-
1
-
-
0034775280
-
Ammonia-oxidizing bacteria: a model for molecular microbial ecology
-
Kowalchuk G.A., and Stephen J.R. Ammonia-oxidizing bacteria: a model for molecular microbial ecology. Annu Rev Microbiol 55 (2001) 485-529
-
(2001)
Annu Rev Microbiol
, vol.55
, pp. 485-529
-
-
Kowalchuk, G.A.1
Stephen, J.R.2
-
2
-
-
0036323050
-
Worldwide distribution of Nitrosococcus oceani, a marine ammonia-oxidizing γ-proteobacterium, detected by PCR and sequencing of 16S rRNA and amoA genes
-
Ward B.B., and O'Mullan G.D. Worldwide distribution of Nitrosococcus oceani, a marine ammonia-oxidizing γ-proteobacterium, detected by PCR and sequencing of 16S rRNA and amoA genes. Appl Environ Microbiol 68 (2002) 4153-4157
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 4153-4157
-
-
Ward, B.B.1
O'Mullan, G.D.2
-
3
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
Konneke M., Bernhard A.E., de la Torre J.R., Walker C.B., Waterbury J.B., and Stahl D.A. Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437 (2005) 543-546
-
(2005)
Nature
, vol.437
, pp. 543-546
-
-
Konneke, M.1
Bernhard, A.E.2
de la Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
4
-
-
28844476673
-
Nitrobacter and nitrospira genera as representatives of nitrite-oxidizing bacteria: detection, quantification and growth along the low Seine River (France)
-
Cebron A., and Garnier J. Nitrobacter and nitrospira genera as representatives of nitrite-oxidizing bacteria: detection, quantification and growth along the low Seine River (France). Water Res 39 (2005) 4979-4992
-
(2005)
Water Res
, vol.39
, pp. 4979-4992
-
-
Cebron, A.1
Garnier, J.2
-
5
-
-
0036136954
-
Quantification of Nitrosomonas oligotropha-like ammonia-oxidizing bacteria and Nitrospira spp. from full-scale wastewater treatment plants by competitive PCR
-
Dionisi H.M., Layton A.C., Harms G., Gregory I.R., Robinson K.G., and Sayler G.S. Quantification of Nitrosomonas oligotropha-like ammonia-oxidizing bacteria and Nitrospira spp. from full-scale wastewater treatment plants by competitive PCR. Appl Environ Microbiol 68 (2002) 245-253
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 245-253
-
-
Dionisi, H.M.1
Layton, A.C.2
Harms, G.3
Gregory, I.R.4
Robinson, K.G.5
Sayler, G.S.6
-
6
-
-
29144436638
-
Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp.
-
Martiny A.C., Albrechtsen H.J., Arvin E., and Molin S. Identification of bacteria in biofilm and bulk water samples from a nonchlorinated model drinking water distribution system: detection of a large nitrite-oxidizing population associated with Nitrospira spp. Appl Environ Microbiol 71 (2005) 8611-8617
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 8611-8617
-
-
Martiny, A.C.1
Albrechtsen, H.J.2
Arvin, E.3
Molin, S.4
-
7
-
-
0029810964
-
Biodegradation of organic wastes containing surfactants in a biomass recycle reactor
-
Konopka A., Zakharova T., Oliver L., Camp D., and Turco R.F. Biodegradation of organic wastes containing surfactants in a biomass recycle reactor. Appl Environ Microbiol 62 (1996) 3292-3297
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 3292-3297
-
-
Konopka, A.1
Zakharova, T.2
Oliver, L.3
Camp, D.4
Turco, R.F.5
-
8
-
-
0031807562
-
Physiological state of a microbial community in a biomass recycle reactor
-
Konopka A., Zakharova T., Oliver L., Paseuth E., and Turco R.F. Physiological state of a microbial community in a biomass recycle reactor. J Ind Microbiol Biotechnol 20 (1998) 232-237
-
(1998)
J Ind Microbiol Biotechnol
, vol.20
, pp. 232-237
-
-
Konopka, A.1
Zakharova, T.2
Oliver, L.3
Paseuth, E.4
Turco, R.F.5
-
9
-
-
0036835950
-
Functional and structural adaptations of bacterial communities growing on particulate substrates under stringent nutrient limitation
-
LaPara T.M., Zakharova T., Nakatsu C.H., and Konopka A. Functional and structural adaptations of bacterial communities growing on particulate substrates under stringent nutrient limitation. Microb Ecol 44 (2002) 317-326
-
(2002)
Microb Ecol
, vol.44
, pp. 317-326
-
-
LaPara, T.M.1
Zakharova, T.2
Nakatsu, C.H.3
Konopka, A.4
-
10
-
-
32244441053
-
Aerobic biological treatment of low-strength synthetic wastewater in membrane-coupled bioreactors: the structure and function of bacterial enrichment cultures as the net growth rate approaches zero
-
Chen R., and LaPara T.M. Aerobic biological treatment of low-strength synthetic wastewater in membrane-coupled bioreactors: the structure and function of bacterial enrichment cultures as the net growth rate approaches zero. Microb Ecol 51 (2006) 99-108
-
(2006)
Microb Ecol
, vol.51
, pp. 99-108
-
-
Chen, R.1
LaPara, T.M.2
-
11
-
-
0035527414
-
Environmental diversity of bacteria and archaea
-
DeLong E.E., and Pace N.R. Environmental diversity of bacteria and archaea. Syst Biol 50 (2001) 470-478
-
(2001)
Syst Biol
, vol.50
, pp. 470-478
-
-
DeLong, E.E.1
Pace, N.R.2
-
12
-
-
0037420734
-
Aerobic biological treatment of synthetic municipal wastewater in membrane-coupled bioreactors
-
Klatt C.G., and LaPara T.M. Aerobic biological treatment of synthetic municipal wastewater in membrane-coupled bioreactors. Biotechnol Bioeng 82 (2003) 313-320
-
(2003)
Biotechnol Bioeng
, vol.82
, pp. 313-320
-
-
Klatt, C.G.1
LaPara, T.M.2
-
13
-
-
0000058583
-
Isolation of members of the family Rhodospirillacaea
-
Starr M.P., Stolp H.G., Troper H.G., Balows A., and Schlegel H.G. (Eds), Springer-Verlag, Berlin
-
Biebl H., and Pfennig N. Isolation of members of the family Rhodospirillacaea. In: Starr M.P., Stolp H.G., Troper H.G., Balows A., and Schlegel H.G. (Eds). The prokaryotes (1981), Springer-Verlag, Berlin 267-273
-
(1981)
The prokaryotes
, pp. 267-273
-
-
Biebl, H.1
Pfennig, N.2
-
15
-
-
0001872693
-
Chemical analysis
-
Gerhardt P., Murray R.G.E., Wood W.A., and Krieg N.R. (Eds), American Society for Microbiology, Washington, DC
-
Daniels L., Hanson R.S., and Phillips J.A. Chemical analysis. In: Gerhardt P., Murray R.G.E., Wood W.A., and Krieg N.R. (Eds). Methods for general and molecular bacteriology (1994), American Society for Microbiology, Washington, DC 512-554
-
(1994)
Methods for general and molecular bacteriology
, pp. 512-554
-
-
Daniels, L.1
Hanson, R.S.2
Phillips, J.A.3
-
16
-
-
0001857117
-
16S/23S rRNA sequencing
-
Stackebrandt E., and Goodfellow M. (Eds), John Wiley & Sons, New York
-
Lane D.J. 16S/23S rRNA sequencing. In: Stackebrandt E., and Goodfellow M. (Eds). Nucleic acid techniques in bacterial systematics (1991), John Wiley & Sons, New York 115-175
-
(1991)
Nucleic acid techniques in bacterial systematics
, pp. 115-175
-
-
Lane, D.J.1
-
17
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis-analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G., Dewaal E.C., and Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis-analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59 (1993) 695-700
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
Dewaal, E.C.2
Uitterlinden, A.G.3
-
18
-
-
0004136246
-
-
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
Sambrook J., Fritsch E.F., and Maniatis T. Molecular cloning: a laboratory manual. 2nd ed. (1989), Cold Spring Harbor Laboratory, Cold Spring Harbor, NY
-
(1989)
Molecular cloning: a laboratory manual. 2nd ed.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
19
-
-
0036081345
-
GenBank
-
Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Rapp B.A., and Wheeler D.L. GenBank. Nucleic Acids Res 30 (2002) 17-20
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 17-20
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Rapp, B.A.5
Wheeler, D.L.6
-
20
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul S.F., Madden T.L., Schäffer A.A., Zhang J., Zhang Z., Miller W., and Lipman D.J. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25 (1997) 3389-3402
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
23
-
-
0036131832
-
Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE
-
LaPara T.M., Nakatsu C.H., Pantea L.M., and Alleman J.E. Stability of the bacterial communities supported by a seven-stage biological process treating pharmaceutical wastewater as revealed by PCR-DGGE. Water Res 36 (2002) 638-646
-
(2002)
Water Res
, vol.36
, pp. 638-646
-
-
LaPara, T.M.1
Nakatsu, C.H.2
Pantea, L.M.3
Alleman, J.E.4
-
24
-
-
27444443967
-
Failure of the ammonia oxidation process in two pharmaceutical wastewater treatment plants is linked to shifts in the bacterial communities
-
Wittebolle L., Boon N., Vanparys B., Heylen K., De Vos P., and Verstraete W. Failure of the ammonia oxidation process in two pharmaceutical wastewater treatment plants is linked to shifts in the bacterial communities. J Appl Microbiol 99 (2005) 997-1006
-
(2005)
J Appl Microbiol
, vol.99
, pp. 997-1006
-
-
Wittebolle, L.1
Boon, N.2
Vanparys, B.3
Heylen, K.4
De Vos, P.5
Verstraete, W.6
-
25
-
-
33645942438
-
Population dynamics of the ammonia-oxidizing bacteria in a full-scale municipal wastewater treatment facility
-
LaPara T.M., and Ghosh S. Population dynamics of the ammonia-oxidizing bacteria in a full-scale municipal wastewater treatment facility. Environ Eng Sci 23 (2006) 309-319
-
(2006)
Environ Eng Sci
, vol.23
, pp. 309-319
-
-
LaPara, T.M.1
Ghosh, S.2
-
26
-
-
0034868585
-
Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species
-
Koops H., and Pommerening-Röser A. Distribution and ecophysiology of the nitrifying bacteria emphasizing cultured species. FEMS Microbiol Ecol 37 (2001) 1-9
-
(2001)
FEMS Microbiol Ecol
, vol.37
, pp. 1-9
-
-
Koops, H.1
Pommerening-Röser, A.2
-
27
-
-
0028245631
-
Efficiency of lactic acid production by Lactobacillus helveticus in a membrane cell recycle reactor
-
Timmer J.M., and Kromkamp J. Efficiency of lactic acid production by Lactobacillus helveticus in a membrane cell recycle reactor. FEMS Microbiol Rev 14 (1994) 29-38
-
(1994)
FEMS Microbiol Rev
, vol.14
, pp. 29-38
-
-
Timmer, J.M.1
Kromkamp, J.2
-
28
-
-
0021779934
-
Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats
-
Staley J.T., and Konopka A. Measurement of in situ activities of nonphotosynthetic microorganisms in aquatic and terrestrial habitats. Annu Rev Microbiol 39 (1985) 321-346
-
(1985)
Annu Rev Microbiol
, vol.39
, pp. 321-346
-
-
Staley, J.T.1
Konopka, A.2
-
29
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann R.I., Ludwig W., and Schleifer K.-H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59 (1995) 143-169
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.I.1
Ludwig, W.2
Schleifer, K.-H.3
-
30
-
-
0035211790
-
Species diversity of uncultured and cultured populations of soil and marine ammonia oxidizing bacteria
-
Smith Z., McCaig A.E., and Stephen J.R. Species diversity of uncultured and cultured populations of soil and marine ammonia oxidizing bacteria. Microb Ecol 42 (2001) 228-237
-
(2001)
Microb Ecol
, vol.42
, pp. 228-237
-
-
Smith, Z.1
McCaig, A.E.2
Stephen, J.R.3
-
31
-
-
1642418320
-
Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridization
-
Kindaichi T., Ito T., and Okabe S. Ecophysiological interaction between nitrifying bacteria and heterotrophic bacteria in autotrophic nitrifying biofilms as determined by microautoradiography-fluorescence in situ hybridization. Appl Environ Microbiol 70 (2004) 1641-1650
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1641-1650
-
-
Kindaichi, T.1
Ito, T.2
Okabe, S.3
-
32
-
-
33646495327
-
Why is metabolic labour divided in nitrification?
-
Costa E., Perez J., and Kreft J.U. Why is metabolic labour divided in nitrification?. Trends Microbiol 14 (2006) 213-219
-
(2006)
Trends Microbiol
, vol.14
, pp. 213-219
-
-
Costa, E.1
Perez, J.2
Kreft, J.U.3
-
33
-
-
0345195995
-
Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis
-
von Witzengerode F., Göbel U.B., and Stackebrandt E. Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21 (1997) 213-229
-
(1997)
FEMS Microbiol Rev
, vol.21
, pp. 213-229
-
-
von Witzengerode, F.1
Göbel, U.B.2
Stackebrandt, E.3
-
34
-
-
0031842162
-
Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region
-
Hansen M.C., Tolkernielsen T., Givskov M., and Molin S. Biased 16S rDNA PCR amplification caused by interference from DNA flanking the template region. FEMS Microbiol Ecol 26 (1998) 141-149
-
(1998)
FEMS Microbiol Ecol
, vol.26
, pp. 141-149
-
-
Hansen, M.C.1
Tolkernielsen, T.2
Givskov, M.3
Molin, S.4
-
35
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki M.T., and Giovannoni S.J. Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62 (1996) 625-630
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
36
-
-
0030698675
-
Evaluation of denaturing gradient gel electrophoresis in the detection of 16S rDNA sequence variation in rhizobia and methanotrophs
-
Vallaeys T., Topp E., Muyzer G., Macheret V., Laguerre G., and Soulas G. Evaluation of denaturing gradient gel electrophoresis in the detection of 16S rDNA sequence variation in rhizobia and methanotrophs. FEMS Microbiol Ecol 24 (1997) 279-285
-
(1997)
FEMS Microbiol Ecol
, vol.24
, pp. 279-285
-
-
Vallaeys, T.1
Topp, E.2
Muyzer, G.3
Macheret, V.4
Laguerre, G.5
Soulas, G.6
-
37
-
-
0343416244
-
Competitive PCR-DGGE analysis of bacterial mixtures an internal standard and an appraisal of template enumeration accuracy
-
Brüggemann J., Stephen J.R., Chang Y.-J., MacNaughton S.J., Kowalchuk G.A., Kline E., and White D.C. Competitive PCR-DGGE analysis of bacterial mixtures an internal standard and an appraisal of template enumeration accuracy. J Microbiol Methods 40 (2000) 111-123
-
(2000)
J Microbiol Methods
, vol.40
, pp. 111-123
-
-
Brüggemann, J.1
Stephen, J.R.2
Chang, Y.-J.3
MacNaughton, S.J.4
Kowalchuk, G.A.5
Kline, E.6
White, D.C.7
-
39
-
-
0029669586
-
Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria
-
Hovanec T.A., and DeLong E.F. Comparative analysis of nitrifying bacteria associated with freshwater and marine aquaria. Appl Environ Microbiol 62 (1996) 2888-2896
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 2888-2896
-
-
Hovanec, T.A.1
DeLong, E.F.2
|