메뉴 건너뛰기




Volumn 2, Issue 1, 2009, Pages 76-92

On the reconstruction of three-dimensional protein structures from contact maps

Author keywords

Contact map; Molecular modeling; Protein folding

Indexed keywords


EID: 79952789413     PISSN: None     EISSN: 19994893     Source Type: Journal    
DOI: 10.3390/a2010076     Document Type: Review
Times cited : (5)

References (24)
  • 1
    • 0015859467 scopus 로고
    • Principles that govern the folding of protein chains
    • Anfinsen, C. Principles that govern the folding of protein chains. Science 1973, 181, 223-230.
    • (1973) Science , vol.181 , pp. 223-230
    • Anfinsen, C.1
  • 2
    • 33646374430 scopus 로고    scopus 로고
    • Prediction and design of macromolecular structures and interactions
    • 495-463
    • Baker, D. Prediction and design of macromolecular structures and interactions. Phil. Trans. R. Soc. London B Biol. Sci. 2006, 361, 495-463.
    • (2006) Phil. Trans. R. Soc. London B Biol. Sci. , vol.361
    • Baker, D.1
  • 3
    • 37149021854 scopus 로고    scopus 로고
    • The pros and cons of predicting protein contact maps
    • Zaki, M.J., Bystroff, C. Eds.; Humana Press: New York, NY, USA
    • Bartoli, L.; Capriotti, E.; Fariselli, P.; Martelli, P.L.; Casadio, R. The pros and cons of predicting protein contact maps. In Protein Structure Prediction. Zaki, M.J., Bystroff, C. Eds.; Humana Press: New York, NY, USA, 2008; pp. 199-217.
    • (2008) Protein Structure Prediction , pp. 199-217
    • Bartoli, L.1    Capriotti, E.2    Fariselli, P.3    Martelli, P.L.4    Casadio, R.5
  • 4
    • 38049119840 scopus 로고    scopus 로고
    • LETTERS AND COMMENTS: The effect of backbone on the small-world properties of protein contact maps
    • Bartoli, L.; Fariselli, P.; Casadio, R. LETTERS AND COMMENTS: The effect of backbone on the small-world properties of protein contact maps. Physical Biology 2007, 1-5.
    • (2007) Physical Biology , pp. 1-5
    • Bartoli, L.1    Fariselli, P.2    Casadio, R.3
  • 10
    • 0035663988 scopus 로고    scopus 로고
    • Prediction of contact maps with neural networks and correlated mutations
    • Fariselli, P.; Osvaldo, O.; Valencia, A.; Rita, C. Prediction of contact maps with neural networks and correlated mutations. Protein Engineering 2001, 14, 835-843.
    • (2001) Protein Engineering , vol.14 , pp. 835-843
    • Fariselli, P.1    Osvaldo, O.2    Valencia, A.3    Rita, C.4
  • 13
    • 26444479778 scopus 로고
    • Optimization by simulated annealing
    • Kirkpatrick, S.; Gelatt, C. D.; Vecchi, M. P. Optimization by simulated annealing. Science 1983, 220, 671-680.
    • (1983) Science , vol.220 , pp. 671-680
    • Kirkpatrick, S.1    Gelatt, C.D.2    Vecchi, M.P.3
  • 15
    • 0013433957 scopus 로고    scopus 로고
    • Distance Geometry: Theory, Algorithms, and Chemical Applications
    • Ragúe, V., Schreiner, P.R., Allinger, N.L., Clark, T., Gasteiger, J., Kollman, P.A., Schaefer, H.F., Eds.; J. Wiley & Sons: New York
    • Havel, T.F. Distance Geometry: Theory, Algorithms, and Chemical Applications. In Encyclopedia of Computational Chemistry. Ragúe, V., Schreiner, P.R., Allinger, N.L., Clark, T., Gasteiger, J., Kollman, P.A., Schaefer, H.F., Eds.; J. Wiley & Sons: New York, 1998; pp. 723-742.
    • (1998) Encyclopedia of Computational Chemistry , pp. 723-742
    • Havel, T.F.1
  • 16
    • 0000960523 scopus 로고
    • ε-Optimal solutions to distance geometry problems via global continuation
    • Pardalos, P. M., Shalloway, D., Xue, G. Eds.; American Mathematical Society
    • Moŕe, J.; Wu, Z. ε-Optimal solutions to distance geometry problems via global continuation. In Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding. Pardalos, P. M., Shalloway, D., Xue, G. Eds.; American Mathematical Society, 1995; pp. 151-168.
    • (1995) Global Minimization of Nonconvex Energy Functions: Molecular Conformation and Protein Folding , pp. 151-168
    • Moŕe, J.1    Wu, Z.2
  • 18
    • 85196442690 scopus 로고    scopus 로고
    • Distill: a machine learning approach to ab initio protein structure prediction
    • Bandyopadhyay, S., Maulik U., Wang J. T. L. Eds.; World Scientific
    • Báu, D.; Pollastri, G.; Vullo, A. Distill: a machine learning approach to ab initio protein structure prediction. In Analysis of Biological Data: A Soft Computing Approach. Bandyopadhyay, S., Maulik U., Wang J. T. L. Eds.; World Scientific, 2007.
    • (2007) Analysis of Biological Data: A Soft Computing Approach
    • Báu, D.1    Pollastri, G.2    Vullo, A.3
  • 22
    • 43349102979 scopus 로고    scopus 로고
    • FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps
    • Vassura, M.; Margara, L.; Di Lena, P.; Medri, F.; Fariselli, P.; Casadio, R. FT-COMAR: fault tolerant three-dimensional structure reconstruction from protein contact maps. Bioinformatics 2008, 24, 1313-1315.
    • (2008) Bioinformatics , vol.24 , pp. 1313-1315
    • Vassura, M.1    Margara, L.2    Di Lena, P.3    Medri, F.4    Fariselli, P.5    Casadio, R.6
  • 24


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.