Genetic diversity of Tunisian date palms (Phoenix dactylifera L.) revealed by nuclear microsatellite polymorphism

Hereditas

Volumn 141, Issue 3, 2004, Pages 278-287

  Zehdi, Salwa ^a   Trifi, Mokhtar ^a   Billotte, Norbert ^b   Marrakchi, Mohamed ^a   Pintaud, Jean Christophe ^c  

^a FACULTÉ DES SCIENCES DE TUNIS   (Tunisia)

^b CIRAD   (France)

^c INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA; MOLECULAR MARKER;

ARTICLE; CONTROLLED STUDY; FRUIT; GENE LOCUS; GENE TARGETING; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHY; GERMPLASM; NONHUMAN; SIMPLE SEQUENCE REPEAT; TUNISIA;

ARECACEAE; DNA, PLANT; GENE FREQUENCY; GENOTYPE; MICROSATELLITE REPEATS; POLYMORPHISM, GENETIC; SEQUENCE ANALYSIS, DNA; TUNISIA;

PHOENIX DACTYLIFERA;

EID: 14944385177     PISSN: 00180661     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1601-5223.2004.01855.x     Document Type: Article

References (46)

1. Belkhir, K., Goudet, J., Chikhi, L. et al. 2000. Genetix (Ver. 4.01), logiciel sous windowsTM pour la génétique des populations. Laboratoire Génome et Population, Université Montpellier II, Montpellier, France.
2. Ben Abdallah, A., Stiti, K., Lepoivre, P. et al. 2000. Identification de cultivars de palmier dattier (Phoenix dactylifera L.) par l'amplification aléatoire d'ADN (RAPD). - Cahiers Agric. 9: 103-107.
3. Bennaceur, M., Lanaud, C., Chevalier, M. H. et al. 1991. Genetic diversity of the date palm (Phoenix dactylifera L.) from Algeria revealed by enzyme markers. - Plant Breed. 107: 56-69.
4. Billotte, N., Marseillac, N., Brottier, P. et al. 2004. Nuclear microsatellite markers for the date palm (Phoenix dactylifera L.): characterization, utility across the genus Phoenix and in other palm genera. - Mol. Ecol. Notes. 4: 256-258.
5. Booij, L., Montfort, S. and Ferry, M. 1995. Characterization of thirteen date palm (Phoenix dactylifera L.) cultivars by enzyme electrophoresis using the Phast-System. - J. Plant Physiol. 145: 62-66.
6. Bouabidi, H., Reynes, M. and Rouissi, M. B. 1996. Critères de caractérisation des fruits de quelques cultivars de palmier dattier (Phoenix dactylifera L.) du sud tunisien. - Ann. Inst. Rech. Agric. Tunisie 69: 73-87.
7. Bruford, M. W. and Wayne, R. K. 1993. Microsatellites and their application to population genetic studies. - Curr. Opin. Genet. Dev. 3: 939-943.
8. Chakraborty, R. and Jin, L. 1993. A unified approche to study hypervariable polymorphisms: statistical considerations of determining relatedness and population distances. - In: Chakraborty, R., Epplen, J. T. and Jeffreys, A. J. (eds), DNA fingerprinting: state of the science. Birkhäuser Verlag, p. 153-175.
9. Condit, R. and Hubbell, S. P. 1991. Abundance and DNA sequence of two-base repeat regions in tropical tree genomes. - Genome 34: 66-71.
10. Cornicquel, B. and Mercier, L. 1994. Date-palm (Phoenix dactylifera L.) cultivar identification by RFLP & RAPD. - Plant Sci. 101: 163-172.
11. Cornicquel, B. and Mercier, L. 1996. Identification of date-palm (Phoenix dactylifera L.) cultivars by RFLP: partial characterization of a cDNA probe that contains a sequence encoding a zinc finger motif. - Int. J. Plant Sci. 158: 152-156.
12. Dieringer, D. and Schlöterer, C. 2003. Microsatellite analyser (MSA): a platform independent analysis tool for large microsatellite data sets. - Mol. Ecol. Notes 2: 1-3.
13. Fakir, S. 1992. Contribution à l'étude des ressources phylogénétiques chez le palmier dattier. Analyse du polymorphisme enzymatique et protéique. - PhD thesis, l'Université Paris VI, France.
14. Felsenstein, J. 1995. PHYLIP (Phylogeny Interference Package), version 3.5c. Distributed by the author, Dept of Genetics, Univ. of Washington, Seattle, Washington, USA.
15. Goldstein, D. B. and Pollock, D. D. 1997. Launching microsatellites: a review of mutation processes and methods of phylogenetic inference. - J. Heredity 88: 335-342.
16. Goudet, J. 1995. Fstat version 1.2. A computer program to calculate F-statistics. - J. Heredity 86: 485-486.
17. Innan, H, Terauchi, R. and Miyashita, N. T. 1997. Microsatellite polymorphism in natural populations of the wild plant Arabidopsis thaliana. - Genetics 146: 1441-1452.
18. Kresovich, S., Szewc-McFadden, A. K., Bliek, S. M. et al. 1995. Abundance and characterization of simple-sequence repeats (SSRs) isolated from a size-fractionated genomic library of Brassica napus L. (rapeseed). - Theor. Appl. Genet. 91: 206-211.
19. Langella, O. (2002). Populations 1. 2. 28 Software. CNRS. UPR9034. France.
20. Liu, ZW., Biyashcv, R. M. and Saghai-Maroof, M. A. 1996. Development of simple sequence repeat DNA markers and their integration into a barley linkage map. - Theor. Appl. Genet. 93: 869-876.
21. MacHugh, D. E., Shriver, M. D., Loftus, R. T. et al. 1997. Microsatellite DNA variation and the evolution, domestication and phylogeography of taurine and zebu cattle (Bos taurus and Bos indicus). - Genetics 146: 1071-1086.
22. Mitchell, S. E., Kresovich, S., Jester, C. A. et al. 1997. Application of multiplex PCR and fluorescence- based, semi-automated allele sizing technology for genotyping plant genetics resources. - Crop Sci. 37: 617-624.
23. Nei, M. 1987. Molecular evolutionary genetics. - Columbia Univ. Press.
24. Ouazzani., N., Lumaret, R. and Villemar, P. 1995. Apport du polymorphisme alloenzymatique à l'identification variétale de l'olivier (Oleae europeae L.). - Agronomie. 15: 31-37.
25. Ould Mohamed Salem, A., Trifi, M., Rhouma, A. et al. 2001. Genetic inheritance analysis of four enzymatic systems in date-palm ( Phoenix dactylifera L.). - Genet. Resour. Crop Evol. 48: 361-368.
26. Raymond, M. and Rousset, F. 1995. GENEPOP (ver1.2): A population genetics software for exact test and ecumenicism. - J. Heredity 86: 248-249.
27. Reynes, M., Bouabidi, H., Piombi, G. et al. 1994. Caracterisation des principales variétés des dates cultivées dans la région de Tozeur. - Fruits 49: 289-298.
28. Rhouma, A. 1994. Le palmier dattier en Tunisie. I: le patrimoine génétique. - Arabesque, Tunis, Tunisie.
29. Röder, M. S., Plaschke, J., König, S. U. et al. 1995. Abundance, variability and chromosomal location of microsatellites in wheat. - Mol. Gen. Genet. 246: 327-333.
30. Röder, M. S., Korzun, V., Wendehake, K. et al. 1998. A microsatellite map of wheat. - Genetics 149: 2007-2023.
31. Rousset, F. and Raymond, M. 1995. Testing heterozygote excess and deficiency. - Genetics 140: 1413-1419.
32. Sakka, H. 2003. Analyse de la diversité génétique chez le palmier dattier (Phoenix dactylifera L.): Polymorphisme de l'ADN chloroplastique. - PhD thesis, Université Tunis-El Manar, Fac. Sc. Tunis, Tunisie.
33. Sakka, H., Zehdi, S., Ould Mohamed Salem, A. et al. 2004. Genetic polymorphism of plastid DNA in Tunisian date palm germplasm ( Phoenix dactylifera L.) detected with PCR-RFLR. - Genet. Resour. Crop Evol. 51: 479-487.
34. Salhi-Hannachi, A., Chatti, K., Mars, M. et al. 2004. Comparative analysis of genetic diversity in two Tunisian collections of fig cultivars based on random amplified polymorphic DNA and inter simple sequence repeats fingerprints. - Genet. Resour. Crop Evol. 8: in press.
35. Sambrook, J., Fritsch, E. F. and Maniatis, T. 1989. Molecular cloning: a laboratory manual. - Cold Spring Harbor Laboratory Press.
36. Schug, M. D., Hutter, C. M., Wetterstrand, K. A. et al. 1998. The mutation rates of di-, tri- and tetra-nucleotide repeats in Drosophila melanogaster. - Mol. Biol. Evol. 15: 1751-1760.
37. Sedra, My., Lashermes, H. P., Trouslot, P. et al. 1998. Identification and genetic diversity analysis of date-palm (Phoenix dactylifera L.) varieties from Morocco using RAPD markers. - Euphytica 103: 75-82.
38. Senior, M. L. and Heun, M. 1998. Mapping maize microsatellites and polymerase chain reaction confirmation of the targeted repeats using a CT primer. - Genome 36: 884-889.
39. Taramino, G. and Tingey, S. 1996. Simple sequence repeats for germplasm analysis and mapping in maize. - Genome 39: 277-287.
40. Tautz, D. and Renz, M. 1984. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. - Nucleic Acids Res. 12: 4127-4138.
41. Torres, A. M. and Tisserat, B. 1980. Leaf isozymes as genetic markers in date palms. - Am. J. Bot. 67: 162-167.
42. Trifi, M. 2001. Polymorphisme et typage moléculaire de variétés tunisiennes de palmier dattier (Phoenix dactylifera L.): relation avec la résistance au bayoud. - PhD thesis, d'Etat, Université Tunis-El Manar, Fac. Sc. Tunis, Tunisie.
43. Trifi, M., Rhouma, A. and Marrakchi, M. 2000. Phylogenetic relationships in Tunisian date-palm (Phoenix dactylifera L.) germplasm collection using DNA amplification fingerprinting. - Agronomie 20: 665-671.
44. Weir, B. S. and Cockerham, C. 1984. Estimating F-statistics for the analysis of population structure. - Evolution 38: 1358-1370.
45. Wrigley, G. 1995. Date-palm (Phoenix dactylifera L.). - In: Smartt, J. and Simmonds, N. W. (eds), The evolution of crop plants. Longman, UK, p. 399-403.
46. Zehdi, S., Trifi, M., Ould Mohamed Salem, A. et al. 2002. Survey of inter simple sequence repeat polymorphisms in Tunisian date palms (Phoenix dactylifera L.). - J. Genet. Breed. 56: 77-83.