Genetic variability of introduced and local Spanish peach cultivars determined by SSR markers

Tree Genetics and Genomes

Volumn 7, Issue 2, 2011, Pages 257-270

  Bouhadida, Mariem ^a,b   Moreno, María Ángeles ^a   Gonzalo, María José ^a   Alonso, J Manuel ^c   Gogorcena, Yolanda ^a  

^a CSIC   (Spain)

^b UNIVERSITY OF CARTHAGE   (Tunisia)

^c Agrifood Institute of Aragón IA2   (Spain)

Author keywords

Genetic diversity; Spanish native peach; SSR markers

Indexed keywords

PRUNUS PERSICA;

EID: 79952991494     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-010-0329-3     Document Type: Article

References (45)

1. Abbassi EK (2007) Variabilidad y genética de asociación en melocotonero. Master dissertation, CIHEAM, Spain.
2. Aranzana MJ, García-Mas J, Carbó J, Arús P (2002) Development and variability analysis of microsatellite markers in peach. Plant Breed 121: 87-92.
3. Aranzana MJ, Carbó J, Arús P (2003a) Microsatellite variability in peach [Prunus persica (L.) Batsch]: cultivar identification, marker mutation, pedigree inferences and population structure. Theor Appl Genet 106: 1341-1352.
4. Aranzana M, Pineda A, Cosson P, Dirlewanger E, Ascasibar J, Cipriani G, Ryder CD, Testolin R, Abbott A, King GJ, Iezzoni AF, Arús P (2003b) A set of simple-sequence repeat (SSR) markers covering the Prunus genome. Theor Appl Genet 106: 819-825.
5. Badenes ML, Werner DJ, Martínez-Calvo J, Llácer G (1998) A description of peach native populations from Spain. Fruit Var J 52: 80-86.
6. Bassam BJ, Caetano-Anoelles G, Gresshoff PM (1983) Fast and sensitive silver staining of DNA in polyacrylamide gels. Ann Biochem 196: 80-83.
7. Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314-331.
8. Bouhadida M, Casas AM, Moreno MA, Gogorcena Y (2007) Molecular characterization of Miraflores peach variety and relatives using SSRs. Sci Hortic 111: 140-145.
9. Bouhadida M, Casas AM, Gonzalo MJ, Arús P, Moreno MA, Gogorcena Y (2009) Molecular characterization and genetic diversity of Prunus rootstocks. Sci Hortic 120: 237-245.
10. Cambra M (1979) Selección de variedades españolas de melocotonero de carne amarilla dura. ITEA 37: 18-26.
11. Cheng Z, Huang H (2009) SSR fingerprinting Chinese peach cultivars and landraces (Prunus persica) and analysis of their genetic relationships. Sci Hortic 120: 188-193.
12. Cheng FS, Brown SK, Weeden NF (1997) A DNA extraction protocol from various tissues in woody species. Hortic Sci 32: 921-922.
13. Decroocq V, Hagen LS, Favé MG, Eyquard JP, Pierronnet A (2004) Microsatellite markers in the hexaploid Prunus domestica species and parentage lineage of three European plum cultivars using nuclear and chloroplast simple-sequence repeats. Mol Breed 13: 135-142.
14. Dirlewanger E, Cosson P, Tavaud M, Aranzana MJ, Poizat C, Zanetto A, Arús P, Laigret F (2002) Development of microsatellite markers in peach [Prunus persica (L.) Batsch] and their use in genetic diversity analysis in peach and sweet cherry (Prunus avium L.). Theor Appl Genet 105: 127-138.
15. Downey SL, Iezzoni AF (2000) Polymorphic DNA markers in black cherry (Prunus serotina) are identified using sequences from sweet cherry, peach and sour cherry. J Am Soc Hortic Sci 125: 76-80.
16. Excoffier L, Smouse P, Quattro J (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131: 479-491.
17. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3. 0: an integrated software package for population genetics data analysis. Evol Bioinformat Online 1: 47-50.
18. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evol 39: 783-791.
19. Fogle HW (1977) Self-pollination and its implication in peach improvement. Fruit Var J 31: 74-75.
20. Gašíc K, Ognjanov V, BoŠkovíc R, Tobutt KR (2000) Isoenzyme polymorphism in peach cultivars. Acta Hortic 538: 517-523.
21. Gepts P (1995) Genetic markers and core collections. In: International Plant Genetic Resources Institute (IPGRI) (ed) Core collections of plant genetic resources., pp 127-146.
22. Gogorcena Y, Parfitt DE (1994) Evaluation of RAPD marker consistency for detection of polymorphism in apricot. Sci Hortic 59: 163-167.
23. Hartl DL, Clark AG (1997) Principles of population genetics, 2nd edn. Sinauer, Sunderland.
24. Hurtado MA, Badenes ML, Llácer G, Westman A, Beck E, Abbott GA (2001) Contribution to apricot genetic analysis with RFLP, RAPD and AFLP markers. Acta Hortic 546: 417-420.
25. Joobeur T, Periam N, De Vicente MC, King GJ, Arús P (2000) Development of a second generation linkage map for almond using RAPD and SSR markers. Genome 43: 649-655.
26. Kloosterman AD, Budowle B, Daselaar P (1993) PCR-amplification and detection of the human DIS80 VNTR locus. Amplification conditions, population genetics and application in forensic analysis. Int J Leg Med 105: 257-264.
27. Krichen L, Mnejja M, Arús P, Marrakchi M, Trifi-Farah N (2006) Use of microsatellite polymorphisms to develop an identification key for Tunisian apricots. Genet Resour Crop Evol 53: 1699-1706.
28. Li T-H, Li Y-X, Li Z-C, Zhang H-L, Qi Y-W, Wang T (2008) Simple sequence repeat analysis of genetic diversity in primary core collection of peach (Prunus persica). J Integr Plant Biol 50: 102-110.
29. Llácer G, Alonso M, Rubio MJ, Batlle I, Iglesias I, Vargas FJ, García-Brunton J, Badenes ML (2009a) Situación del material vegetal del melocotonero utilizado en España. ITEA 105: 67-83.
30. Llácer G, Alonso JM, Rubio-Cabetas MJ, Battle I, Iglesias I, Vargas FJ, García-Brunton J, Badenes ML (2009b) Peach industry in Spain. J Am Pomol Soc 63: 128-133.
31. Maghuly F, Fernández EB, Ruthner S, Pedryc A, Laimer M (2005) Microsatellite variability in apricots (Prunus armeniaca L.) reflects their geographic origin and breeding history. Tree Genet Genomes 1: 151-165.
32. Martínez-Mora C, Rodríguez Navarro J, De la Rúa P, Ruiz García L, Cenis JL (2008) Caracterización molecular de germoplasma de melocotonero autóctono español mediante marcadores microsátelite. Acta Hortic 51: 117-118.
33. Messeguer R, Arús P, Carrera M (1987) Identification of peach cultivars with pollen isozymes. Sci Hortic 31: 107-117.
34. Murray BW (1996) The estimation of genetic distance and population substructure from microsatellite allele frequency data. Course notes. Department of Biology, Mc Master University, Hamilton, Ont. http://helix. biology. mcmaster. ca/brent/brent. html.
35. Okie WR (1998) Handbook of peach and nectarine varieties: performance in the Southeastern United States and index of names. USDA Agriculture Handbook No. 714.
36. Quarta R, Dettori MT, Verde I, Marchesi U, Palombi MA, Doré C, Dosba F, Baril C (2001) Characterization and evaluation of genetic diversity in peach germplasm using RAPD and RFLP markers. Acta Hortic 546: 489-496.
37. Rogers JS (1972) Measures of genetic similarity and genetic distance. Studies in genetics VII. Univ Tex Publ 7213: 145-153.
38. Rohlf FJ (2000) NTSYS-pc Numerical taxonomy and multivariate analysis system. Version 2. 1. Exeter software, Setauket, NY.
39. Scorza R, Mehlenbacher SA, Lightner GW (1985) Inbreeding and coancestry of freestone peach cultivars of the Eastern United States and implications for peach germplasm improvement. J Am Soc Hortic Sci 110: 547-552.
40. Sosinski B, Gannavarapu M, Hager LD, Beck LE, King GJ, Ryder CD, Rajapakse S, Baird WV, Ballard RE, Abbot AG (2000) Characterization of microsatellite in peach [Prunus persica (L.) Batsch]. Theor Appl Genet 97: 1034-1041.
41. Swofford DL (2002) PAUP*: phylogenetic analysis using parsimony (*and other methods), version 4. 0. Sinauer Associates, Sunderland.
42. Testolin R, Marrazo T, Cipriani G, Quarta R, Verde I, Dettori MT, Pancaldi M, Sansavini S (2000) Microsatellite DNA in peach (Prunus persica L. Batsch) and its use in fingerprinting and testing the genetic origin of cultivars. Genome 43: 512-520.
43. Wright S (1965) The interpretation of population structure by F-statistics with special regard to systems of mating. Evolution 19: 395-420.
44. Wünsch A, Carrera M, Hormaza JI (2006) Molecular characterization of local Spanish peach [Prunus persica (L.) Batsch] germplasm. Genet Resour Crop Evol 53: 925-932.
45. Zehdi S, Trifi M, Billotte N, Marrakchi M, Pintaud JC (2004) Genetic diversity of Tunisian date palm (Phoenix dactylifera L.) revealed by nuclear microsatellite polymorphism. Hereditas 141: 278-287.