Development of retrotransposon-based SSAP molecular marker system for study of genetic diversity in sea holly (Eryngium maritimum L.)

Plant Genetic Resources: Characterisation and Utilisation

Volumn 8, Issue 3, 2010, Pages 258-266

  Ievina, Baiba ^a   Syed, Naeem H ^b   Flavell, Andrew J ^b   Ievinsh, Gederts ^a   Rostoks, Nils ^a  

^a UNIVERSITY OF LATVIA   (Latvia)

^b UNIVERSITY OF DUNDEE   (United Kingdom)

Author keywords

Eryngium maritimum; genetic diversity; molecular markers; SSAP; Ty1 copia retrotransposons; wild plant species

Indexed keywords

ACANTHUS MOLLIS; ERYNGIUM; ERYNGIUM MARITIMUM;

EID: 79952901575     PISSN: 14792621     EISSN: 1479263X     Source Type: Journal    
DOI: 10.1017/S1479262110000316     Document Type: Article

References (33)

1. Acquadro A, Portis E, Moglia A, Magurno F and Lanteri S (2006) Retrotransposon-based S-SAP as a platform for the analysis of genetic variation and linkage in globe artichoke. Genome 49: 1149-1159.
2. Aviziene D, Pakalnis R and Sendzikaite J (2008) Status of red-listed species Eryngium maritimum L. on the Lithuanian coastal dunes. In: Cygas D and Froehner KD (eds) Environmental Engineering. The 7th International Conference, Vilnius, Lithuania. Selected Papers, I, Environmental protection, pp. 22-28.
3. Berenyi M, Gichuki ST, Schmidt J and Burg K (2002) Ty1-copia retrotransposon-based SSAP (Seguence-specific amplified polymorphism) for genetic analysis of sweet poptato. Theoretical and Applied Genetics 105: 862-869. (Pubitemid 36080315)
4. Bousios A, Saldana-Oyarzabal I, Valenzuela-Zapata AG, Wood C and Pearce SR (2007) Isolation and characterization of Ty1- copia retrotransposon sequences in the blue agave (Agave tequilana Weber var.azul) and their development as SSAP markers forphylogenetic analysis.Plant Science 172: 291-298. (Pubitemid 46073268)
5. Clausing G, Vickers K and Kadereit JW (2000) Historical biogeography in a linear system: genetic variation of sea rocket (Cakile maritime) and sea holly (Eryngium maritimum) along European coasts. Molecular Ecology 9: 1823-1833.
6. Curle M, Stabbetorp OE and Nordal I (2007) Eryngium maritimum, biology of a plant at its northernmost localities. Nordic Journal of Botany 24: 617-628. (Pubitemid 46395982)
7. De Riek J, Calsyn E, Everaert I, Van Bockstaele E and De Loose M (2001) AFLP based alternatives for the assessment of Distinctness, Uniformity and Stability of sugar beet varieties. Theoretical and Applied Genetics 103: 1254-1265. (Pubitemid 34045661)
8. Ellis THN, Poyser SJ, Knox MR, Vershinin AV and Ambrose MJ (1998) Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea. Molecular Genetics and Genomics 260: 9-19. (Pubitemid 28502216)
9. Flavell AJ, Dunbar E, Anderson R, Pearce SR, Hartley R and Kumar A (1992) Ty1-copia group retrotransposons are ubiquitous and heterogeneous in higher plants. Nucleic Acids Research 20: 3639-3644.
10. Kadereit JW and Westberg E (2007) Determinants of phylogeographic structure: a comparative study of seven coastal flowering plant species across their European range. Watsonia 26: 229-238.
11. Kumar A and Bennetzen JL (1999) Plant retrotransposons. Annual Reviews of Genetics 33: 479-532. (Pubitemid 30083131)
12. Łabuz TA (2007) Evaluation of past and present Sea Holly (Eryngium maritimum) habitats on Polish coastal dunes. Acta Universitatis Latviensis 723: 99-114.
13. Lou Q and Chen J (2007) Ty1-copia retrotransposon-based SSAP marker development and its potential in the genetic study of cucurbits. Genome 50: 802-810. (Pubitemid 350144747)
14. Matsunga S, Yagisawa F, Yamamoto M, Uchida W, Nakao S and Kawano S (2002) LTR retrotransposons in the dioecious plant Silene latifolia. Genome 45: 745-751. (Pubitemid 35368860)
15. Natali L, Santini S, Giordani T, Minelli S, Maestrini P, Cionini PG and Cavallini A (2006) Distribution of Ty3-gypsy- and Ty1-copia-like DNA sequences in the genus Helianthus and other Asteraceae. Genome 49: 64-72.
16. Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Molecular Ecology 13: 1143-1155. (Pubitemid 38504420)
17. Olšauskas AM and Urboniene R (2008) State of Eryngium maritimum L. population on the Curonian Spit coastal dunes. Environmental Reasearch, Engineering and Management 2: 69-74.
18. Pearce SR, Stuart-Rogers C, Knox MR, Kumar A, Noel Ellis TH and Flavell AJ (1999) Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies. The Plant Journal 19: 711-717.
19. Pearce SR, Knox M, Ellis THN, Flavell AJ and Kumar A (2000) Pea Ty1-copia group retrotransposons: transpositional activity and use as markers to study genetic diversity in Pisum. Molecular Genetics and Genomics 263: 898-907.
20. Porceddu A, Albertini E, Barcaccia G, Marconi G, Bertoli FB and Veronesi F (2002) Development of S-SAP markers based on an LTR-like sequence from Medicago sativa L. Molecular Genetics and Genomics 267: 107-114. (Pubitemid 34251589)
21. Queen RA, Gribbon BM, James C and Jack P (2004) Retrotransposon- based molecular markers for linkage and genetic diversity analysis in wheat. Molecular Genetics and Genomics 271: 91-97. (Pubitemid 38299689)
22. Reed DH and Frankham R (2003) Correlation between fitness and genetic diversity. Conservation Biology 17: 230-237. (Pubitemid 36234415)
23. Ruas CF, Weiss-Schneeweiss H, Stuessy TF, Samuel MR, Pedrosa- Harand A, Tremetsberger K, Ruas PM, Schlüter PM, Herrera MAO, König C and Matzenbacher NI (2008) Characterization, genomic organization and chromosomal distribution of Ty1-copia retrotransposons in species of Hypochaeris (Asteraceae). Gene 412: 39-49.
24. Sanz AM, Gonzalez SG, Syed NH, Suso MJ, Saldaña CC and Flavell AJ (2007) Genetic diversity analysis in Vicia species using retrotransposon-based SSAP markers. Molecular Genetics and Genomics 278: 433-441. (Pubitemid 47437687)
25. Syed NH, Surseshsundar S, Wilkinson MJ, Bhau BS, Cavalcanti JJV and Flavell AJ (2005a) Ty1-copia retrotransposonbased SSAP marker development in cashew (Anacardium occidentale L.). Theoretical and Applied Genetics 110: 1195-1202. (Pubitemid 40689312)
26. Syed NH, Sørensen AP, Antonise R, van de Wiel C, van der Linden CG, Hooftman WWDAP, Nijs HCM and Flavell AJ (2005b) A detailed linkage map of lettuce based on SSAP, AFLP and NBS markers. Theoretical and Applied Genetics 112: 517-527.
27. Syed NH and Flawell AJ (2006) Sequence-specific amplification polymorphisms (SSAPs): a multi-locus approach for analyzing transposon insertions. Nature Protocols 1: 2746-2752.
28. Tam SM, Mhiri C, Vogelaar A, Kerkveld M, Pearce SR and Grandbastien MA (2005) Comparative analysis of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR. Theoretical and Applied Genetics 110: 819-831. (Pubitemid 40534165)
29. Venturi S, Dondini L, Donini P and Sansavini S (2006) Retrotransposon characterisation and fingerprinting of apple clones by S-SAP markers. Theoretical and Applied Genetics 112: 440-444. (Pubitemid 43081587)
30. Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M and Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23: 4407-4414.
31. Waugh R, McLean K, Flavell AJ, Pearce SR, Kumar A, Thomas BBT and Powell W (1997) Genetic distribution of Bare- 1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP). Molecular and General Genetics 253: 687-694.
32. Westberg E and Kadereit JW (2009) The influence of sea currents, past disruption of gene flow and species biology on the phylogeographical structure of coastal flowering plants. Journal of Biogeography 36: 1398-1410.
33. Zolkos K, Afranowicz R, Bloch-Orlowska J and Koziel K (2007) Distribution and the resources of Sea Holly (Eryngium maritimum L.) on the western shore of the Gulf of Gdansk. Biodiversity: Research and Conservation 5-8: 55-60.