape determination in small-angle scattering J. Appl. Crystallogr. 42 2009 342 346
    • (2009) J. Appl. Crystallogr. , vol.42 , pp. 342-346
    • Franke, D.1    Svergun, D.I.2
  • 15
    • 0037701585 scopus 로고    scopus 로고
    • Uniqueness of ab-initio shape determination in small-angle scattering
    • Volkov V.V., and Svergun D.I. Uniqueness of ab-initio shape determination in small-angle scattering J. Appl. Crystallogr. 36 2003 860 864
    • (2003) J. Appl. Crystallogr. , vol.36 , pp. 860-864
    • Volkov, V.V.1    Svergun, D.I.2
  • 16
    • 23244455562 scopus 로고    scopus 로고
    • Global rigid body modeling of macromolecular complexes against small-angle scattering data
    • DOI 10.1529/biophysj.105.064154
    • Petoukhov M.V., and Svergun D.I. Global rigid body modeling of macromolecular complexes against small-angle scattering data Biophys. J. 89 2005 1237 1250 (Pubitemid 41099005)
    • (2005) Biophysical Journal , vol.89 , Issue.2 , pp. 1237-1250
    • Petoukhov, M.V.1    Svergun, D.I.2
  • 18
    • 17644365489 scopus 로고    scopus 로고
    • Structural features of thermozymes
    • DOI 10.1016/j.biotechadv.2005.01.002
    • Li W.F., Zhou X.X., and Lu P. Structural features of thermozymes Biotechnol. Adv. 23 2005 271 281 (Pubitemid 40560880)
    • (2005) Biotechnology Advances , vol.23 , Issue.4 , pp. 271-281
    • Li, W.F.1    Zhou, X.X.2    Lu, P.3
  • 19
    • 18744405663 scopus 로고    scopus 로고
    • Stepwise adaptations of citrate synthase to survival at life's extremes: From psychrophile to hyperthermophile
    • DOI 10.1046/j.1432-1033.2002.03344.x
    • Bell G.S., Russell R.J., Connaris H., Hough D.W., Danson M.J., and Taylor G.L. Stepwise adaptations of citrate synthase to survival at life's extremes. From psychrophile to hyperthermophile Eur. J. Biochem. 269 2002 6250 6260 (Pubitemid 35461838)
    • (2002) European Journal of Biochemistry , vol.269 , Issue.24 , pp. 6250-6260
    • Bell, G.S.1    Russell, R.J.M.2    Connaris, H.3    Hough, D.W.4    Danson, M.J.5    Taylor, G.L.6
  • 20
    • 0036568335 scopus 로고    scopus 로고
    • Comparative structural analysis of psychrophilic and meso- and thermophilic enzymes
    • DOI 10.1002/prot.10084
    • Gianese G., Bossa F., and Pascarella S. Comparative structural analysis of psychrophilic and meso- and thermophilic enzymes Proteins: Struct. Funct. Bioinformatics 47 2002 236 249 (Pubitemid 34263336)
    • (2002) Proteins: Structure, Function and Genetics , vol.47 , Issue.2 , pp. 236-249
    • Gianese, G.1    Bossa, F.2    Pascarella, S.3
  • 22
    • 0026910457 scopus 로고
    • Determination of the regularization parameter in indirect-transform methods using perceptual criteria
    • DOI 10.1107/S0021889892001663
    • Svergun D.I. Determination of the regularization parameter in indirect-transform methods using perceptual criteria J. Appl. Cryst. 25 1992 495 503 (Pubitemid 23564996)
    • (1992) Journal of Applied Crystallography , vol.25 , Issue.PART 4 , pp. 495-503
    • Svergun, D.I.1
  • 23
    • 0029185933 scopus 로고
    • CRYSOL - A program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates
    • DOI 10.1107/S0021889895007047
    • Svergun D., Barberato C., and Koch M.H.J. CRYSOL - a program to evaluate X-ray solution scattering of biological macromolecules from atomic coordinates J. App. Cryst. 28 1995 768 773 (Pubitemid 3014671)
    • (1995) Journal of Applied Crystallography , vol.28 , Issue.6 , pp. 768-773
    • Svergun, D.1    Barberato, C.2    Koch, M.H.3
  • 24
    • 0035124442 scopus 로고    scopus 로고
    • Automated matching of high- and low-resolution structural models
    • DOI 10.1107/S0021889800014126
    • Kozin M.B., and Svergun D.I. Automated matching of high- and low-resolution structural models J. Appl. Crystallogr. 34 2001 33 41 (Pubitemid 32151714)
    • (2001) Journal of Applied Crystallography , vol.34 , Issue.1 , pp. 33-41
    • Kozin, M.B.1    Svergun, D.I.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.