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Volumn 8, Issue 5, 2011, Pages 1344-1357

SLIDER: A generic metaheuristic for the discovery of correlated motifs in protein-protein interaction networks

Author keywords

biology and genetics; Graphs and networks

Indexed keywords

ALGORITHMIC SOLUTIONS; BIOLOGY AND GENETICS; COMBINATORIAL OPTIMIZATION PROBLEMS; GRAPHS AND NETWORKS; LARGE CLASS; METAHEURISTIC; NEIGHBORHOOD FUNCTION; NP-HARD PROBLEM; PROTEIN INTERACTION; PROTEIN-PROTEIN INTERACTION NETWORKS; STEEPEST ASCENT; SUPPORT MEASURE;

EID: 79953904499     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2011.17     Document Type: Article
Times cited : (9)

References (20)
  • 2
    • 5044235050 scopus 로고    scopus 로고
    • Ten thousand interactions for the molecular biologist
    • DOI 10.1038/nbt1018
    • P. Aloy and R. Russell, "Ten Thousand Interactions for the Molecular Biologist," Nature Biotechnology, vol. 22, pp. 1317-1321, 2004. (Pubitemid 39336787)
    • (2004) Nature Biotechnology , vol.22 , Issue.10 , pp. 1317-1321
    • Aloy, P.1    Russell, R.B.2
  • 4
    • 0344236266 scopus 로고    scopus 로고
    • Metaheuristics in combinatorial optimization: Overview and conceptual comparison
    • C. Blum and A. Roli, "Metaheuristics in Combinatorial Optimization: Overview and Conceptual Comparison," ACM Computing Surveys, vol. 35, no. 3, pp. 268-308, 2003.
    • (2003) ACM Computing Surveys , vol.35 , Issue.3 , pp. 268-308
    • Blum, C.1    Roli, A.2
  • 9
    • 0004014257 scopus 로고
    • Computer Program, Dept. of Biochemistry and Molecular Biology, Univ. College London
    • S. Hubbard and J. Thornton, "NACCESS" Computer Program, Dept. of Biochemistry and Molecular Biology, Univ. College London, 1993.
    • (1993) NACCESS
    • Hubbard, S.1    Thornton, J.2
  • 12
    • 33645857372 scopus 로고    scopus 로고
    • Discovering motif pairs at interaction sites from protein sequences on a proteome-wide scale
    • H. Li, J. Li, and L. Wong, "Discovering Motif Pairs at Interaction Sites from Protein Sequences on a Proteome-Wide Scale," Bioinformatics, vol. 22, no. 8, pp. 989-996, 2006.
    • (2006) Bioinformatics , vol.22 , Issue.8 , pp. 989-996
    • Li, H.1    Li, J.2    Wong, L.3
  • 13
    • 35649007860 scopus 로고    scopus 로고
    • Maximal biclique subgraphs and closed pattern pairs of the adjacency matrix: A one-to-one correspondence and mining algorithms
    • Dec.
    • J. Li, G. Liu, H. Li, and L. Wong, "Maximal Biclique Subgraphs and Closed Pattern Pairs of the Adjacency Matrix: A One-to-One Correspondence and Mining Algorithms," IEEE Trans. Knowledge and Data Eng., vol. 19, no. 12, pp. 1625-1637, Dec. 2007.
    • (2007) IEEE Trans. Knowledge and Data Eng. , vol.19 , Issue.12 , pp. 1625-1637
    • Li, J.1    Liu, G.2    Li, H.3    Wong, L.4
  • 14
    • 52649178351 scopus 로고    scopus 로고
    • Maximal quasi-bicliques with balanced noise tolerance: Concepts and co-clustering applications
    • J. Li, K. Sim, G. Liu, and L. Wong, "Maximal Quasi-Bicliques with Balanced Noise Tolerance: Concepts and Co-Clustering Applications," Proc. SIAM Int'l Conf. Data Mining (SDM '08), pp. 72-83, 2008.
    • (2008) Proc. SIAM Int'l Conf. Data Mining (SDM '08) , pp. 72-83
    • Li, J.1    Sim, K.2    Liu, G.3    Wong, L.4
  • 15
    • 58149193222 scopus 로고    scopus 로고
    • Human protein reference database-2009 update
    • T. Prasad et al., "Human Protein Reference Database-2009 Update," Nucleic Acids Research, vol. 37, pp. D767-D772, 2009.
    • (2009) Nucleic Acids Research , vol.37
    • Prasad, T.1
  • 17
    • 33845276720 scopus 로고    scopus 로고
    • A correlated motif approach for finding short linear motifs from protein interaction networks
    • article no. 502, Nov.
    • S. Tan, W. Hugo, W. Sung, and S. Ng, "A Correlated Motif Approach for Finding Short Linear Motifs from Protein Interaction Networks," BMC Bioinformatics, vol. 7, article no. 502, Nov. 2006.
    • (2006) BMC Bioinformatics , vol.7
    • Tan, S.1    Hugo, W.2    Sung, W.3    Ng, S.4
  • 18
    • 37549025792 scopus 로고    scopus 로고
    • Predicting and understanding transcription factor interactions based on sequence level determinants of combinatorial control
    • A. van Dijk, C. ter Braak, R. Immink, G. Angenent, and R. van Ham, "Predicting and Understanding Transcription Factor Interactions Based on Sequence Level Determinants of Combinatorial Control," Bioinformatics, vol. 24, no. 1, pp. 26-33, 2008.
    • (2008) Bioinformatics , vol.24 , Issue.1 , pp. 26-33
    • Van Dijk, A.1    Ter Braak, C.2    Immink, R.3    Angenent, G.4    Van Ham, R.5
  • 19
    • 0037161731 scopus 로고    scopus 로고
    • Comparative assessment of large-scale data sets of protein-protein interactions
    • C. von Mering, R. Krause, B. Snel, M. Cornell, S. Oliver, S. Fields, and P. Bork, "Comparative Assessment of Large-Scale Data Sets of Protein-Protein Interactions," Nature, vol. 417, pp. 399-403, 2002. (Pubitemid 34563526)
    • (2002) Nature , vol.417 , Issue.6887 , pp. 399-403
    • Von Mering, C.1    Krause, R.2    Snel, B.3    Cornell, M.4    Oliver, S.G.5    Fields, S.6    Bork, P.7
  • 20
    • 59149087824 scopus 로고    scopus 로고
    • Prediction of protein- protein interaction sites in sequences and 3d structures by random forests
    • M. Šikić, S. Tomić, and K. Vlahoviček, "Prediction of Protein- Protein Interaction Sites in Sequences and 3d Structures by Random Forests," PLoS Computational Biology, vol. 5, no. 1, p. e1000278+, 2009.
    • (2009) PLoS Computational Biology , vol.5 , Issue.1
    • Šikić, M.1    Tomić, S.2    Vlahoviček, K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.