-
1
-
-
50949131523
-
Comparative analysis of human gut microbiota by barcoded pyrosequencing
-
Andersson AF, Lindberg M, Jakobsson H, Backhed F, Nyren P, Engstrand L. (2008). Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE 3: e2836.
-
(2008)
PLoS ONE
, vol.3
-
-
Andersson, A.F.1
Lindberg, M.2
Jakobsson, H.3
Backhed, F.4
Nyren, P.5
Engstrand, L.6
-
2
-
-
70349211747
-
Coadaptation of Helico-bacter pylori and humans: Ancient history, modern implications
-
Atherton JC, Blaser MJ. (2009). Coadaptation of Helico-bacter pylori and humans: ancient history, modern implications. J Clin Invest 119: 2475-2487.
-
(2009)
J Clin Invest
, vol.119
, pp. 2475-2487
-
-
Atherton, J.C.1
Blaser, M.J.2
-
3
-
-
0031032033
-
Clinical and pathological importance of heterogeneity in vacA, the vacuolating cytotoxin gene of Helicobacter pylori
-
Atherton JC, Peek Jr RM, Tham KT, Cover TL, Blaser MJ. (1997). Clinical and pathological importance of heterogeneity in vacA, the vacuolating cytotoxin gene ofHelicobacterpylori. Gastroenterology112: 92-99. (Pubitemid 27008990)
-
(1997)
Gastroenterology
, vol.112
, Issue.1
, pp. 92-99
-
-
Atherton, J.C.1
Peek Jr., R.M.2
Tham, K.T.3
Cover, T.L.4
Blaser, M.J.5
-
4
-
-
31444449652
-
Molecular analysis of the bacterial microbiota in the human stomach
-
DOI 10.1073/pnas.0506655103
-
Bik EM, Eckburg PB, Gill SR, Nelson KE, Purdom EA, Francois F et al. (2006). Molecular analysis of the bacterial microbiota in the human stomach. Proc Natl Acad Sci USA 103: 732-737. (Pubitemid 43153094)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.3
, pp. 732-737
-
-
Bik, E.M.1
Eckburg, P.B.2
Gill, S.R.3
Nelson, K.E.4
Purdom, E.A.5
Francois, F.6
Perez-Perez, G.7
Blaser, M.J.8
Relman, D.A.9
-
5
-
-
0031905669
-
Helicobacter pylori and gastric inflammation
-
Bodger K, Crabtree JE. (1998). Helicobacter pylori and gastric inflammation. Br Med Bull 54: 139-150. (Pubitemid 28105322)
-
(1998)
British Medical Bulletin
, vol.54
, Issue.1
, pp. 139-150
-
-
Bodger, K.1
Crabtree, J.E.2
-
6
-
-
33748805463
-
Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
-
DOI 10.1128/AEM.00246-06
-
Brodie EL, Desantis TZ, Joyner DC, Baek SM, Larsen JT, Andersen GL et al. (2006). Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol 72: 6288-6298. (Pubitemid 44414663)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.9
, pp. 6288-6298
-
-
Brodie, E.L.1
DeSantis, T.Z.2
Joyner, D.C.3
Baek, S.M.4
Larsen, J.T.5
Andersen, G.L.6
Hazen, T.C.7
Richardson, P.M.8
Herman, D.J.9
Tokunaga, T.K.10
Wan, J.M.11
Firestone, M.K.12
-
7
-
-
33846035747
-
Urban aerosols harbor diverse and dynamic bacterial populations
-
DOI 10.1073/pnas.0608255104
-
Brodie EL, DeSantis TZ, Parker JP, Zubietta IX, Piceno YM, Andersen GL. (2007). Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci USA 104: 299-304. (Pubitemid 46068026)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.1
, pp. 299-304
-
-
Brodie, E.L.1
DeSantis, T.Z.2
Moberg Parker, J.P.3
Zubietta, I.X.4
Piceno, Y.M.5
Andersen, G.L.6
-
8
-
-
0027804103
-
Non-parametric multivariate analyses of changes in community structure
-
Clarke KR. (1993). Non-parametric multivariate analyses of changes in community structure. Austral Ecology 18: 117-143. (Pubitemid 24409223)
-
(1993)
Australian Journal of Ecology
, vol.18
, Issue.1
, pp. 117-143
-
-
Clarke, K.R.1
-
9
-
-
34248159346
-
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
-
DOI 10.1007/s00248-006-9134-9
-
DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL. (2007). High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environ-ment. Microb Ecol 53: 371-383. (Pubitemid 46716624)
-
(2007)
Microbial Ecology
, vol.53
, Issue.3
, pp. 371-383
-
-
DeSantis, T.Z.1
Brodie, E.L.2
Moberg, J.P.3
Zubieta, I.X.4
Piceno, Y.M.5
Andersen, G.L.6
-
10
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DOI 10.1128/AEM.03006-05
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K et al. (2006a). Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 72: 5069-5072. (Pubitemid 44078840)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.7
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
11
-
-
33747827586
-
NAST: A multiple sequence alignment server for comparative analysis of 16S rRNA genes
-
DOI 10.1093/nar/gkl244
-
DeSantis Jr TZ, Hugenholtz P, Keller K, Brodie EL, Larsen N, Piceno YM et al. (2006b). NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes. Nucleic Acids Res 34: W394-W399. (Pubitemid 44529801)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Keller, K.3
Brodie, E.L.4
Larsen, N.5
Piceno, Y.M.6
Phan, R.7
Andersen, G.L.8
-
12
-
-
56849106496
-
The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
-
Dethlefsen L, Huse S, Sogin ML, Relman DA. (2008). The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 6: e280.
-
(2008)
PLoS Biol
, vol.6
-
-
Dethlefsen, L.1
Huse, S.2
Sogin, M.L.3
Relman, D.A.4
-
13
-
-
20544444045
-
Microbiology: Diversity of the human intestinal microbial flora
-
DOI 10.1126/science.1110591
-
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M et al. (2005). Diversity of the human intestinal microbial flora. Science 308: 1635-1638. (Pubitemid 40807514)
-
(2005)
Science
, vol.308
, Issue.5728
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
Gill, S.R.7
Nelson, K.E.8
Relman, D.A.9
-
14
-
-
0035195887
-
Leptin regulation of the immune response and the immunodeficiency of malnutrition
-
DOI 10.1096/fj.01-0431rev
-
Faggioni R, Feingold KR, Grunfeld C. (2001). Leptin regulation of the immune response and the immuno-deficiency ofmalnutrition. Faseb J 15: 2565-2571. (Pubitemid 33131083)
-
(2001)
FASEB Journal
, vol.15
, Issue.14
, pp. 2565-2571
-
-
Faggioni, R.1
Feingold, K.R.2
Grunfeld, C.3
-
15
-
-
0037423837
-
Traces of human migrations in Helicobacter pylori populations
-
DOI 10.1126/science.1080857
-
Falush D, Wirth T, Linz B, Pritchard JK, Stephens M, Kidd M et al. (2003). Traces of human migrations in Helicobacter pylori populations. Science 299: 1582-1585. (Pubitemid 36297709)
-
(2003)
Science
, vol.299
, Issue.5612
, pp. 1582-1585
-
-
Falush, D.1
Wirth, T.2
Linz, B.3
Pritchard, J.K.4
Stephens, M.5
Kidd, M.6
Blaser, M.J.7
Graham, D.Y.8
Vacher, S.9
Perez-Perez, G.I.10
Yamaoka, Y.11
Megraud, F.12
Otto, K.13
Reichard, U.14
Katzowitsch, E.15
Wang, X.16
Achtman, M.17
Suerbaum, S.18
-
16
-
-
0029032318
-
Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species
-
Farrelly V, Rainey FA, Stackebrandt E. (1995). Effect of genome size and rrn gene copy number on PCR amplification of 16S rRNA genes from a mixture of bacterial species. Appl Environ Microbiol 61: 2798-2801.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 2798-2801
-
-
Farrelly, V.1
Rainey, F.A.2
Stackebrandt, E.3
-
17
-
-
35648968649
-
Indigenous shifting cultivation and the new Amazonia: A Piaroa example of economic articulation
-
DOI 10.1007/s10745-007-9120-y
-
Freire GN. (2007). Indigenous Shifting Cultivation and the New Amazonia: A Piaroa Example of Economic Articulation. Human Ecology 35: 681-696. (Pubitemid 350020251)
-
(2007)
Human Ecology
, vol.35
, Issue.6
, pp. 681-696
-
-
Freire, G.N.1
-
18
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
DOI 10.1126/science.1124234
-
Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS et al. (2006). Metagenomic analysis of the human distal gut microbiome. Science 312: 1355-1359. (Pubitemid 43839542)
-
(2006)
Science
, vol.312
, Issue.5778
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
DeBoy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
Samuel, B.S.6
Gordon, J.I.7
Relman, D.A.8
Fraser-Liggett, C.M.9
Nelson, K.E.10
-
19
-
-
0036181778
-
Exploring prokaryotic diversity in the genomic era
-
Hugenholtz P. (2002). Exploring prokaryotic diversity in the genomic era. Genome Biol 3: REVIEWS0003.
-
(2002)
Genome Biol
, vol.3
-
-
Hugenholtz, P.1
-
20
-
-
79953027658
-
-
http://vegan.r-forge.r-project.org/
-
Jari Oksanen RK, Pierre Legendre, Bob OHara, Simpson GL, Peter Solymos, M. Henry, H. Stevens, Helene Wagner. (2008). http://cran.r-project.org/, http://vegan.r-forge. r-project.org/.
-
(2008)
-
-
Jari Oksanen, R.K.1
Legendre, P.2
Ohara, B.3
Simpson, G.L.4
Solymos, P.5
Henry, M.6
Stevens, H.7
Helene, Wagner.8
-
21
-
-
58149218590
-
Pyrosequencing analysis of the oral microflora of healthy adults
-
Keijser BJ, Zaura E, Huse SM, van der Vossen JM, Schuren FH, Montijn RC et al. (2008). Pyrosequencing analysis of the oral microflora of healthy adults. J Dent Res 87: 1016-1020.
-
(2008)
J Dent Res
, vol.87
, pp. 1016-1020
-
-
Keijser, B.J.1
Zaura, E.2
Huse, S.M.3
Van Der Vossen, J.M.4
Schuren, F.H.5
Montijn, R.C.6
-
22
-
-
73349110099
-
Wrinkles in the rare biosphere: Pyrosequen-cing errors can lead to artificial inflation of diversity estimates
-
Kunin V, Engelbrektson A, Ochman H, Hugenholtz P. (2009). Wrinkles in the rare biosphere: pyrosequen-cing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12: 118-123.
-
(2009)
Environ Microbiol
, vol.12
, pp. 118-123
-
-
Kunin, V.1
Engelbrektson, A.2
Ochman, H.3
Hugenholtz, P.4
-
24
-
-
33847201150
-
An African origin for the intimate association between humans and Helicobac-terpylori
-
Linz B, Balloux F, Moodley Y, Manica A, Liu H, Roumagnac P et al. (2007). An African origin for the intimate association between humans and Helicobac-terpylori. Nature 445: 915-918.
-
(2007)
Nature
, vol.445
, pp. 915-918
-
-
Linz, B.1
Balloux, F.2
Moodley, Y.3
Manica, A.4
Liu, H.5
Roumagnac, P.6
-
25
-
-
0032999816
-
Comparison of five PCR methods for detection of Helicobacter pylori DNA in gastric tissues
-
Lu JJ, Perng CL, Shyu RY, Chen CH, Lou Q, Chong SK et al. (1999). Comparison of five PCR methods for detection of Helicobacter pylori DNA in gastric tissues. J Clin Microbiol 37: 772-774. (Pubitemid 29091302)
-
(1999)
Journal of Clinical Microbiology
, vol.37
, Issue.3
, pp. 772-774
-
-
Lu, J.-J..1
Perng, C.-L.2
Shyu, R.-Y.3
Chen, C.-H.4
Lou, Q.5
Chong, S.K.F.6
Lee, C.-H.7
-
26
-
-
0036843687
-
Escherichia coli gene expression responsive to levels of the response regulator EvgA
-
DOI 10.1128/JB.184.22.6225-6234.2002
-
Masuda N, Church GM. (2002). Escherichia coli gene expression responsive to levels of the response regulator EvgA. J Bacteriol 184: 6225-6234. (Pubitemid 35265904)
-
(2002)
Journal of Bacteriology
, vol.184
, Issue.22
, pp. 6225-6234
-
-
Masuda, N.1
Church, G.M.2
-
27
-
-
13544267706
-
Enhanced production of leptin in gastric fundic mucosa with Helicobacter pylori infection
-
Nishi Y, Isomoto H, Uotani S, Wen CY, Shikuwa S, Ohnita K et al. (2005). Enhanced production of leptin in gastric fundic mucosa with Helicobacter pylori infec-tion. World J Gastroenterol 11: 695-699. (Pubitemid 40220760)
-
(2005)
World Journal of Gastroenterology
, vol.11
, Issue.5
, pp. 695-699
-
-
Nishi, Y.1
Isomoto, H.2
Uotani, S.3
Wen, C.Y.4
Shikuwa, S.5
Ohnita, K.6
Mizuta, Y.7
Kawaguchi, A.8
Inoue, K.9
Kohno, S.10
-
28
-
-
40949148967
-
Long-term effects of Helicobacter pylori eradication on circulating ghrelin and leptin concentrations and body composition in prepubertal children
-
DOI 10.1530/EJE-07-0438
-
Pacifico L, Anania C, Osborn JF, Ferrara E, Schiavo E, Bonamico M et al. (2008). Long-term effects of Helicobacter pylori eradication on circulating ghrelin and leptin concentrations and body composition in prepubertal children. Eur J Endocrinol 158: 323-332. (Pubitemid 351404996)
-
(2008)
European Journal of Endocrinology
, vol.158
, Issue.3
, pp. 323-332
-
-
Pacifico, L.1
Anania, C.2
Osborn, J.F.3
Ferrara, E.4
Schiavo, E.5
Bonamico, M.6
Chiesa, C.7
-
29
-
-
77649316035
-
Infection with Helicobacter pylori is associated with protection against tuberculosis
-
Perry S, deJong BC, Solnick JV, Sanchez M, Yang S, Lin PL et al. (2010). Infection with Helicobacter pylori is associated with protection against tuberculosis. PLoS One 5: e8804.
-
(2010)
PLoS One
, vol.5
-
-
Perry, S.1
Dejong, B.C.2
Solnick, J.V.3
Sanchez, M.4
Yang, S.5
Lin, P.L.6
-
30
-
-
0029884002
-
Helicobacter pylori serology in patients with chronic gastritis
-
Plebani M, Basso D, Cassaro M, Brigato L, Scrigner M, Toma A et al. (1996). Helicobacter pylori serology in patients with chronic gastritis. Am J Gastroenterol 91: 954-958.
-
(1996)
Am J Gastroenterol
, vol.91
, pp. 954-958
-
-
Plebani, M.1
Basso, D.2
Cassaro, M.3
Brigato, L.4
Scrigner, M.5
Toma, A.6
-
32
-
-
0037087337
-
The Helicobacter pylori blood group antigen-binding adhesin facilitates bacterial colonization and augments a nonspecific immune response
-
Rad R, Gerhard M, Lang R, Schoniger M, Rosch T, Schepp W et al. (2002). The Helicobacter pylori blood group antigen-binding adhesin facilitates bacterial coloniza-tion and augments a nonspecific immune response. JImmunol 168: 3033-3041 (Pubitemid 34211685)
-
(2002)
Journal of Immunology
, vol.168
, Issue.6
, pp. 3033-3041
-
-
Rad, R.1
Gerhard, M.2
Lang, R.3
Schoniger, M.4
Rosch, T.5
Schepp, W.6
Becker, I.7
Wagner, H.8
Prinz, C.9
-
33
-
-
2642574503
-
-
Rproject. R. Development Core Team. R Foundation for Statistical Computing, 1090 Vienna, Austria. URL
-
Rproject. (2008). A language and environment for statis-tical computing. R. Development Core Team. R Foundation for Statistical Computing, 1090 Vienna, Austria. URL http://www.R-project.org.
-
(2008)
A Language and Environment for Statistical Computing
-
-
-
34
-
-
0030851665
-
Intestinal microflora of Estonian and Swedish infants
-
Sepp E, Julge K, Vasar M, Naaber P, Bjorksten B, Mikelsaar M. (1997). Intestinal microflora of Estonian and Swedish infants. Acta Paediatr 86: 956-961. (Pubitemid 27425591)
-
(1997)
Acta Paediatrica, International Journal of Paediatrics
, vol.86
, Issue.9
, pp. 956-961
-
-
Sepp, E.1
Julge, K.2
Vasar, M.3
Naaber, P.4
Bjorksten, B.5
Mikelsaar, M.6
-
35
-
-
0030067991
-
Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
-
Suzuki MT, Giovannoni SJ. (1996). Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62: 625-630. (Pubitemid 26047427)
-
(1996)
Applied and Environmental Microbiology
, vol.62
, Issue.2
, pp. 625-630
-
-
Suzuki, M.T.1
Giovannoni, S.J.2
-
36
-
-
9844229885
-
Induction of various cytokines and development of severe mucosal inflammation by cagA gene positive Helicobacter pylori strains
-
Yamaoka Y, Kita M, Kodama T, Sawai N, Kashima K, Imanishi J. (1997). Induction of various cytokines and development of severe mucosal inflammation by cagA gene positive Helicobacter pylori strains. Gut 41: 442-451.
-
(1997)
Gut
, vol.41
, pp. 442-451
-
-
Yamaoka, Y.1
Kita, M.2
Kodama, T.3
Sawai, N.4
Kashima, K.5
Imanishi, J.6
-
37
-
-
34249945020
-
Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women
-
DOI 10.1038/ismej.2007.12, PII ISMEJ200712
-
Zhou X, Brown CJ, Abdo Z, Davis CC, Hansmann MA, Joyce P et al. (2007). Differences in the composition of vaginal microbial communities found in healthy Caucasian and black women. ISMEJ1: 121-133. (Pubitemid 46878155)
-
(2007)
ISME Journal
, vol.1
, Issue.2
, pp. 121-133
-
-
Zhou, X.1
Brown, C.J.2
Abdo, Z.3
Davis, C.C.4
Hansmann, M.A.5
Joyce, P.6
Foster, J.A.7
Forney, L.J.8
|