A nonsense mutation in a putative sulphate transporter gene results in low phytic acid in barley

Functional and Integrative Genomics

Volumn 11, Issue 1, 2011, Pages 103-110

  Ye, Hongxia ^a,b,d   Zhang, Xiao Qi ^c   Broughton, Sue ^b   Westcott, Sharon ^b   Wu, Dianxing ^a   Lance, Reg ^b   Li, Chengdao ^b,c  

^a ZHEJIANG UNIVERSITY   (China)

^b DEPARTMENT OF HEALTH   (Australia)

^c MURDOCH UNIVERSITY   (Australia)

^d Huzhou Academy of Agricultural Sciences   (China)

Author keywords

Barley; Candidate gene; Comparative mapping; HvST; Rice

Indexed keywords

ANION TRANSPORT PROTEIN; HVST PROTEIN; PHYTIC ACID; UNCLASSIFIED DRUG;

AMINO ACID SUBSTITUTION; ARTICLE; BARLEY; BASE PAIRING; CHROMOSOME 4; CHROMOSOME MAP; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; GENE IDENTIFICATION; GENE LOCATION; GENE LOCUS; GENOME ANALYSIS; NONHUMAN; NONSENSE MUTATION; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RICE; SEQUENCE ANALYSIS;

ANION TRANSPORT PROTEINS; BASE SEQUENCE; CHROMOSOME MAPPING; CLONING, MOLECULAR; CODON, NONSENSE; DNA, PLANT; GENOME, PLANT; HORDEUM; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PHYTIC ACID; PLANT PROTEINS; POLYMERASE CHAIN REACTION; RNA, PLANT; SEQUENCE HOMOLOGY, NUCLEIC ACID; SULFATES;

HORDEUM;

EID: 79952988934     PISSN: 1438793X     EISSN: 14387948     Source Type: Journal    
DOI: 10.1007/s10142-011-0209-4     Document Type: Article

References (40)

1. R Appels M Francki R Chibbar 2003 Advances in cereal functional genomics Funct Integr Genomics 3 1 24 10.1007/s10142-002-0073-3 12590339 1:CAS:528:DC%2BD3sXht1CktL8%3D (Pubitemid 41449140)
2. K Arumuganathan ED Earle 1991 Nuclear DNA content of some important plant species Plant Mol Biol Rep 9 208 218 10.1007/BF02672069 10.1007/BF02672069 1:CAS:528:DyaK38XhslSjurY%3D
3. B Campion F Sparvoli E Doria G Tagliabue I Galasso M Fileppi R Bollini E Nielsen 2009 Isolation and characterisation of an lpa (low phytic acid) mutant in common bean (Phaseolus vulgaris L.) Theor Appl Genet 118 1211 1221 DOI10.1007/s00122-009-0975-8 19224193 10.1007/s00122-009-0975-8 1:CAS:528:DC%2BD1MXktFekt7g%3D
4. JA Dorsch A Cook KA Young JM Anderson AT Bauman CJ Volkmann PPN Murthy V Raboy 2003 Seed phosphorus and inositol phosphate phenotype of barley low phytic acid genotypes Phytochemistry 62 691 706 12620321 10.1016/S0031-9422(02)00610-6 1:CAS:528:DC%2BD3sXhs1KisLg%3D (Pubitemid 36227764)
5. JD Gillman VR Pantalone K Bilyeu 2009 The low phytic acid phenotype in soybean line CX1834 is due to mutations in two homologs of the maize low phytic acid gene Plant Genome 2 179 190 10.3835/plantgenome2008.03.0013 1:CAS:528:DC%2BD1MXosFWgu7o%3D
6. M Guttieri D Bowen JA Dorsch V Raboy E Souza 2003 Identification and characterization of a low phytic acid wheat Crop Sci 44 418 424 10.2135/cropsci2004.0418
7. MJ Hawkesford 2003 Transporter gene families in plants: the sulphate transporter gene family-redundancy or specialization? Physiol Plant 117 155 163 10.1034/j.1399-3054.2003.00034.x 1:CAS:528:DC%2BD3sXitlKrsLk%3D (Pubitemid 36610334)
8. WD Hitz TJ Carlson PS Kerr SA Sebastian 2002 Biochemical and molecular characterization of a mutation that confers a decreased raffinosaccharide and phytic acid phenotype on soybean seeds Plant Physiol 128 650 660 10.1104/Pp.010585 11842168 10.1104/pp.010585 1:CAS:528:DC%2BD38XhsVSqsrc%3D (Pubitemid 34190879)
9. QJ Jia JJ Zhang S Westcott XQ Zhang M Bellgard R Lance CD Li 2009 GA-20 oxidase as a candidate for the semidwarf gene sdw1/denso in barley Funct Integr Genomics 9 255 262 10.1007/s10142-009-0120-4 19280236 10.1007/s10142-009-0120-4 1:CAS:528:DC%2BD1MXjsFyku7g%3D
10. A Karakousis AR Barr JM Kretschmer S Manning SP Jefferies KJ Chalmers AKMR Islam P Langridge 2003 Mapping and QTL analysis of the barley population Clipper x Sahara Aust J Agric Res 54 1137 1140 10.1071/AR02180 1:CAS:528:DC%2BD3sXpvV2mtLs%3D (Pubitemid 38106399)
11. SI Kim CB Andaya SS Goyal TH Tai 2008 The rice OsLpa1 gene encodes a novel protein involved in phytic acid metabolism Theor Appl Genet 117 769 779 10.1007/s00122-008-0818-z 18566795 10.1007/s00122-008-0818-z 1:CAS:528:DC%2BD1cXhtVSnsrjL
12. SI Kim CB Andaya JW Newman SS Goyal TH Tai 2008 Isolation and characterization of a low phytic acid rice mutant reveals a mutation in the rice orthologue of maize MIK Theor Appl Genet 117 1291 1301 DOI10.1007/s00122-008- 0863-7 18726583 10.1007/s00122-008-0863-7 1:CAS:528:DC%2BD1cXhtlSgsLnJ
13. V Kuraparthy S Sood BS Gill 2008 Genomic targeting and mapping of tiller inhibition gene (tin3) of wheat using ESTs and synteny with rice Funct Integr Genomics 8 33 42 10.1007/s10142-007-0057-4 17891549 10.1007/s10142-007-0057-4 1:CAS:528:DC%2BD2sXhsVGhurrM
14. SR Larson KA Young A Cook TK Blake V Raboy 1998 Linkage mapping of two mutations that reduce phytic acid content of barley grain Theor Appl Genet 97 141 146 10.1007/s001220050878 1:CAS:528:DyaK1cXlslaju7Y%3D (Pubitemid 28371676)
15. SR Larson JN Rutger KA Young V Raboy 2000 Isolation and genetic mapping of a non-lethal rice (Oryza sativa L.) low phytic acid 1 mutation Crop Sci 40 1397 1405 10.2135/cropsci2000.4051397x 1:CAS:528:DC%2BD3cXns1Gqtrg%3D
16. CD Li PX Ni M Francki A Hunter Y Zhang D Schibeci H Li A Tarr J Wang M Cakir J Yu M Bellgard R Lance R Appels 2004 Genes controlling seed dormancy and pre-harvest sprouting in a rice-wheat-barley comparison Funct Integr Genomics 4 84 93 10.1007/s10142-004-0104-3 14770301 10.1007/s10142-004-0104-3 1:CAS:528:DC%2BD2cXksVShtbw%3D (Pubitemid 41166580)
17. QL Liu XH Xu XL Ren HW Fu DX Wu QY Shu 2007 Generation and characterization of low phytic acid germplasm in rice (Oryza sativa L.) Theor Appl Genet 114 803 814 10.1007/s00122-006-0478-9 17219209 10.1007/s00122-006- 0478-9 1:CAS:528:DC%2BD2sXitVOltr8%3D (Pubitemid 46339687)
18. Manly KF (1993) A Macintosh program for storage and analysis of experimental genetic mapping data. Mamm. Genome 4:303-313
19. RE Oliver C Yang G Hu V Raboy M Zhang 2009 Identification of PCR-based DNA markers flanking three low phytic acid mutant loci in barley J. Plant Breed. Crop Sci. 1 087 093 1:CAS:528:DC%2BD1MXhsVGqu7%2FP
20. R Pilu D Panzeri G Gavazzi SK Rasmussen G Consonni E Nielsen 2003 Phenotypic, genetic and molecular characterization of a maize low phytic acid mutant (lpa241) Theor Appl Genet 107 980 987 10.1007/s00122-003-1316-y 14523526 10.1007/s00122-003-1316-y 1:CAS:528:DC%2BD3sXnvVCgtb8%3D (Pubitemid 37261726)
21. Raboy A (1997) Accumulation and storage of phosphate and minerals. In: Larkins BA, Vasil IK (eds) Cellular and molecular biology of plant seed development. Kluwer Academic, Dordrecht, pp 441-477
22. V Raboy 2001 Seeds for a better future: 'low phytate', grains help to overcome malnutrition and reduce pollution Trends Plant Sci 6 458 462 11590064 10.1016/S1360-1385(01)02104-5 1:CAS:528:DC%2BD3MXnvVensrw%3D (Pubitemid 33145953)
23. V Raboy PF Gerbasi KA Young SD Stoneberg SG Pickett AT Bauman PPN Murthy WF Sheridan DS Ertl 2000 Origin and seed phenotype of maize low phytic acid 1-1 and low phytic acid 2-1 Plant Physiol 124 355 368 10982449 10.1104/pp.124.1.355 1:CAS:528:DC%2BD3cXmvVGhtb4%3D
24. V Raboy KA Young JA Dorsch A Cook 2001 Genetics and breeding of seed phosphorus and phytic acid J Plant Physiol 158 489 497 10.1078/0176-1617-00361 1:CAS:528:DC%2BD3MXjs1yjtb4%3D (Pubitemid 32378900)
25. XL Ren QL Liu HW Fu DX Wu QY Shu 2007 Density alteration of nutrient elements in rice grains of a low phytate mutant Food Chem 102 1400 1406 10.1016/j.foodchem.2006.05.065 10.1016/j.foodchem.2006.05.065 1:CAS:528:DC%2BD2sXht1Gktbw%3D (Pubitemid 46176464)
26. V Roslinsky PE Eckstein V Raboy BG Rossnagel GJ Scoles 2007 Molecular marker development and linkage analysis in three low phytic acid barley (Hordeum vulgare) mutant lines Mol Breed 20 323 330 10.1007/s11032-007-9094-x 10.1007/s11032-007-9094-x 1:CAS:528:DC%2BD2sXhtV2msb7J (Pubitemid 47497966)
27. L Rossini A Vecchietti L Nicoloso N Stein S Franzago F Salamini C Pozzi 2006 Candidate genes for barley mutants involved in plant architecture: an in silico approach Theor Appl Genet 112 1073 1085 10.1007/s00122-006-0209-2 16501940 10.1007/s00122-006-0209-2 1:CAS:528:DC%2BD28XjtVSmtbs%3D
28. JR Shi HY Wang YS Wu J Hazebroek RB Meeley DS Ertl 2003 The maize low-phytic acid mutant 1pa2 is caused by mutation in an inositol phosphate kinase gene Plant Physiol 131 507 515 10.1104/Pp.014258 12586875 10.1104/pp.014258 1:CAS:528:DC%2BD3sXhtlOqu7k%3D (Pubitemid 36219513)
29. JR Shi HY Wang J Hazebroek DS Ertl T Harp 2005 The maize low-phytic acid 3 encodes a myo-inositol kinase that plays a role in phytic acid biosynthesis in developing seeds Plant J 42 708 719 10.1111/j.1365-313X.2005.02412.x 15918884 10.1111/j.1365-313X.2005.02412.x 1:CAS:528:DC%2BD2MXlt1yns70%3D (Pubitemid 40809888)
30. JR Shi HY Wang K Schellin BL Li M Faller JM Stoop RB Meeley DS Ertl JP Ranch K Glassman 2007 Embryo-specific silencing of a transporter reduces phytic acid content of maize and soybean seeds Nat Biotechnol 25 930 937 10.1038/Nbt1322 17676037 10.1038/nbt1322 1:CAS:528:DC%2BD2sXos12ntLg%3D (Pubitemid 47236915)
31. J Stevenson-Paulik RJ Bastidas ST Chiou RA Frye JD York 2005 Generation of phytate-free seeds in Arabidopsis through disruption of inositol polyphosphate kinases Proc Natl Acad Sci USA 102 12612 12617 10.1073/pnas.0504172102 16107538 10.1073/pnas.0504172102 1:CAS:528: DC%2BD2MXhtVSjsrjJ (Pubitemid 41266407)
32. M Suzuki K Tanaka M Kuwano, et al. 2007 Expression pattern of inositol phosphate-related enzymes in rice (Oryza sartiva L.): implications for the phytic acid biosynthetic pathway Gene 405 55 64 10.1016/j.gene.2007.09.006 17961936 10.1016/j.gene.2007.09.006 1:CAS:528:DC%2BD2sXht1GitLnM (Pubitemid 350016663)
33. BJ Till J Cooper TH Tai P Colowit EA Greene S Henikoff L Comai 2007 Discovery of chemically induced mutations in rice by TILLING BMC Plant Biol 7 19 17428339 10.1186/1471-2229-7-19 (Pubitemid 46674120)
34. JJ Vidmar JK Schjoerring B Touraine ADM Glass 1999 Regulation of the hvst1 gene encoding a high-affinity sulfate transporter from Hordeum vulgare Plant Mol Biol 40 883 892 10487222 10.1023/A:1006230131841 1:CAS:528: DyaK1MXmtFeku70%3D (Pubitemid 29412000)
35. JR Wilcox GS Premachandra KA Young V Raboy 2000 Isolation of high seed inorganic P, low-phytate soybean mutants Crop Sci 40 1601 1605 10.2135/cropsci2000.4061601x (Pubitemid 32062584)
36. XH Xu HJ Zhao QL Liu T Frank KH Engel GH An QY Shu 2009 Mutations of the multi-drug resistance-associated protein ABC transporter gene 5 result in reduction of phytic acid in rice seeds Theor Appl Genet 119 75 83 10.1007/s00122-009-1018-1 19370321 10.1007/s00122-009-1018-1 1:CAS:528:DC%2BD1MXmslOktL4%3D
37. XQ Yang S Westcott X Gong E Evans XQ Zhang R Lance CD Li 2009 Alleles of limit dextrinase gene associated with the enzyme thermostability in barley Mol Breed 23 61 74 10.1007/s11032-008-9214-2 1:CAS:528:DC%2BD1cXhtl2qt7zN
38. FJ Yuan HJ Zhao XL Ren SL Zhu XJ Fu QY Shu 2007 Generation and characterization of two novel low phytate mutations in soybean (Glycine max L. Merr.) Theor Appl Genet 115 945 957 10.1007/s00122-007-0621-2 17701395 10.1007/s00122-007-0621-2 1:CAS:528:DC%2BD2sXhtFChurbL (Pubitemid 47561701)
39. HJ Zhao QL Liu HW Fu XH Xu DX Wu QY Shu 2008 Effect of non-lethal low phytic acid mutations on grain yield and seed viability in rice Field Crops Res 108 206 211 10.1016/j.fcr.2008.05.006 10.1016/j.fcr.2008.05.006
40. HJ Zhao QL Liu XL Ren DX Wu QY Shu 2008 Gene identification and allele-specific marker development for two allelic low phytic acid mutations in rice (Oryza sativa L.) Mol Breed 22 603 612 10.1007/s11032-008-9202-6 10.1007/s11032-008-9202-6 1:CAS:528:DC%2BD1cXhtFCgu7vM