Structure and dynamics of nitrifier populations in a full-scale submerged membrane bioreactor during start-up

Applied Microbiology and Biotechnology

Volumn 90, Issue 1, 2011, Pages 369-376

  Yu, Tao ^a   Li, Dong ^a   Qi, Rong ^a   Li, Sheng Tao ^b   Xu, Shi Wei ^b   Yang, Min ^a  

^a RESEARCH CENTER FOR ECO ENVIRONMENTAL SCIENCES   (China)

^b Beijing Drainage Group Co Ltd   (China)

Author keywords

Ammonia oxidizing archaea; Ammonia oxidizing bacteria; Membrane bioreactor; Nitrification; Sludge characteristics

Indexed keywords

ACTIVATED SLUDGE; AMMONIA OXIDATION; AMMONIA-OXIDIZING BACTERIA; ARCHAEA; CLONE LIBRARY; DENATURING GRADIENT GEL ELECTROPHORESIS; FLUORESCENCE IN SITU HYBRIDIZATION; FORMING RATE; MEMBRANE BIOREACTOR; MEMBRANE BIOREACTOR SYSTEM; MICROBIAL CHARACTERISTICS; MIXED LIQUOR SUSPENDED SOLIDS; NITRITE-OXIDIZING BACTERIA; NITROBACTER; NITROSOMONAS; POPULATION STRUCTURES; SLUDGE CHARACTERISTICS; START-UPS; STRUCTURE AND DYNAMICS; SUBMERGED MEMBRANE BIOREACTORS;

AMMONIA; AMMONIUM COMPOUNDS; BACTERIA; BACTERIOLOGY; BIOCONVERSION; CLONING; DENITRIFICATION; ELECTROPHORESIS; FLUORESCENCE MICROSCOPY; GENES; MEMBRANES; NITRIFICATION; OXIDATION; POLYMERASE CHAIN REACTION; SEWAGE;

BIOREACTORS;

ACTIVATED SLUDGE; BACTERIUM; BIOREACTOR; CLONE; ELECTROKINESIS; MEMBRANE; NITRIFICATION; OLIGOTROPHIC ENVIRONMENT; OXIDATION; POLYMERASE CHAIN REACTION;

AMMONIA OXIDIZING BACTERIA; AMOA GENE; ARTICLE; BACTERIAL GENE; BACTERIUM; MEMBRANE REACTOR; MICROBIAL POPULATION DYNAMICS; NITRITE OXIDIZING BACTERIA; NITROSOMONAS; NITROSOMONAS OLIGOTROPHA; NITROSOMONAS UREAE; NONHUMAN; NUCLEOTIDE SEQUENCE;

AMMONIA; BACTERIA; BIOREACTORS; MOLECULAR SEQUENCE DATA; NITRATES; NITRIFICATION; NITRITES; NITROSOMONAS; OXIDATION-REDUCTION; PHYLOGENY; SEWAGE;

BACTERIA (MICROORGANISMS); NITROBACTER; NITROSOMONADALES; NITROSOMONAS; NITROSOMONAS OLIGOTROPHA; NITROSOMONAS UREAE; UNCULTURED NITROSOMONAS SP.;

EID: 79954807089     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-010-3030-4     Document Type: Article

References (41)

1. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402 10.1093/nar/25.17.3389 1:CAS:528:DyaK2sXlvFyhu7w%3D (Pubitemid 27359211)
2. RI Amann W Ludwin KH Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59 143 169 1:CAS:528:DyaK2MXkvVGmurk%3D
3. JM Beman AC Francis 2006 Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahía del Tóbari Mexico Appl Environ Microbiol 72 12 7767 7777 10.1128/AEM.00946-06 1:CAS:528:DC%2BD28XhtlWqtrbI (Pubitemid 44927683)
4. A Cébron M Coci J Garnier HJ Laanbroek 2004 Denaturing gradient gel electrophoretic analysis of ammonia-oxidizing bacterial community structure in the lower Seine River: impact of Paris wastewater effluents Appl Environ Microbiol 70 11 6726 6737 10.1128/AEM.70.11.6726-6737.2004 (Pubitemid 39518584)
5. RD Chen TM Lapara 2008 Enrichment of dense nitrifying bacterial communities in membrane-coupled bioreactors Process Biochem 43 33 41 10.1016/j.procbio.2007.10.005 1:CAS:528:DC%2BD2sXhsVOltL3F (Pubitemid 350257021)
6. H Daims NB Ramsing K-H Schleifer M Wagner 2001 Cultivation-independent, semiautomatic determination of absolute bacterial cell numbers in environmental samples by fluorescence in situ hybridization Appl Environ Microbiol 67 5810 5818 10.1128/AEM.67.12.5810-5818.2001 1:CAS:528:DC%2BD3MXovFehtbw%3D (Pubitemid 33641020)
7. CA Francis KJ Roberts JM Beman AE Santoro BB Oakley 2005 Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean Proc Natl Acad Sci U S A 102 14683 14688 10.1073/pnas.0506625102 1:CAS:528:DC%2BD2MXhtFKjsb7J (Pubitemid 41457116)
8. DS Hagopial JG Riley 1998 A closer look at the bacteriology of nitrification Aquacultural Eng 18 223 244 10.1016/S0144-8609(98)00032-6 (Pubitemid 28508292)
9. H Hasar C KInacI A Ünlü 2004 Production of non-biodegradable compounds based on biomass activity in a submerged ultrafiltration hollow fibre membrane bioreactor treating raw whey Process Biochem 39 1631 1638 10.1016/S0032-9592(03)00299-1 1:CAS:528:DC%2BD2cXlsVejtLo%3D (Pubitemid 38871497)
10. R Hatzenpichler EV Lebedeva E Spieck K Stoecker A Richter H Daims M Wagner 2008 A moderately thermophilic ammonia-oxidizing crenarchaeote from a hot spring Proc Natl Acad Sci U S A 105 2134 2139 10.1073/pnas.0708857105 1:CAS:528:DC%2BD1cXitl2ls7o%3D (Pubitemid 351439477)
11. M Hesselose KK Brandt J Sorensen 2001 Nitrification of ammonia oxidizing bacteria in soil using microcolony technique combined with fluorescence in situ hybridization (MCFU-FISH) FEMS Microbiol Ecol 38 87 95 (Pubitemid 34084862)
12. L Hongyan Y Min Z Yu Y Tao K Yoichi 2005 Nitrification performance and microbial community dynamics in a submerged membrane bioreactor with complete sludge retention J Biotechnol 123 1 60 70
13. M Jin XW Wang TS Gong CQ Gu B Zhang ZQ Shen JW Li 2005 A novel membrane bioreactor enhanced by effective microorganisms for the treatment of domestic wastewater Appl Microbiol Biotechnol 69 229 235 10.1007/s00253-005-0108-5 1:CAS:528:DC%2BD2MXhtlWktrfE (Pubitemid 41795098)
14. GA Kowalchuk ZS Naoumenko PJL Derikx A Felske JR Stephen IA Arkhipchenko 1999 Molecular analysis of ammonia-oxidizing bacteria of the β subdivision of the class Proteobacteria in compost and composted materials Appl Environ Microbiol 65 396 403 1:CAS:528:DyaK1MXpvFCnuw%3D%3D (Pubitemid 29075074)
15. S Kumar K Tamura M Nei 2004 MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform 5 150 163 10.1093/bib/5.2.150 1:CAS:528:DC%2BD2cXntFGqu7s%3D
16. P Larsen JL Nielsen TC Svendsen PH Nielsen 2008 Adhesion characteristics of nitrifying bacteria in activated sludge Water Res 42 2814 2826 10.1016/j.watres.2008.02.015 1:CAS:528:DC%2BD1cXls1Krsrk%3D
17. D Liang MA Ivan H Chun-lin X Siqing WH Slawomir 2009 Effects of short solids retention time on microbial community in a membrane bioreactor Bioresour Technol 100 3489 3496 10.1016/j.biortech.2008.06.012
18. T Limpiyakorn Y Shinohara F Kurisu O Yagi 2005 Communities of ammonia-oxidizing bacteria in activated sludge of various sewage treatment plants in Tokyo FEMS Microbiol Ecol 54 2 205 217 10.1016/j.femsec.2005.03.017 1:CAS:528:DC%2BD2MXhtVarsbzK (Pubitemid 41317921)
19. S Lyko T Wintgens D Al-Halbouni S Baumgarten D Tacke K Drensla A Janot W Dott J Pinnekamp T Melin 2008 Long-term monitoring of a full-scale municipal membrane bioreactor-characterisation of foulants and operational performance J Membr Sci 317 78 87 10.1016/j.memsci.2007.07.008 1:CAS:528:DC%2BD1cXmtVantrc%3D (Pubitemid 351636436)
20. Y Miura MN Hiraiwa T Ito T Itonaga Y Watanabe S Okabe 2007 Bacterial community structures in MBRs treating municipal wastewater: relationship between community stability and reactor performance Water Res 3 41 627 637 10.1016/j.watres.2006.11.005 (Pubitemid 46072666)
21. BK Mobarry M Wagner V Urbain BE Rittmann DA Stahl 1996 Phylogenetic probes for analyzing abundance and spatial organization of nitrifying bacteria Appl Environ Microbiol 62 6 2156 2162 1:CAS:528:DyaK28XjtlGgsbs%3D (Pubitemid 26169016)
22. G Muyzer ECD Waal AG Uitterlinden 1993 Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction amplified genes coding for 16S rRNA Appl Environ Microbiol 59 695 700 1:CAS:528:DyaK3sXit1Kktrk%3D (Pubitemid 23072343)
23. HD Park GF Wells H Bae CS Criddle CA Francis 2006 Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors Appl Environ Microbiol 72 8 5643 5647 10.1128/AEM.00402-06 1:CAS:528:DC%2BD28XosVKlt7s%3D
24. F Persson T Wik F Sorensson M Hermansson 2002 Distribution and activity of ammonia oxidizing bacteria in a large full-scale trickling filter Water Res 36 1439 1448 10.1016/S0043-1354(01)00345-1 1:CAS:528:DC%2BD38Xhslygu7s%3D (Pubitemid 34230339)
25. A Pollice G Laera D Saturno C Giordano 2008 Effects of sludge retention time on the performance of a membrane bioreactor treating municipal sewage J Membr Sci 317 65 70 10.1016/j.memsci.2007.08.051 1:CAS:528:DC%2BD1cXmtVantrk%3D (Pubitemid 351636439)
26. U Purkhold A Pommerening-Roser S Juretschko MC Schmid H-P Koops M Wanger 2000 Phylogeny of all recognized species of ammonia oxidizers based on comparative 16S rRNA and amoA sequence analysis: implications for molecular diversity surveys Appl Environ Microbiol 66 5368 5382 10.1128/AEM.66.12.5368- 5382.2000 1:CAS:528:DC%2BD3MXjsVygsro%3D (Pubitemid 32217144)
27. T Reinthaler C Winter GJ Herndl 2005 Relationship between bacterioplankton richness, respiration, production in the southern North Sea Appl Environ Microbiol 71 5 2260 2266 10.1128/AEM.71.5.2260-2266.2005 1:CAS:528:DC%2BD2MXktFKmt78%3D (Pubitemid 40646965)
28. S Rosenberger U Krüger R Witzig W Manz U Szewzyk M Kraume 2002 Performance of a bioreactor with submerged membranes for aerobic treatment of municipal wastewater Water Res 36 413 420 10.1016/S0043-1354(01)00223-8 1:CAS:528:DC%2BD3MXosF2gtLo%3D (Pubitemid 33124253)
29. JH Rotthauwe KP Witzel W Liesack 1997 The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations Appl Environ Microbiol 63 12 4704 4712 1:CAS:528:DyaK2sXnvV2rtr0%3D (Pubitemid 27524201)
30. AK Rowan JR Snape D Fearnside MR Barer TP Curtis IM Head 2003 Composition and diversity of ammonia-oxidising bacterial communities in wastewater treatment reactors of different design treating identical wastewater FEMS Microbiol Ecol 43 2 195 206 10.1111/j.1574-6941.2003.tb01059.x 1:CAS:528:DC%2BD3sXht1Kmtro%3D (Pubitemid 36204033)
31. PE Saikaly PG Stroot DB Oerther 2005 Use of 16S rRNA gene terminal restriction fragment analysis to assess the impact of solids retention time on the bacterial diversity of activated sludge Appl Environ Microbiol 71 10 5814 5822 10.1128/AEM.71.10.5814-5822.2005 1:CAS:528:DC%2BD2MXhtFajtb3E (Pubitemid 41456872)
32. S Slil ER Bruce 2007 Diversity study of nitrifying bacteria in full-scale municipal wastewater treatment plants Water Res 41 1110 1120 10.1016/j.watres.2006.11.050 (Pubitemid 46215716)
33. DM Stamper M Walch RN Jacobs 2003 Bacterial population changes in a membrane bioreactor for graywater treatment monitored by denaturing gradient gel electrophoretic analysis of 16S rRNA gene fragments Appl Environ Microbiol 69 2 852 860 10.1128/AEM.69.2.852-860.2003 1:CAS:528:DC%2BD3sXhtF2is7Y%3D (Pubitemid 36204811)
34. JD Thompson TJ Gibson F Plewniak F Jeanmougin DG Higgins 1997 The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res 25 4876 4882 10.1093/nar/25.24.4876 1:CAS:528:DyaK1cXntFyntQ%3D%3D (Pubitemid 28022245)
35. LM Whang IC Chien SL Yuan YJ Wu 2009 Nitrifying community structures and nitrification performance of full-scale municipal and swine wastewater treatment plants Chemosphere 75 234 242 10.1016/j.chemosphere.2008.11.059 1:CAS:528:DC%2BD1MXjt1Kmsbc%3D
36. R Witzig W Manz S Rosenberger U Krüger M Kraume U Szewzyk 2002 Microbiological aspects of a bioreactor with submerged membranes for aerobic treatment of municipal wastewater Water Res 36 2 394 402 10.1016/S0043-1354(01) 00221-4 1:CAS:528:DC%2BD3MXosF2gtLw%3D (Pubitemid 33124251)
37. Y Xue F Yang S Liu Z Fu 2009 The influence of controlling factors on the start-up and operation for partial nitrification in membrane bioreactor Bioresour Technol 100 1055 1060 10.1016/j.biortech.2008.07.052 1:CAS:528:DC%2BD1cXhtlOhtL%2FO
38. SJ You WY Chen 2008 Ammonia oxidizing bacteria in a nitrite-accumulating membrane bioreactor Int Biodeterior Biodegradation 62 244 249 10.1016/j.ibiod.2008.01.013 1:CAS:528:DC%2BD1cXhtVyltrnM
39. SJ You CL Hsu SH Chuang CF Ouyang 2003 Nitrification efficiency and nitrifying bacteria abundance in combined AS-RBC and A2O systems Water Res 37 2281 2290 10.1016/S0043-1354(02)00636-X 1:CAS:528:DC%2BD3sXjt1entr4%3D (Pubitemid 36506702)
40. J You A Das EM Dolan Z Hu 2009 Ammonia-oxidizing archaea involved in nitrogen removal Water Res 43 1801 1809 10.1016/j.watres.2009.01.016 1:CAS:528:DC%2BD1MXktVCmtLs%3D
41. T Yu R Qi D Li Y Zhang M Yang 2010 Nitrifier characteristics in submerged membrane bioreactors under different sludge retention times Water Res 44 9 2823 2830 10.1016/j.watres.2010.02.021 1:CAS:528:DC%2BC3cXltFGru7k%3D