-
1
-
-
33344473656
-
The DEAD-box protein family of RNA helicases
-
DOI 10.1016/j.gene.2005.10.019, PII S0378111905006359
-
Cordin, O., Banroques, J., Tanner, N.K. and Linder, P. (2006) The DEAD-box protein family of RNA helicases. Gene 367, 17-37 (Pubitemid 43286737)
-
(2006)
Gene
, vol.367
, Issue.1-2
, pp. 17-37
-
-
Cordin, O.1
Banroques, J.2
Tanner, N.K.3
Linder, P.4
-
2
-
-
70350089113
-
The mechanism of ATP-dependent RNA unwinding by DEAD box proteins
-
Hilbert, M., Karow, A.R. and Klostermeier, D. (2009) The mechanism of ATP-dependent RNA unwinding by DEAD box proteins. Biol. Chem. 390, 1237-1250
-
(2009)
Biol. Chem.
, vol.390
, pp. 1237-1250
-
-
Hilbert, M.1
Karow, A.R.2
Klostermeier, D.3
-
3
-
-
0035046795
-
The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA
-
DOI 10.1017/S1355838201010135
-
Tsu, C.A., Kossen, K. and Uhlenbeck, O.C. (2001) The Escherichia coli DEAD protein DbpA recognizes a small RNA hairpin in 23S rRNA. RNA 7, 702-709 (Pubitemid 32405867)
-
(2001)
RNA
, vol.7
, Issue.5
, pp. 702-709
-
-
Tsu, C.A.1
Kossen, K.2
Uhlenbeck, O.C.3
-
4
-
-
0036927393
-
The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA
-
Kossen, K., Karginov, F.V. and Uhlenbeck, O.C. (2002) The carboxy-terminal domain of the DExDH protein YxiN is sufficient to confer specificity for 23S rRNA. J. Mol. Biol. 324, 625-636
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 625-636
-
-
Kossen, K.1
Karginov, F.V.2
Uhlenbeck, O.C.3
-
5
-
-
54549123661
-
The putative RNase P motif in the DEAD box helicase Hera is dispensable for efficient interaction with RNA and helicase activity
-
Linden, M.H., Hartmann, R.K. and Klostermeier, D. (2008) The putative RNase P motif in the DEAD box helicase Hera is dispensable for efficient interaction with RNA and helicase activity. Nucleic Acids Res. 36, 5800-5811
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 5800-5811
-
-
Linden, M.H.1
Hartmann, R.K.2
Klostermeier, D.3
-
6
-
-
33947362880
-
Probing the mechanisms of DEAD-box proteins as general RNA chaperones: The C-terminal domain of CYT-19 mediates general recognition of RNA
-
DOI 10.1021/bi0619472
-
Grohman, J.K., Campo, M.D., Bhaskaran, H., Tijerina, P., Lambowitz, A.M. and Russell, R. (2007) Probing the mechanisms of DEAD-box proteins as general RNA chaperones: the C-terminal domain of CYT-19 mediates general recognition of RNA. Biochemistry 46, 3013-3022 (Pubitemid 46449125)
-
(2007)
Biochemistry
, vol.46
, Issue.11
, pp. 3013-3022
-
-
Grohman, J.K.1
Del, C.M.2
Bhaskaran, H.3
Tijerina, P.4
Lambowitz, A.M.5
Russell, R.6
-
7
-
-
37749022256
-
Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro
-
Mohr, G., Del Campo, M., Mohr, S., Yang, Q., Jia, H., Jankowsky, E. and Lambowitz, A.M. (2008) Function of the C-terminal domain of the DEAD-box protein Mss116p analyzed in vivo and in vitro. J. Mol. Biol. 375, 1344-1364
-
(2008)
J. Mol. Biol.
, vol.375
, pp. 1344-1364
-
-
Mohr, G.1
Del Campo, M.2
Mohr, S.3
Yang, Q.4
Jia, H.5
Jankowsky, E.6
Lambowitz, A.M.7
-
8
-
-
69749126977
-
Structure of the yeast DEAD-box protein Mss116p reveals two wedges that crimp RNAMol
-
Del Campo, M. and Lambowitz, A.M. (2009) Structure of the yeast DEAD-box protein Mss116p reveals two wedges that crimp RNAMol. Cell 35, 598-609
-
(2009)
Cell
, vol.35
, pp. 598-609
-
-
Del Campo, M.1
Lambowitz, A.M.2
-
9
-
-
0033214805
-
Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: Delineation of a novel sub-family of bacterial DEAD proteins
-
DOI 10.1093/nar/27.19.3811
-
Kossen, K. and Uhlenbeck, O.C. (1999) Cloning and biochemical characterization of Bacillus subtilis YxiN, a DEAD protein specifically activated by 23S rRNA: delineation of a novel sub-family of bacterial DEAD proteins. Nucleic Acids Res. 27, 3811-3820 (Pubitemid 29454429)
-
(1999)
Nucleic Acids Research
, vol.27
, Issue.19
, pp. 3811-3820
-
-
Kossen, K.1
Uhlenbeck, O.C.2
-
10
-
-
33646883060
-
The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold
-
Wang, S., Hu, Y., Overgaard, M.T., Karginov, F.V., Uhlenbeck, O.C. and McKay, D.B. (2006) The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold. RNA 12, 959-967
-
(2006)
RNA
, vol.12
, pp. 959-967
-
-
Wang, S.1
Hu, Y.2
Overgaard, M.T.3
Karginov, F.V.4
Uhlenbeck, O.C.5
McKay, D.B.6
-
11
-
-
37749032415
-
The Bacillus subtilis RNA helicase YxiN is distended in solution
-
Wang, S., Overgaard, M.T., Hu, Y. and McKay, D.B. (2007) The Bacillus subtilis RNA helicase YxiN is distended in solution. Biophys. J. 94, L01-L03
-
(2007)
Biophys. J.
, vol.94
-
-
Wang, S.1
Overgaard, M.T.2
Hu, Y.3
McKay, D.B.4
-
12
-
-
38649106732
-
Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase
-
Theissen, B., Karow, A.R., Kohler, J., Gubaev, A. and Klostermeier, D. (2008) Cooperative binding of ATP and RNA induces a closed conformation in a DEAD box RNA helicase. Proc. Natl. Acad. Sci. U.S.A. 105, 548-553
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 548-553
-
-
Theissen, B.1
Karow, A.R.2
Kohler, J.3
Gubaev, A.4
Klostermeier, D.5
-
13
-
-
0035852638
-
Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii
-
Story, R.M., Li, H. and Abelson, J.N. (2001) Crystal structure of a DEAD box protein from the hyperthermophile Methanococcus jannaschii. Proc. Natl. Acad. Sci. U.S.A. 98, 1465-1470
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 1465-1470
-
-
Story, R.M.1
Li, H.2
Abelson, J.N.3
-
14
-
-
33646017369
-
Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa
-
Sengoku, T., Nureki, O., Nakamura, A., Kobayashi, S. and Yokoyama, S. (2006) Structural basis for RNA unwinding by the DEAD-box protein Drosophila Vasa. Cell 125, 287-300
-
(2006)
Cell
, vol.125
, pp. 287-300
-
-
Sengoku, T.1
Nureki, O.2
Nakamura, A.3
Kobayashi, S.4
Yokoyama, S.5
-
15
-
-
33749332762
-
Structure of the exon junction core complex with a trapped DEAD-Box ATPase bound to RNA
-
DOI 10.1126/science.1131981
-
Andersen, C.B., Ballut, L., Johansen, J.S., Chamieh, H., Nielsen, K.H., Oliveira, C.L., Pedersen, J.S., Seraphin, B., Le Hir, H. and Andersen, G.R. (2006) Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA. Science 313, 1968-1972 (Pubitemid 44498005)
-
(2006)
Science
, vol.313
, Issue.5795
, pp. 1968-1972
-
-
Andersen, C.B.F.1
Ballut, L.2
Johansen, J.S.3
Chamieh, H.4
Nielsen, K.H.5
Oliveira, C.L.P.6
Pedersen, J.S.7
Seraphin, B.8
Hir, H.L.9
Andersen, G.R.10
-
16
-
-
33747182255
-
The Crystal Structure of the Exon Junction Complex Reveals How It Maintains a Stable Grip on mRNA
-
DOI 10.1016/j.cell.2006.08.006, PII S0092867406010270
-
Bono, F., Ebert, J., Lorentzen, E. and Conti, E. (2006) The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA. Cell 126, 713-725 (Pubitemid 44233638)
-
(2006)
Cell
, vol.126
, Issue.4
, pp. 713-725
-
-
Bono, F.1
Ebert, J.2
Lorentzen, E.3
Conti, E.4
-
17
-
-
58149092125
-
Mechanism of ATP turnover inhibition in the EJC
-
Nielsen, K.H., Chamieh, H., Andersen, C.B., Fredslund, F., Hamborg, K., Le Hir, H. and Andersen, G.R. (2008) Mechanism of ATP turnover inhibition in the EJC. RNA 15, 67-75
-
(2008)
RNA
, vol.15
, pp. 67-75
-
-
Nielsen, K.H.1
Chamieh, H.2
Andersen, C.B.3
Fredslund, F.4
Hamborg, K.5
Le Hir, H.6
Andersen, G.R.7
-
18
-
-
62049084648
-
The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner
-
von Moeller, H., Basquin, C. and Conti, E. (2009) The mRNA export protein DBP5 binds RNA and the cytoplasmic nucleoporin NUP214 in a mutually exclusive manner. Nat. Struct. Mol. Biol. 16, 247-254
-
(2009)
Nat. Struct. Mol. Biol.
, vol.16
, pp. 247-254
-
-
Moeller, H.1
Basquin, C.2
Conti, E.3
-
19
-
-
67449105353
-
The DExD/H-box RNA helicase DDX19 is regulated by an α-helical switch
-
Collins, R., Karlberg, T., Lehtio, L., Schutz, P., van den Berg, S., Dahlgren, L. G., Hammarstrom, M., Weigelt, J. and Schuler, H. (2009) The DExD/H-box RNA helicase DDX19 is regulated by an α-helical switch. J. Biol. Chem. 284, 10296-10300
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 10296-10300
-
-
Collins, R.1
Karlberg, T.2
Lehtio, L.3
Schutz, P.4
Van Den Berg, S.5
Dahlgren, L.G.6
Hammarstrom, M.7
Weigelt, J.8
Schuler, H.9
-
20
-
-
70449584733
-
The DEAD-box helicase YxiN maintains a closed conformation during ATP hydrolysis
-
Aregger, R. and Klostermeier, D. (2009) The DEAD-box helicase YxiN maintains a closed conformation during ATP hydrolysis. Biochemistry 48, 10679-10681
-
(2009)
Biochemistry
, vol.48
, pp. 10679-10681
-
-
Aregger, R.1
Klostermeier, D.2
-
21
-
-
39649096274
-
The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA
-
Henn, A., Cao, W., Hackney, D.D. and De La Cruz, E.M. (2008) The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA. J. Mol. Biol. 377, 193-205
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 193-205
-
-
Henn, A.1
Cao, W.2
Hackney, D.D.3
De La Cruz, E.M.4
-
22
-
-
67949115632
-
A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN
-
Karow, A.R. and Klostermeier, D. (2009) A conformational change in the helicase core is necessary but not sufficient for RNA unwinding by the DEAD box helicase YxiN. Nucleic Acids Res. 37, 4464-4471
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 4464-4471
-
-
Karow, A.R.1
Klostermeier, D.2
-
23
-
-
58149481225
-
ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding
-
Liu, F., Putnam, A. and Jankowsky, E. (2008) ATP hydrolysis is required for DEAD-box protein recycling but not for duplex unwinding. Proc. Natl. Acad. Sci. U.S.A. 51, 20209-20214
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.51
, pp. 20209-20214
-
-
Liu, F.1
Putnam, A.2
Jankowsky, E.3
-
24
-
-
19644362046
-
Escherichia coli DbpA is a 3′→5′ RNA helicase
-
Diges, C.M. and Uhlenbeck, O.C. (2005) Escherichia coli DbpA is a 3′→5′ RNA helicase. Biochemistry 44, 7903-7911
-
(2005)
Biochemistry
, vol.44
, pp. 7903-7911
-
-
Diges, C.M.1
Uhlenbeck, O.C.2
-
25
-
-
77956715760
-
Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif
-
Hardin, J.W., Hu, Y.X. and McKay, D.B. (2010) Structure of the RNA binding domain of a DEAD-box helicase bound to its ribosomal RNA target reveals a novel mode of recognition by an RNA recognition motif. J. Mol. Biol. 402, 412-427
-
(2010)
J. Mol. Biol.
, vol.402
, pp. 412-427
-
-
Hardin, J.W.1
Hu, Y.X.2
McKay, D.B.3
-
26
-
-
29144518356
-
Hydrodynamic characterization of the DEAD-box RNA helicase DbpA
-
Talavera, M.A., Matthews, E.E., Eliason, W.K., Sagi, I., Wang, J., Henn, A. and De La Cruz, E.M. (2006) Hydrodynamic characterization of the DEAD-box RNA helicase DbpA. J. Mol. Biol. 355, 697-707
-
(2006)
J. Mol. Biol.
, vol.355
, pp. 697-707
-
-
Talavera, M.A.1
Matthews, E.E.2
Eliason, W.K.3
Sagi, I.4
Wang, J.5
Henn, A.6
De La Cruz, E.M.7
-
27
-
-
77956926253
-
A structural model for the DEAD box helicase YxiN in solution: Localization of the RNA-binding domain
-
Karow, A.R. and Klostermeier, D. (2010) A structural model for the DEAD box helicase YxiN in solution: localization of the RNA-binding domain. J. Mol. Biol. 402, 629-637
-
(2010)
J. Mol. Biol.
, vol.402
, pp. 629-637
-
-
Karow, A.R.1
Klostermeier, D.2
-
28
-
-
47749123500
-
Crystal structure of the yeast eIF4A-eIF4G complex: An RNA-helicase controlled by protein-protein interactions
-
Schutz, P., Bumann, M., Oberholzer, A.E., Bieniossek, C., Trachsel, H., Altmann, M. and Baumann, U. (2008) Crystal structure of the yeast eIF4A-eIF4G complex: an RNA-helicase controlled by protein-protein interactions. Proc. Natl. Acad. Sci. U.S.A. 105, 9564-9569
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 9564-9569
-
-
Schutz, P.1
Bumann, M.2
Oberholzer, A.E.3
Bieniossek, C.4
Trachsel, H.5
Altmann, M.6
Baumann, U.7
-
29
-
-
50649101663
-
DNA topoisomerases: Harnessing and constraining energy to govern chromosome topology
-
Schoeffler, A.J. and Berger, J.M. (2008) DNA topoisomerases: harnessing and constraining energy to govern chromosome topology. Q. Rev. Biophys. 41, 41-101
-
(2008)
Q. Rev. Biophys.
, vol.41
, pp. 41-101
-
-
Schoeffler, A.J.1
Berger, J.M.2
-
30
-
-
0000576165
-
DNA gyrase: An enzyme that introduces superhelical turns into DNA
-
Gellert, M., Mizuuchi, K., O'Dea, M.H. and Nash, H.A. (1976) DNA gyrase: an enzyme that introduces superhelical turns into DNA. Proc. Natl. Acad. Sci. U.S.A. 73, 3872-3876
-
(1976)
Proc. Natl. Acad. Sci. U.S.A.
, vol.73
, pp. 3872-3876
-
-
Gellert, M.1
Mizuuchi, K.2
O'Dea, M.H.3
Nash, H.A.4
-
31
-
-
0038782340
-
DNA gyrase: Subunit structure and ATPase activity of the purified enzyme
-
Mizuuchi, K., O'Dea, M.H. and Gellert, M. (1978) DNA gyrase: subunit structure and ATPase activity of the purified enzyme. Proc. Natl. Acad. Sci. U.S.A. 75, 5960-5963
-
(1978)
Proc. Natl. Acad. Sci. U.S.A.
, vol.75
, pp. 5960-5963
-
-
Mizuuchi, K.1
O'Dea, M.H.2
Gellert, M.3
-
32
-
-
0035830951
-
Locking the ATP-operated clamp of DNA gyrase: Probing the mechanism of strand passage
-
Williams, N.L., Howells, A.J. and Maxwell, A. (2001) Locking the ATP-operated clamp of DNA gyrase: probing the mechanism of strand passage. J. Mol. Biol. 306, 969-984
-
(2001)
J. Mol. Biol.
, vol.306
, pp. 969-984
-
-
Williams, N.L.1
Howells, A.J.2
Maxwell, A.3
-
33
-
-
0033607152
-
Locking the DNA gate of DNA gyrase: Investigating the effects on DNA cleavage and ATP hydrolysis
-
Williams, N.L. and Maxwell, A. (1999) Locking the DNA gate of DNA gyrase: investigating the effects on DNA cleavage and ATP hydrolysis. Biochemistry 38, 14157-14164
-
(1999)
Biochemistry
, vol.38
, pp. 14157-14164
-
-
Williams, N.L.1
Maxwell, A.2
-
34
-
-
0033550077
-
Probing the two-gate mechanism of DNA gyrase using cysteine cross-linking
-
Williams, N.L. and Maxwell, A. (1999) Probing the two-gate mechanism of DNA gyrase using cysteine cross-linking. Biochemistry 38, 13502-13511
-
(1999)
Biochemistry
, vol.38
, pp. 13502-13511
-
-
Williams, N.L.1
Maxwell, A.2
-
35
-
-
2442611949
-
The C-terminal domain of DNA gyrase A adopts a DNA-bending β-pinwheel fold
-
Corbett, K.D., Shultzaberger, R.K. and Berger, J.M. (2004) The C-terminal domain of DNA gyrase A adopts a DNA-bending β-pinwheel fold. Proc. Natl. Acad. Sci. U.S.A. 101, 7293-7298
-
(2004)
Proc. Natl. Acad. Sci. U.S.A.
, vol.101
, pp. 7293-7298
-
-
Corbett, K.D.1
Shultzaberger, R.K.2
Berger, J.M.3
-
36
-
-
69449106505
-
The DNA Gate of Bacillus subtilis gyrase is predominantly in the closed conformation during the DNA supercoiling reaction
-
Gubaev, A., Hilbert, M. and Klostermeier, D. (2009) The DNA Gate of Bacillus subtilis gyrase is predominantly in the closed conformation during the DNA supercoiling reaction. Proc. Natl. Acad. Sci. U.S.A. 106, 13278-13283
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 13278-13283
-
-
Gubaev, A.1
Hilbert, M.2
Klostermeier, D.3
-
37
-
-
0000301456
-
Crystal structure of the breakage-reunion domain of DNA gyrase
-
DOI 10.1038/42294
-
Morais Cabral, J.H., Jackson, A.P., Smith, C.V., Shikotra, N., Maxwell, A. and Liddington, R.C. (1997) Crystal structure of the breakage-reunion domain of DNA gyrase. Nature 388, 903-906 (Pubitemid 27377066)
-
(1997)
Nature
, vol.388
, Issue.6645
, pp. 903-906
-
-
Morais, C.J.H.1
Jackson, A.P.2
Smith, C.V.3
Shikotra, N.4
Maxwell, A.5
Liddington, R.C.6
-
38
-
-
71549138377
-
A crystal structure of the bifunctional antibiotic simocyclinone D8, bound to DNA gyrase
-
Edwards, M.J., Flatman, R.H., Mitchenall, L.A., Stevenson, C.E., Le, T.B., Clarke, T.A., McKay, A.R., Fiedler, H.P., Buttner, M.J., Lawson, D.M. and Maxwell, A. (2009) A crystal structure of the bifunctional antibiotic simocyclinone D8, bound to DNA gyrase. Science 326, 1415-1418
-
(2009)
Science
, vol.326
, pp. 1415-1418
-
-
Edwards, M.J.1
Flatman, R.H.2
Mitchenall, L.A.3
Stevenson, C.E.4
Le, T.B.5
Clarke, T.A.6
McKay, A.R.7
Fiedler, H.P.8
Buttner, M.J.9
Lawson, D.M.10
Maxwell, A.11
-
39
-
-
0037870269
-
Stabilization of eukaryotic topoisomerase II-DNA cleavage complexes
-
Wilstermann, A.M. and Osheroff, N. (2003) Stabilization of eukaryotic topoisomerase II-DNA cleavage complexes. Curr. Top. Med. Chem. 3, 321-338
-
(2003)
Curr. Top. Med. Chem.
, vol.3
, pp. 321-338
-
-
Wilstermann, A.M.1
Osheroff, N.2
-
40
-
-
0026428621
-
Crystal structure of an N-terminal fragment of the DNA gyrase B protein
-
Wigley, D.B., Davies, G.J., Dodson, E.J., Maxwell, A. and Dodson, G. (1991) Crystal structure of an N-terminal fragment of the DNA gyrase B protein. Nature 351, 624-629 (Pubitemid 21896650)
-
(1991)
Nature
, vol.351
, Issue.6328
, pp. 624-629
-
-
Wigley, D.B.1
Davies, G.J.2
Dodson, E.J.3
Maxwell, A.4
Dodson, G.5
-
41
-
-
0030444614
-
Probing the role of the ATP-operated clamp in the strand-passage reaction of DNA gyrase
-
DOI 10.1093/nar/24.24.4868
-
Tingey, A.P. and Maxwell, A. (1996) Probing the role of the ATP-operated clamp in the strand-passage reaction of DNA gyrase. Nucleic Acids Res. 24, 4868-4873 (Pubitemid 27007889)
-
(1996)
Nucleic Acids Research
, vol.24
, Issue.24
, pp. 4868-4873
-
-
Tingey, A.P.1
Maxwell, A.2
-
42
-
-
0033587704
-
A model for the mechanism of strand passage by DNA gyrase
-
Kampranis, S.C., Bates, A.D. and Maxwell, A. (1999) A model for the mechanism of strand passage by DNA gyrase. Proc. Natl. Acad. Sci. U.S.A. 96, 8414-8419
-
(1999)
Proc. Natl. Acad. Sci. U.S.A.
, vol.96
, pp. 8414-8419
-
-
Kampranis, S.C.1
Bates, A.D.2
Maxwell, A.3
|