Transcriptional regulation by Asf1: New mechanistic insights from studies of the dna damage response to replication stress

Journal of Biological Chemistry

Volumn 286, Issue 9, 2011, Pages 7082-7092

  Minard, Laura V ^a   Williams, Jessica S ^a,b   Walker, Amelia C ^a   Schultz, Michael C ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ACETYL TRANSFERASE; BINDING DOMAIN; C TERMINUS; CELLULAR RESPONSE; COREPRESSOR COMPLEXES; DE-REPRESSION; DNA DAMAGE RESPONSE; GENE PROMOTER; HYDROXYUREA; MOLECULAR DETERMINANTS; NUCLEOSOMES; RIBONUCLEOTIDE REDUCTASE; S-PHASE; STEADY-STATE LEVEL; TRANSCRIPTIONAL REGULATION;

ACETYLATION; AMINO ACIDS; ENZYME ACTIVITY; GENES;

TRANSCRIPTION;

ACYLTRANSFERASE; CHAPERONE; HISTONE H3; HISTONE H4; LYSINE ACYLTRANSFERASE; PROTEIN ASF1; UNCLASSIFIED DRUG;

ARTICLE; CELL CYCLE S PHASE; CONTROLLED STUDY; DNA DAMAGE; DNA DAMAGE RESPONSE GENE; DNA REPLICATION; GENE; GENE REPRESSION; HISTONE ACETYLATION; NONHUMAN; NUCLEOSOME; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN BINDING; SACCHAROMYCES CEREVISIAE; STEADY STATE; TRANSCRIPTION REGULATION;

ACID PHOSPHATASE; CELL CYCLE PROTEINS; CHROMATIN; DNA DAMAGE; GENE EXPRESSION REGULATION, FUNGAL; GENE LIBRARY; HISTONE ACETYLTRANSFERASES; HISTONES; HYDROXYUREA; MOLECULAR CHAPERONES; NUCLEIC ACID SYNTHESIS INHIBITORS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SACCHAROMYCETALES; STRESS, PHYSIOLOGICAL;

SACCHAROMYCETALES;

EID: 79953173256     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M110.193813     Document Type: Article

References (59)

1. Green, E. M., Antczak, A. J., Bailey, A. O., Franco, A. A., Wu, K. J., Yates, J. R., 3rd, and Kaufman, P. D. (2005) Curr. Biol. 15, 2044-2049
2. Li, Q., Zhou, H., Wurtele, H., Davies, B., Horazdovsky, B., Verreault, A., and Zhang, Z. (2008) Cell 134, 244-255
3. Adkins, M. W., Carson, J. J., English, C. M., Ramey, C. J., and Tyler, J. K. (2007) J. Biol. Chem. 282, 1334-1340
4. Driscoll, R., Hudson, A., and Jackson, S. P. (2007) Science 315, 649-652
5. Han, J., Zhou, H., Horazdovsky, B., Zhang, K., Xu, R. M., and Zhang, Z. (2007) Science 315, 653-655
6. Tsubota, T., Berndsen, C. E., Erkmann, J. A., Smith, C. L., Yang, L., Freitas, M. A., Denu, J. M., and Kaufman, P. D. (2007) Mol. Cell 25, 703-712
7. Lin, L. J., Minard, L. V., Johnston, G. C., Singer, R. A., and Schultz, M. C. (2010) Mol. Cell Biol. 30, 1116-1129
8. Schwabish, M. A., and Struhl, K. (2006) Mol. Cell 22, 415-422
9. Rufiange, A., Jacques, P. E., Bhat, W., Robert, F., and Nourani, A. (2007) Mol. Cell 27, 393-405
10. Williams, S. K., Truong, D., and Tyler, J. K. (2008) Proc. Natl. Acad. Sci. U.S.A. 105, 9000-9005
11. Biddick, R., and Young, E. T. (2009) Yeast 26, 205-220
12. Neumann, H., Hancock, S. M., Buning, R., Routh, A., Chapman, L., Somers, J., Owen-Hughes, T., van Noort, J., Rhodes, D., and Chin, J. W. (2009) Mol. Cell 36, 153-163
13. Korber, P., Barbaric, S., Luckenbach, T., Schmid, A., Schermer, U. J., Blaschke, D., and Hörz, W. (2006) J. Biol. Chem. 281, 5539-5545
14. Adkins, M. W., Howar, S. R., and Tyler, J. K. (2004) Mol. Cell 14, 657-666
15. Natsume, R., Eitoku, M., Akai, Y., Sano, N., Horikoshi, M., and Senda, T. (2007) Nature 446, 338-341
16. Adkins, M. W., Williams, S. K., Linger, J., and Tyler, J. K. (2007) Mol. Cell Biol. 27, 6372-6382
17. Huang, M., Zhou, Z., and Elledge, S. J. (1998) Cell 94, 595-605
18. Li, B., and Reese, J. C. (2001) J. Biol. Chem. 276, 33788-33797
19. Zhang, Z., and Reese, J. C. (2004) J. Biol. Chem. 279, 39240-39250
20. Sharma, V. M., Tomar, R. S., Dempsey, A. E., and Reese, J. C. (2007) Mol. Cell Biol. 27, 3199-3210
21. Nourani, A., Utley, R. T., Allard, S., and Côté, J. (2004) EMBO J. 23, 2597-2607
22. Brachmann, C. B., Davies, A., Cost, G. J., Caputo, E., Li, J., Hieter, P., and Boeke, J. D. (1998) Yeast 14, 115-132
23. Winzeler, E. A., Shoemaker, D. D., Astromoff, A., Liang, H., Anderson, K., Andre, B., Bangham, R., Benito, R., Boeke, J. D., Bussey, H., Chu, A. M., Connelly, C., Davis, K., Dietrich, F., Dow, S. W., El Bakkoury, M., Foury, F., Friend, S. H., Gentalen, E., Giaever, G., Hegemann, J. H., Jones, T., Laub, M., Liao, H., Liebundguth, N., Lockhart, D. J., Lucau-Danila, A., Lussier, M., M'Rabet, N., Menard, P., Mittmann, M., Pai, C., Rebischung, C., Revuelta, J. L., Riles, L., Roberts, C. J., Ross-MacDonald, P., Scherens, B., Snyder, M., Sookhai-Mahadeo, S., Storms, R. K., Véronneau, S., Voet, M., Volckaert, G., Ward, T. R., Wysocki, R., Yen, G. S., Yu, K., Zimmermann, K., Philippsen, P., Johnston, M., and Davis, R. W. (1999) Science 285, 901-906
24. Longtine, M. S., McKenzie, A., 3rd, Demarini, D. J., Shah, N. G., Wach, A., Brachat, A., Philippsen, P., and Pringle, J. R. (1998) Yeast 14, 953-961
25. Goldstein, A. L., and McCusker, J. H. (1999) Yeast 15, 1541-1553
26. Treco, D. A., and Lundblad, V. (1993) in Current Protocols in Molecular Biology (Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K., eds) Vol. 2, pp. 13.11.11-13.11.17, John Wiley and Sons, New York
27. Friis, R. M., Wu, B. P., Reinke, S. N., Hockman, D. J., Sykes, B. D., and Schultz, M. C. (2009) Nucleic Acids Res. 37, 3969-3980
28. Ramaswamy, V., Williams, J. S., Robinson, K. M., Sopko, R. L., and Schultz, M. C. (2003) Mol. Cell Biol. 23, 9136-9149
29. Aparicio, O., Geisberg, J. V., and Struhl, K. (2004) in Current Protocols in Cell Biology (Bonifacino, J. S., Dasso, M., Harford, J. B., Lippincott-Schwartz, J., and Yamada, K. M., eds) pp. 17.7.1-17.7.23, John Wiley & Sons, Inc., New York
30. Parnas, O., Zipin-Roitman, A., Mazor, Y., Liefshitz, B., Ben-Aroya, S., and Kupiec, M. (2009) PLoS One 4, e5497
31. Basrai, M. A., Velculescu, V. E., Kinzler, K. W., and Hieter, P. (1999) Mol. Cell Biol. 19, 7041-7049
32. Sharma, V. M., Li, B., and Reese, J. C. (2003) Genes Dev. 17, 502-515
33. Zhang, Z., and Reese, J. C. (2004) EMBO J. 23, 2246-2257
34. Wade, S. L., Poorey, K., Bekiranov, S., and Auble, D. T. (2009) EMBO J. 28, 2919-2931
35. Allen, J. B., Zhou, Z., Siede, W., Friedberg, E. C., and Elledge, S. J. (1994) Genes Dev. 8, 2401-2415
36. Ramey, C. J., Howar, S., Adkins, M., Linger, J., Spicer, J., and Tyler, J. K. (2004) Mol. Cell Biol. 24, 10313-10327
37. Hu, F., Alcasabas, A. A., and Elledge, S. J. (2001) Genes Dev. 15, 1061-1066
38. Franco, A. A., Lam, W. M., Burgers, P. M., and Kaufman, P. D. (2005) Genes Dev. 19, 1365-1375
39. Sharp, J. A., Rizki, G., and Kaufman, P. D. (2005) Genetics 171, 885-899
40. Aparicio, O. M., Stout, A. M., and Bell, S. P. (1999) Proc. Natl. Acad. Sci. U.S.A. 96, 9130-9135
41. Dubacq, C., Chevalier, A., Courbeyrette, R., Petat, C., Gidrol, X., and Mann, C. (2006) Mol. Genet. Genomics 275, 114-124
42. Huang, M., and Elledge, S. J. (1997) Mol. Cell Biol. 17, 6105-6113
43. Groth, A., Ray-Gallet, D., Quivy, J. P., Lukas, J., Bartek, J., and Almouzni, G. (2005) Mol. Cell 17, 301-311
44. Jasencakova, Z., Scharf, A. N., Ask, K., Corpet, A., Imhof, A., Almouzni, G., and Groth, A. (2010) Mol. Cell 37, 736-743
45. Das, C., Lucia, M. S., Hansen, K. C., and Tyler, J. K. (2009) Nature 459, 113-117
46. Thomas, B. J., and Rothstein, R. (1989) Cell 56, 619-630
47. Mousson, F., Ochsenbein, F., and Mann, C. (2007) Chromosoma 116, 79-93
48. Daganzo, S. M., Erzberger, J. P., Lam, W. M., Skordalakes, E., Zhang, R., Franco, A. A., Brill, S. J., Adams, P. D., Berger, J. M., and Kaufman, P. D. (2003) Curr. Biol. 13, 2148-2158
49. Tamburini, B. A., Carson, J. J., Linger, J. G., and Tyler, J. K. (2006) Genetics 173, 599-610
50. Mousson, F., Lautrette, A., Thuret, J. Y., Agez, M., Courbeyrette, R., Amigues, B., Becker, E., Neumann, J. M., Guerois, R., Mann, C., and Ochsenbein, F. (2005) Proc. Natl. Acad. Sci. U.S.A. 102, 5975-5980
51. English, C. M., Adkins, M. W., Carson, J. J., Churchill, M. E., and Tyler, J. K. (2006) Cell 127, 495-508
52. Han, J., Zhou, H., Li, Z., Xu, R. M., and Zhang, Z. (2007) J. Biol. Chem. 282, 28587-28596
53. Masumoto, H., Hawke, D., Kobayashi, R., and Verreault, A. (2005) Nature 436, 294-298
54. Celic, I., Verreault, A., and Boeke, J. D. (2008) Genetics 179, 1769-1784
55. Thaminy, S., Newcomb, B., Kim, J., Gatbonton, T., Foss, E., Simon, J., and Bedalov, A. (2007) J. Biol. Chem. 282, 37805-37814
56. Gasch, A. P., Huang, M., Metzner, S., Botstein, D., Elledge, S. J., and Brown, P. O. (2001) Mol. Biol. Cell 12, 2987-3003
57. Recht, J., Tsubota, T., Tanny, J. C., Diaz, R. L., Berger, J. M., Zhang, X., Garcia, B. A., Shabanowitz, J., Burlingame, A. L., Hunt, D. F., Kaufman, P. D., and Allis, C. D. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 6988-6993
58. Pondugula, S., Neef, D. W., Voth, W. P., Darst, R. P., Dhasarathy, A., Reynolds, M. M., Takahata, S., Stillman, D. J., and Kladde, M. P. (2009) Mol. Cell Biol. 29, 4891-4905
59. Kaplan, T., Liu, C. L., Erkmann, J. A., Holik, J., Grunstein, M., Kaufman, P. D., Friedman, N., and Rando, O. J. (2008) PLoS Genet. 4, e1000270