Catalytic properties and classification of cellobiose dehydrogenases from ascomycetes

Applied and Environmental Microbiology

Volumn 77, Issue 5, 2011, Pages 1804-1815

  Harreither, Wolfgang ^a   Sygmund, Christoph ^a   Augustin, Manfred ^a   Narciso, Melanie ^a   Rabinovich, Mikhail L ^b   Gorton, Lo ^c   Haltrich, Dietmar ^a   Ludwig, Roland ^a  

^a UNIVERSITY OF NATURAL RESOURCES AND LIFE SCIENCES   (Austria)

^b BACH INSTITUTE OF BIOCHEMISTRY   (Russian Federation)

^c LUND UNIVERSITY   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ALKALINE PH; BIOCHEMICAL DATA; CARBOHYDRATE-BINDING MODULES; CATALYTIC PROPERTIES; CELLOBIOSE; CELLOBIOSE DEHYDROGENASE; CLASS II; ENCODING GENES; EXTRACELLULAR; FLAVOCYTOCHROME; GENOME SEQUENCING PROJECTS; INTRA-MOLECULAR ELECTRON TRANSFER; LIGNOCELLULOSE DEGRADATION; MATURE PROTEINS; NEUROSPORA CRASSA; PH OPTIMA; PH-DEPENDENT; SUBSTRATE SPECIFICITY; THERMOPHILUS; WHITE ROT;

ALKALINITY; CARBOHYDRATES; CATALYSTS; CELLULOSE; DNA SEQUENCES; ENZYME ACTIVITY; ENZYMES; GENES;

FUNGI;

CELLOBIOSE QUINONE OXIDOREDUCTASE; CELLOBIOSE-QUINONE OXIDOREDUCTASE; CELLULOSE; FUNGAL DNA; OXIDOREDUCTASE;

CATALYSIS; CELLULOSE; ENZYME ACTIVITY; FUNGUS; GENETIC ANALYSIS; GENOME; PH; PROTEIN; SUBSTRATE;

AMINO ACID SEQUENCE; ARTICLE; ASCOMYCETES; CHEMISTRY; CLASSIFICATION; CULTURE MEDIUM; DNA SEQUENCE; ENZYME SPECIFICITY; ENZYMOLOGY; GENETICS; ISOLATION AND PURIFICATION; KINETICS; METABOLISM; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE;

AMINO ACID SEQUENCE; ASCOMYCOTA; BASE SEQUENCE; CARBOHYDRATE DEHYDROGENASES; CELLULOSE; CULTURE MEDIA; DNA, FUNGAL; KINETICS; MOLECULAR SEQUENCE DATA; SEQUENCE ANALYSIS, DNA; SUBSTRATE SPECIFICITY;

ASCOMYCOTA; BASIDIOMYCOTA; CHAETOMIUM ATROBRUNNEUM; CORYNASCUS; DICHOMERA; FUNGI; HYPOXYLON HAEMATOSTROMA; NEUROSPORA CRASSA; STACHYBOTRYS BISBYI;

EID: 79953182351     PISSN: 00992240     EISSN: 10985336     Source Type: Journal    
DOI: 10.1128/AEM.02052-10     Document Type: Article

References (46)

1. Baldrian, P., and V. Valaskova. 2008. Degradation of cellulose by basidiomycetous fungi. FEMS Microbiol. Rev. 32:501-521.
2. Baminger, U., B. Nidetzky, K. D. Kulbe, and D. Haltrich. 1999. A simple assay for measuring cellobiose dehydrogenase activity in the presence of laccase. J. Microbiol. Methods 35:253-259.
3. Bradford, M. M. 1976. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 72:248-254.
4. Canevascini, G., P. Borer, and J. L. Dreyer. 1991. Cellobiose dehydrogenases of Sporotrichum (Chrysosporium) thermophile. Eur. J. Biochem. 198:43-52.
5. Coudray, M. R., G. Canevascini, and H. Meier. 1982. Characterization of a cellobiose dehydrogenase in the cellulolytic fungus Sporotrichum (Chrysosporium) thermophile. Biochem. J. 203:277-284.
6. Dean, R. A., et al. 2005. The genome sequence of the rice blast fungus Magnaporthe grisea. Nature 434:980-986.
7. Dekker, R. F. H. 1980. Induction and characterization of a cellobiose dehydrogenase produced by a species of Monilia. J. Gen. Microbiol. 120:309-316.
8. Desriani, S. Ferri, and K. Sode. 2010. Functional expression of Phanerochaete chrysosporium cellobiose dehydrogenase flavin domain in Escherichia coli. Biotechnol. Lett. 32:855-859.
9. Dragosits, M., et al. 2009. The effect of temperature on the proteome of recombinant Pichia pastoris. J. Proteome Res. 8:1380-1392.
10. Espagne, E., et al. 2008. The genome sequence of the model ascomycete fungus Podospora anserina. Genome Biol. 9:R77.
11. Fähnrich, P., and K. Irrgang. 1982. Conversion of cellulose to sugars and cellobionic acid by the extracellular enzyme system of Chaetomium cellulolyticum. Biotechnol. Lett. 4:775-780.
12. Fang, J., Y. Qu, and P. Gao. 1997. Wide distribution of cellobiose-oxidizing enzymes in wood-rot fungus indicates a physiological importance in lignocellulosics degradation. Biotechnol. Tech. 11:195-197.
13. Galagan, J. E., et al. 2003. The genome sequence of the filamentous fungus Neurospora crassa. Nature 422:859-868.
14. Hallberg, B. M., G. Henriksson, G. Pettersson, and C. Divne. 2002. Crystal structure of the flavoprotein domain of the extracellular flavocytochrome cellobiose dehydrogenase. J. Mol. Biol. 315:421-434.
15. Harreither, W., V. Coman, R. Ludwig, D. Haltrich, and L. Gorton. 2007. Investigation of graphite electrodes modified with cellobiose dehydrogenase from the ascomycete Myriococcum thermophilum. Electroanalysis 19:172- 180.
16. Henriksson, G., A. Salumets, C. Divne, and G. Petersson. 1997. Studies of cellulose binding by cellobiose dehydrogenase and a comparison with cellobiohydrolase 1. Biochem. J. 324:833-838.
17. Hyde, S. M., and P. M. Wood. 1997. A mechanism for production of hydroxyl radicals by the brown-rot fungus Coniophora puteana: Fe(III) reduction by cellobiose dehydrogenase and Fe(II) oxidation at a distance from the hyphae. Microbiology 143:259-266.
18. Karapetyan, K. N., et al. 2006. Properties of neutral cellobiose dehydrogenase from the ascomycete Chaetomium sp. INBI 2-26(-) and comparison with basidiomycetous cellobiose dehydrogenases. J. Biotechnol. 121:34-48.
19. Kellner, H., and M. Vandenbol. 2010. Fungi unearthed: transcripts encoding lignocellulolytic and chitinolytic enzymes in forest soil. PLoS One 5:e10971.
20. Kremer, S. M., and P. M. Wood. 1992. Production of Fenton's reagent by cellobiose oxidase from cellulolytic cultures of Phanerochaete chrysosporium. Eur. J. Biochem. 208:807-814.
21. 14C-labelled synthetic lignin and extracellular enzyme activities of the wood-colonizing ascomycetes Xylaria hypoxylon and Xylaria polymorpha. Appl. Microbiol. Biotechnol. 69:573-579.
22. Liu, D., S. Coloe, R. Baird, and J. Pederson. 2000. Rapid mini-preparation of fungal DNA for PCR. J. Clin. Microbiol. 38:471.
23. Ludwig, R., and D. Haltrich. 2003. Optimisation of cellobiose dehydrogenase production by the fungus Sclerotium (Athelia) rolfsii. Appl. Microbiol. Biotechnol. 61:32-39.
24. Ludwig, R., W. Harreither, F. Tasca, and L. Gorton. 2010. Cellobiose dehydrogenase: a versatile catalyst for electrochemical applications. ChemPhys-Chem 11:2674-2697.
25. Ludwig, R., et al. 2004. Characterisation of cellobiose dehydrogenases from the white-rot fungi Trametes pubescens and Trametes villosa. Appl. Microbiol. Biotechnol. 64:213-222.
26. Mansfield, S. D., E. De Jong, and J. N. Saddler. 1997. Cellobiose dehydrogenase, an active agent in cellulose depolymerization. Appl. Environ. Microbiol. 63:3804-3809.
27. Mason, M. G., M. T. Wilson, A. Ball, and P. Nicholls. 2002. Oxygen reduction by cellobiose oxidoreductase: the role of the haem group. FEBS Lett. 518:29-32.
28. McIlvaine, T. C. 1921. A buffer solution for colorimetric comparison. J. Biol. Chem. 49:183-186.
29. Morley, K. L., and R. J. Kazlauskas. 2005. Improving enzyme properties: when are closer mutations better? Trends Biotechnol. 23:231-237.
30. Nowrousian, M., et al. 2010. De novo assembly of a 40 Mb eukaryotic genome from short sequence reads: Sordaria macrospora, a model organism for fungal morphogenesis. PLoS Genet. 6:e1000891.
31. Rzhetsky, A., and M. Nei. 1992. A simple method for estimating and testing minimum evolution trees. Mol. Biol. Evol. 9:945-967.
32. Sachslehner, A. 1997. Production of hemicellulose- and cellulose-degrading enzymes by various strains of Sclerotium rolfsii. Appl. Biochem. Biotechnol. 63-65:189-201.
33. Schou, C., M. H. Christensen, and M. Schülein. 1998. Characterization of a cellobiose dehydrogenase from Humicola insolens. Biochem. J. 330:565-571.
34. Shary, S., S. A. Ralph, and K. E. Hammel. 2007. New insights into the ligninolytic capability of a wood decay ascomycete. Appl. Environ. Microbiol. 73:6691-6694.
35. Subramaniam, S. S., S. R. Nagalla, and V. Renganathan. 1999. Cloning and characterization of a thermostable cellobiose dehydrogenase from Sporotrichum thermophile. Arch. Biochem. Biophys. 365:223-230.
36. Tamura, K., J. Dudley, M. Nei, and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
37. Tian, C., et al. 2009. Systems analysis of plant cell wall degradation by the model filamentous fungus Neurospora crassa. Proc. Natl. Acad. Sci. U. S. A. 106:22157-22162.
38. Tuomela, M., M. Vikman, A. Hatakka, and M. Itävaara. 2000. Biodegradation of lignin in a compost environment: a review. Biores. Technol. 72:169- 183.
39. Vasil'chenko, L. G., V. V. Khromonygina, K. N. Karapetyan, O. V. Vasilenko, and M. L. Rabinovich. 2005. Cellobiose dehydrogenase formation by filamentous fungus Chaetomium sp. INBI 2-26(-). J. Biotechnol. 119:44-59.
40. Worrall, J. J., S. E. Anagnost, and R. A. Zabel. 1997. Comparison of wood decay among diverse lignicolous fungi. Mycologia 89:199-219.
41. Xu, F., et al. 2001. Humicola insolens cellobiose dehydrogenase: cloning, redox chemistry, and "logic gate"-like dual functionality. Enzyme Microb. Technol. 28:744-753.
42. Yoshida, M., et al. 2005. Characterization of carbohydrate-binding cytochrome b-562 from the white-rot fungus Phanerochaete chrysosporium. Appl. Environ. Microbiol. 71:4548-4555.
43. Zamocky, M., B. M. Hallberg, R. Ludwig, C. Divne, and D. Haltrich. 2004. Ancestral gene fusion in cellobiose dehydrogenases reflects a specific evolution of GMC oxidoreductases in fungi. Gene 338:1-14.
44. Zamocky, M., et al. 2006. Cellobiose dehydrogenase-a flavocytochrome from wood-degrading, phytopathogenic and saprotropic fungi. Curr. Protoc. Pept. Sci. 7:255-280.
45. Zamocky, M., et al. 2008. Cloning, sequence analysis and heterologous expression in Pichia pastoris of a gene encoding a thermostable cellobiose dehydrogenase from Myriococcum thermophilum. Prot. Expr. Purif. 59:258- 265.
46. Zhang, N., et al. 2006. An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny. Mycologia 98:1076-1087.