Cloning and characterization of two new Class III peroxidase genes from Catharanthus roseus

Plant Physiology and Biochemistry

Volumn 49, Issue 4, 2011, Pages 404-412

  Kumar, Santosh ^a   Jaggi, Monika ^a   Taneja, Jyoti ^a   Sinha, Alok Krishna ^a  

^a NATIONAL INSTITUTE OF PLANT GENOME RESEARCH   (India)

Author keywords

Abiotic stress; Catharanthus roseus; Peroxidases; Sub cellular localization

Indexed keywords

COMPLEMENTARY DNA; NUCLEOTIDE; PEROXIDASE; VEGETABLE PROTEIN;

ADAPTATION; AMINO ACID SEQUENCE; ARTICLE; CATHARANTHUS; CHEMICAL STRUCTURE; CHEMISTRY; DESICCATION; DOWN REGULATION; FLOWER; GENE EXPRESSION; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MICROSCOPY; MOLECULAR CLONING; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGICAL STRESS; PLANT GENE; PLANT STEM; POLYMERASE CHAIN REACTION; SALT TOLERANCE;

ADAPTATION, PHYSIOLOGICAL; AMINO ACID SEQUENCE; CATHARANTHUS; CLONING, MOLECULAR; DESICCATION; DNA, COMPLEMENTARY; DOWN-REGULATION; FLOWERS; GENE EXPRESSION; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; MICROSCOPY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOLECULAR STRUCTURE; NUCLEOTIDES; PEROXIDASE; PHYLOGENY; PLANT PROTEINS; PLANT STEMS; POLYMERASE CHAIN REACTION; SALT-TOLERANCE; STRESS, PHYSIOLOGICAL;

CATHARANTHUS ROSEUS;

EID: 79953049581     PISSN: 09819428     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plaphy.2011.01.012     Document Type: Article

References (43)

1. Passardi F., Cosio C., Penel C., Dunand C. Peroxidases have more functions than a Swiss army knife. Plant Cell Rep. 2005, 24:255-265.
2. Cosio C., Dunand C. Specific functions of individual class III peroxidase genes. J. Exp. Bot. 2009, 60:391-408.
3. Hinnman R.L., Lang J. Peroxidase-catalyzed oxidation of indole-3-acetic acid. Biochemistry 1965, 4:144-158.
4. Lewis N.G., Yamamoto E. Lignin: occurrence, biogenesis and biodegradation. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1990, 41:455-496.
5. Bernards M.A., Fleming W.D., Llewellyn D.B., Priefer R., Yang X., Sabatino A., Plourde G.L. Biochemical characterization of the suberin-associated anionic peroxidase of potato (Solanum tuberosum L.). Plant Physiol. 1999, 121:135-145.
6. Passardi F., Penel C., Dunand C. Performing the paradoxical: how plant peroxidases modify the cell wall. Trends Plant Sci. 2004, 9:534-540.
7. Lavid N., Schwartz A., Yarden O., Tel-Or E. The involvement of polyphenols and peroxidase activities in heavy-metal accumulation by epidermal glands of the waterlily (Nymphaeaceae). Planta 2001, 212:323-331.
8. Agostini E., Coniglio M.S., Milrad S.R., Tigier H.A., Giulietti A.M. Phytoremediation of 2,4-dichlorophenol by Brassica napus hairy root cultures. Biotechnol. Appl. Biochem. 2003, 37:139-144.
9. Kristensen B.K., Bloch H., Rasmussen S.K. Barley coleoptile peroxidases. Purification, molecular cloning, and induction by pathogens. Plant Physiol. 1999, 120:501-512.
10. Liu G., Sheng X., Greenshields D.L., Ogieglo A., Kaminskyj S., Selvaraj G., Wei Y. Profiling of wheat class III peroxidase genes derived from powdery mildew-attacked epidermis reveals distinct sequence-associated expression patterns. Mol. Plant Microbe. Interact. 2005, 18:730-741.
11. Costa M.M.R., Hilliou F., Duarte P., Pereira L.G., Almeida I., Leech M., Memelink J., Barcelo A.R., Sottomayor M. Molecular cloning and characterization of a vacuolar class III peroxidase involved in the metabolism of anticancer alkaloids in Catharanthus roseus. Plant Physiol. 2008, 146:403-417.
12. Welinder K.G., Justesen A.F., Kjærsgåd I.V.H., Jensen R.B., Rasmussen S.K., Jespersen H.M., Duroux L. Structural diversity and transcription of class III peroxidases. FEBS J. 2002, 269:6063-6081.
13. Passardi F., Longet D., Penel C., Dunand C. The class III peroxidase multigene family in rice and its evolution in land plants. Phytochemistry 2004, 65:1879-1893.
14. Kumar S., Dutta A., Sinha A.K., Sen J. Cloning, characterization and localization of a novel basic peroxidase gene from Catharanthus roseus. FEBS J. 2007, 274:1290-1303.
15. Passardi F., Theiler G., Zamocky M., Cosio C., Rouhier N., Teixera F., Margis-Pinheiro M., Ioannidis V., Penel C., Falquet L., Dunand C. PeroxiBase: the peroxidase database. Phytochemistry 2007, 68:1605-1611.
16. Marjamaa K., Hildén K., Kukkola E., Lehtonen M., Holkeri H., Haapaniemi P., Koutaniemi S., Teeri T.H., Fagerstedt K., Lundell T. Cloning, characterization and localization of three novel class III peroxidases in lignifying xylem of Norway spruce (Picea abies). Plant Mol. Biol. 2006, 61:719-732.
17. Welinder K.G. Superfamily of plant, fungal and bacterial peroxidases. Curr. Opin. Struct. Biol. 1992, 2:388-393.
18. Nielsen H., Engelbrecht J., Brunak S., von Heijne G. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 1997, 10:1-6.
19. Schuller D.J., Ban N., Huystee R.B., McPherson A., Poulos T.L. The crystal structure of peanut peroxidase. Structure 1996, 4:311-321.
20. Gajhede M., Schuller D.J., Henriksen A., Smith A.T., Poulos T.L. Crystal structure of horseradish peroxidase C at 2.15 A resolution. Nat. Struct. Biol. 1997, 4:1032-1038.
21. Østergaard L., Teilum K., Mirza O., Mattsson O., Petersen M., Welinder K.G., Mundy J., Gajhede M., Henriksen A. Arabidopsis ATP A2 peroxidase. Expression and high-resolution structure of a plant peroxidase with implications for lignification. Plant Mol. Biol. 2000, 44:231-243.
22. Koua D., Cerutti L., Falquet L., Sigrist C.J.A., Theiler G., Hulo N., Dunand C. Peroxibase: a database with new tools for peroxidase family classification. Nucleic Acids Res. 2009, 37:D261-D266.
23. Klotz K.L., Liu T.T.Y., Liu L., Lagrimini L.M. Expression of the tobacco anionic peroxidase gene is tissue-specific and developmentally regulated. Plant Mol. Biol. 1998, 36:509-520.
24. Boissay E., Delaigue M., Sallaud C., Esnault R., Kahlem G. Predominant expression of a peroxidase gene in staminate flowers of Mercurialis annua. Physiol. Plantarum 1996, 96:251-257.
25. El Mansouri I., Mercado J.A., Santiago-Dómenech N., Pliego-Alfaro F., Valpuestra V., Quesada M.A. Biochemical and phenotypical characterization of transgenic tomato plants overexpressing a basic peroxidase. Physiol. Plantarum 1999, 106:355-362.
26. Quiroga M., Guerrero C., Botella M.A., Barceló A., Amaya I., Medina M.I., Alonso F.J., de Forchetti S.M., Tigier H., Valpuesta V. A tomato peroxidase involved in the synthesis of lignin and suberin. Plant Physiol. 2000, 122:1119-1127.
27. Talas-Oǧras T., Kazan K., Gözkirmizi N. Decreased peroxidase activity in transgenic tobacco and its effects on lignification. Biotechnol. Lett. 2001, 23:267-273.
28. Blee K.A., Choi J.W., Ó Connell A.P., Schung W., Lewis N.G., Bolwell G.P. A lignin specific peroxidase in tobacco whose antisense suppression leads to vascular tissue modification. Phytochemistry 2003, 64:163-176.
29. Gabaldón C., López-Serrano M., Pedreńo M., Barceló A.R. Cloning and molecular characterization of the basic peroxidase isoenzyme from Zinnia elegans, an enzyme involved in lignin biosynthesis. Plant Physiol. 2005, 139:1138-1154.
30. Koutaniemi S., Toikka M.M., Kärkönen A., Mustonen M., Lundell T., Simola L.K., Kilpeläinen I.A., Teeri T.H. Characterization of basic p-coumaryl and coniferyl alcohol oxidasing peroxidases from lignin forming Picea abies suspension culture. Plant Mol. Biol. 2005, 58:141-157.
31. Amaya I., Botella M.A., Calle M., Medina M.I., Heredia A., Bressan R.A., Hasegawa P.M., Quesada M.A., Valpuesta V. Improved germination under osmotic stress or tobacco plants overexpressing a cell wall peroxidase. FEBS Lett. 1999, 457:80-84.
32. Sasaki S., Baba K., Nishida T., Tsutsumi Y., Kondo R. The cationic cell-wall-peroxidase having oxidation ability for polymeric substrate participates in the late stage of lignification of Populus alba L. Plant Mol. Biol. 2006, 62:797-807.
33. Smith C.G., Rodgers M.W., Zimmerlin A., Ferdinando D., Bolwell G.P. Tissue and sub-cellular immunolocalisation of enzymes of lignin synthesis in differentiating and wounded hypocotyl tissue of French bean (Phaseolus vulgaris L.). Planta 1994, 192:155-164.
34. Hwang E.W., Kim K.A., Park S.C., Jeong M.J., Byun M.O., Kwon H.B. Expression profiles of hot pepper (Capsicum annum) genes under cold stress conditions. J. Biosci. 2005, 30:657-667.
35. Kiyosue T., Yamaguchi-Shinozaki K., Shinozaki K. Cloning of cDNAs for genes that are early-responsive to dehydration stress (ERDs) in Arabidopsis thaliana L.: identification of three ERDs as HSP cognate genes. Plant Mol. Biol. 1994, 25:791-798.
36. Menke F.L.H., Kijne J.W., Memelink J. Digging for gene expression levels in Catharanthus roseus: nonradioactive detection of plant mRNA levels. Biochemica 1996, vol. 2:16-18. Boehringer-Mannheim, Mannheim, Germany. M. Leous, K. Matter, C. Schroder, B. Ziebolz (Eds.).
37. Arnold K., Bordoli L., Kopp J., Schwede T. The SWISS-MODEL workspace: a web-based environment for protein structure homology modeling. Bioinformatics 2006, 22:195-201.
38. Guex N., Peitsch M.C. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling. Electrophoresis 1997, 18:2714-2723.
39. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
40. Eck R.V., Dayhoff M.O. Atlas of Protein Sequence and Structure. National Biomedical Research Foundation 1966, Silver Spring, U.S.A.
41. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 1985, 39:783-791.
42. Nei M., Kumar S. Molecular Evolution and Phylogenetics 2000, Oxford University Press, New York, U.S.A.
43. -δδCT method. Methods 2001, 25:402-408.