-
1
-
-
28044471565
-
MicroRNA functions in animal development and human disease
-
Alvarez-Garcia I., Miska E.A. MicroRNA functions in animal development and human disease. Development 2005, 132:4653-4662.
-
(2005)
Development
, vol.132
, pp. 4653-4662
-
-
Alvarez-Garcia, I.1
Miska, E.A.2
-
2
-
-
45849095711
-
Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing
-
Azuma-Mukai A., Oguri H., Mituyama T., Qian Z.R., Asai K., Siomi H., Siomi M.C. Characterization of endogenous human Argonautes and their miRNA partners in RNA silencing. Proceedings of the National Academy of Sciences of the United States of America 2008, 105:7964-7969.
-
(2008)
Proceedings of the National Academy of Sciences of the United States of America
, vol.105
, pp. 7964-7969
-
-
Azuma-Mukai, A.1
Oguri, H.2
Mituyama, T.3
Qian, Z.R.4
Asai, K.5
Siomi, H.6
Siomi, M.C.7
-
3
-
-
54349104464
-
Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs
-
Babiarz J.E., Ruby J.G., Wang Y., Bartel D.P., Blelloch R. Mouse ES cells express endogenous shRNAs, siRNAs, and other Microprocessor-independent, Dicer-dependent small RNAs. Genes & Development 2008, 22:2773-2785.
-
(2008)
Genes & Development
, vol.22
, pp. 2773-2785
-
-
Babiarz, J.E.1
Ruby, J.G.2
Wang, Y.3
Bartel, D.P.4
Blelloch, R.5
-
4
-
-
0347444723
-
MicroRNAs: genomics, biogenesis, mechanism, and function
-
Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 2004, 116:281-297.
-
(2004)
Cell
, vol.116
, pp. 281-297
-
-
Bartel, D.P.1
-
5
-
-
56949098027
-
Functional genetic variation of human miRNAs and phenotypic consequences
-
Borel C., Antonarakis S.E. Functional genetic variation of human miRNAs and phenotypic consequences. Mammalian Genome 2008, 19:503-509.
-
(2008)
Mammalian Genome
, vol.19
, pp. 503-509
-
-
Borel, C.1
Antonarakis, S.E.2
-
6
-
-
78649255480
-
A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness
-
Burroughs A.M., Ando Y., de Hoon M.J., Tomaru Y., Nishibu T., Ukekawa R., Funakoshi T., Kurokawa T., Suzuki H., Hayashizaki Y., Daub C.O. A comprehensive survey of 3′ animal miRNA modification events and a possible role for 3′ adenylation in modulating miRNA targeting effectiveness. Genome Research 2010, 20:1398-1410.
-
(2010)
Genome Research
, vol.20
, pp. 1398-1410
-
-
Burroughs, A.M.1
Ando, Y.2
de Hoon, M.J.3
Tomaru, Y.4
Nishibu, T.5
Ukekawa, R.6
Funakoshi, T.7
Kurokawa, T.8
Suzuki, H.9
Hayashizaki, Y.10
Daub, C.O.11
-
7
-
-
33644853907
-
The colorectal microRNAome
-
Cummins J.M., He Y.P., Leary R.J., Pagliarini R., Diaz L.A., Sjoblom T., Barad O., Bentwich Z., Szafranska A.E., Labourier E., Raymond C.K., Roberts B.S., Juhl H., Kinzler K.W., Vogelstein B., Velculescu V.E. The colorectal microRNAome. Proceedings of the National Academy of Sciences of the United States of America 2006, 103:3687-3692.
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, pp. 3687-3692
-
-
Cummins, J.M.1
He, Y.P.2
Leary, R.J.3
Pagliarini, R.4
Diaz, L.A.5
Sjoblom, T.6
Barad, O.7
Bentwich, Z.8
Szafranska, A.E.9
Labourier, E.10
Raymond, C.K.11
Roberts, B.S.12
Juhl, H.13
Kinzler, K.W.14
Vogelstein, B.15
Velculescu, V.E.16
-
8
-
-
75649089335
-
Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries
-
de Hoon M.J.L., Taft R.J., Hashimoto T., Kanamori-Katayama M., Kawaji H., Kawano M., Kishima M., Lassmann T., Faulkner G.J., Mattick J.S., Daub C.O., Carninci P., Kawai J., Suzuki H., Hayashizaki Y. Cross-mapping and the identification of editing sites in mature microRNAs in high-throughput sequencing libraries. Genome Research 2010, 20:257-264.
-
(2010)
Genome Research
, vol.20
, pp. 257-264
-
-
de Hoon, M.J.L.1
Taft, R.J.2
Hashimoto, T.3
Kanamori-Katayama, M.4
Kawaji, H.5
Kawano, M.6
Kishima, M.7
Lassmann, T.8
Faulkner, G.J.9
Mattick, J.S.10
Daub, C.O.11
Carninci, P.12
Kawai, J.13
Suzuki, H.14
Hayashizaki, Y.15
-
9
-
-
77955328547
-
The fate of miRNA* strand through evolutionary analysis: implication for degradation as merely carrier strand or potential regulatory molecule?
-
Guo L., Lu Z. The fate of miRNA* strand through evolutionary analysis: implication for degradation as merely carrier strand or potential regulatory molecule?. PLoS ONE 2010, 5:e11387.
-
(2010)
PLoS ONE
, vol.5
-
-
Guo, L.1
Lu, Z.2
-
10
-
-
77955422438
-
Global expression analysis of miRNA gene cluster and family based on isomiRs from deep sequencing data
-
Guo L., Lu Z. Global expression analysis of miRNA gene cluster and family based on isomiRs from deep sequencing data. Computational Biology and Chemistry 2010, 34:165-171.
-
(2010)
Computational Biology and Chemistry
, vol.34
, pp. 165-171
-
-
Guo, L.1
Lu, Z.2
-
11
-
-
77349092849
-
Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
-
Jagadeeswaran G., Zheng Y., Sumathipala N., Jiang H.B., Arrese E.L., Soulages J.L., Zhang W.X., Sunkar R. Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development. BMC Genomics 2010, 11:52.
-
(2010)
BMC Genomics
, vol.11
, pp. 52
-
-
Jagadeeswaran, G.1
Zheng, Y.2
Sumathipala, N.3
Jiang, H.B.4
Arrese, E.L.5
Soulages, J.L.6
Zhang, W.X.7
Sunkar, R.8
-
12
-
-
69949154245
-
Zcchc11-dependent uridylation of microRNA directs cytokine expression
-
Jones M.R., Quinton L.J., Blahna M.T., Neilson J.R., Fu S.N., Ivanov A.R., Wolf D.A., Mizgerd J.P. Zcchc11-dependent uridylation of microRNA directs cytokine expression. Nature Cell Biology 2009, 11:1157-1163.
-
(2009)
Nature Cell Biology
, vol.11
, pp. 1157-1163
-
-
Jones, M.R.1
Quinton, L.J.2
Blahna, M.T.3
Neilson, J.R.4
Fu, S.N.5
Ivanov, A.R.6
Wolf, D.A.7
Mizgerd, J.P.8
-
13
-
-
61449186404
-
Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly (A) polymerase GLD-2
-
Katoh T., Sakaguchi Y., Miyauchi K., Suzuki T., Kashiwabara S., Baba T., Suzuki T. Selective stabilization of mammalian microRNAs by 3′ adenylation mediated by the cytoplasmic poly (A) polymerase GLD-2. Genome Research 2009, 23:433-438.
-
(2009)
Genome Research
, vol.23
, pp. 433-438
-
-
Katoh, T.1
Sakaguchi, Y.2
Miyauchi, K.3
Suzuki, T.4
Kashiwabara, S.5
Baba, T.6
Suzuki, T.7
-
14
-
-
55549129277
-
In-depth characterization of the microRNA transcriptome in a leukemia progression model
-
Kuchenbauer F., Morin R.D., Argiropoulos B., Petriv O.I., Griffith M., Heuser M., Yung E., Piper J., Delaney A., Prabhu A.L., Zhao Y.J., McDonald H., Zeng T., Hirst M., Hansen C.L., Marra M.A., Humphries R.K. In-depth characterization of the microRNA transcriptome in a leukemia progression model. Genome Research 2008, 18:1787-1797.
-
(2008)
Genome Research
, vol.18
, pp. 1787-1797
-
-
Kuchenbauer, F.1
Morin, R.D.2
Argiropoulos, B.3
Petriv, O.I.4
Griffith, M.5
Heuser, M.6
Yung, E.7
Piper, J.8
Delaney, A.9
Prabhu, A.L.10
Zhao, Y.J.11
McDonald, H.12
Zeng, T.13
Hirst, M.14
Hansen, C.L.15
Marra, M.A.16
Humphries, R.K.17
-
15
-
-
0037197803
-
Identification of tissue-specific microRNAs from mouse
-
Lagos-Quintana M., Rauhut R., Yalcin A., Meyer J., Lendeckel W., Tuschl T. Identification of tissue-specific microRNAs from mouse. Current Biology 2002, 12:735-739.
-
(2002)
Current Biology
, vol.12
, pp. 735-739
-
-
Lagos-Quintana, M.1
Rauhut, R.2
Yalcin, A.3
Meyer, J.4
Lendeckel, W.5
Tuschl, T.6
-
16
-
-
69849100181
-
Evidence for human microRNA-offset RNAs in small RNA sequencing data
-
Langenberger D., Bermudez-Santana C., Hertel J., Hoffmann S., Khaitovich P., Stadler P.F. Evidence for human microRNA-offset RNAs in small RNA sequencing data. Bioinformatics 2009, 25:2298-2301.
-
(2009)
Bioinformatics
, vol.25
, pp. 2298-2301
-
-
Langenberger, D.1
Bermudez-Santana, C.2
Hertel, J.3
Hoffmann, S.4
Khaitovich, P.5
Stadler, P.F.6
-
17
-
-
36448991500
-
Clustal W and clustal X version 2.0
-
Larkin M.A., Blackshields G., Brown N.P., Chenna R., McGettigan P.A., McWilliam H., Valentin F., Wallace I.M., Wilm A., Lopez R., Thompson J.D., Gibson T.J., Higgins D.G. Clustal W and clustal X version 2.0. Bioinformatics 2007, 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
Valentin, F.7
Wallace, I.M.8
Wilm, A.9
Lopez, R.10
Thompson, J.D.11
Gibson, T.J.12
Higgins, D.G.13
-
18
-
-
0347988235
-
Nuclear export of microRNA precursors
-
Lund E., Guttinger S., Calado A., Dahlberg J.E., Kutay U. Nuclear export of microRNA precursors. Science 2004, 303:95-98.
-
(2004)
Science
, vol.303
, pp. 95-98
-
-
Lund, E.1
Guttinger, S.2
Calado, A.3
Dahlberg, J.E.4
Kutay, U.5
-
19
-
-
41649106136
-
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells
-
Morin R.D., O'Connor M.D., Griffith M., Kuchenbauer F., Delaney A., Prabhu A.L., Zhao Y., McDonald H., Zeng T., Hirst M., Eaves C.J., Marra M.A. Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells. Genome Research 2008, 18:610-621.
-
(2008)
Genome Research
, vol.18
, pp. 610-621
-
-
Morin, R.D.1
O'Connor, M.D.2
Griffith, M.3
Kuchenbauer, F.4
Delaney, A.5
Prabhu, A.L.6
Zhao, Y.7
McDonald, H.8
Zeng, T.9
Hirst, M.10
Eaves, C.J.11
Marra, M.A.12
-
20
-
-
33746274670
-
Comprehensive thermodynamic analysis of 3′ double-nucleotide overhangs neighboring Watson-Crick terminal base pairs
-
O'Toole A.S., Miller S., Haines N., Zink M.C., Serra M.J. Comprehensive thermodynamic analysis of 3′ double-nucleotide overhangs neighboring Watson-Crick terminal base pairs. Nucleic Acids Research 2006, 34:3338-3344.
-
(2006)
Nucleic Acids Research
, vol.34
, pp. 3338-3344
-
-
O'Toole, A.S.1
Miller, S.2
Haines, N.3
Zink, M.C.4
Serra, M.J.5
-
21
-
-
41649089309
-
The regulatory activity of microRNA star species has substantial influence on microRNA and 3′ UTR evolution
-
Okamura K., Phillips M.D., Tyler D.M., Duan H., Chou Y.T., Lai E.C. The regulatory activity of microRNA star species has substantial influence on microRNA and 3′ UTR evolution. Nature Structural & Molecular Biology 2008, 15:354-363.
-
(2008)
Nature Structural & Molecular Biology
, vol.15
, pp. 354-363
-
-
Okamura, K.1
Phillips, M.D.2
Tyler, D.M.3
Duan, H.4
Chou, Y.T.5
Lai, E.C.6
-
22
-
-
67349135253
-
High throughput sequencing of microRNAs in chicken somites
-
Rathjen T., Pais H., Sweetman D., Moulton V., Munsterberg A., Dalmay T. High throughput sequencing of microRNAs in chicken somites. FEBS Letters 2009, 583:1422-1426.
-
(2009)
FEBS Letters
, vol.583
, pp. 1422-1426
-
-
Rathjen, T.1
Pais, H.2
Sweetman, D.3
Moulton, V.4
Munsterberg, A.5
Dalmay, T.6
-
23
-
-
34848860582
-
Tissue-dependent paired expression of miRNAs
-
Ro S., Park C., Young D., Sanders K.M., Yan W. Tissue-dependent paired expression of miRNAs. Nucleic Acids Research 2007, 35:5944-5953.
-
(2007)
Nucleic Acids Research
, vol.35
, pp. 5944-5953
-
-
Ro, S.1
Park, C.2
Young, D.3
Sanders, K.M.4
Yan, W.5
-
24
-
-
33845436047
-
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C-elegans
-
Ruby J.G., Jan C., Player C., Axtell M.J., Lee W., Nusbaum C., Ge H., Bartel D.P. Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C-elegans. Cell 2006, 127:1193-1207.
-
(2006)
Cell
, vol.127
, pp. 1193-1207
-
-
Ruby, J.G.1
Jan, C.2
Player, C.3
Axtell, M.J.4
Lee, W.5
Nusbaum, C.6
Ge, H.7
Bartel, D.P.8
-
25
-
-
59649103076
-
A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate
-
Shi W.Y., Hendrix D., Levine M., Haley B. A distinct class of small RNAs arises from pre-miRNA-proximal regions in a simple chordate. Nature Structural & Molecular Biology 2009, 16:183-189.
-
(2009)
Nature Structural & Molecular Biology
, vol.16
, pp. 183-189
-
-
Shi, W.Y.1
Hendrix, D.2
Levine, M.3
Haley, B.4
-
26
-
-
67349157682
-
Tiny RNAs associated with transcription start sites in animals
-
Taft R.J., Glazov E.A., Cloonan N., Simons C., Stephen S., Faulkner G.J., Lassmann T., Forrest A.R.R., Grimmond S.M., Schroder K. Tiny RNAs associated with transcription start sites in animals. Nature Genetics 2009, 41:572-578.
-
(2009)
Nature Genetics
, vol.41
, pp. 572-578
-
-
Taft, R.J.1
Glazov, E.A.2
Cloonan, N.3
Simons, C.4
Stephen, S.5
Faulkner, G.J.6
Lassmann, T.7
Forrest, A.R.R.8
Grimmond, S.M.9
Schroder, K.10
-
27
-
-
73849149037
-
In-depth analysis of Kaposi's sarcoma-associated herpesvirus MicroRNA expression provides insights into the mammalian MicroRNA-processing machinery
-
Umbach J.L., Cullen B.R. In-depth analysis of Kaposi's sarcoma-associated herpesvirus MicroRNA expression provides insights into the mammalian MicroRNA-processing machinery. Journal of Virology 2010, 84:695-703.
-
(2010)
Journal of Virology
, vol.84
, pp. 695-703
-
-
Umbach, J.L.1
Cullen, B.R.2
|